Fvar009280.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- lola
- Assembly
- GCA_011392965.1
- Location
- WNWW01000930.1:33066-36123[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8 3.8e+03 -3.1 0.1 4 20 170 186 169 188 0.74 2 2 7.3e-09 7.4e-06 24.8 0.0 9 40 401 433 394 438 0.86
Sequence Information
- Coding Sequence
- ATGGAAGACGACCAGCAGTTCTGCCTTAGGTGGAATAATCATCAGAGTACATTAATCCAGAACTTCGACACGCTTCTCGAAAGCGGGACGCTTGTTGACTGCACGCTCGCGGCAGAGGGGAAGTACTTGAAAGCCCATAAGGTAGTTCTATCTGCGTGCAGTCCTTATTTTGAGGTGattcaAACTAAAAAGGAGGAACctcaaattgaaacaaaatggcTGCTCTTGTTGAATGTTGCCTGGGCAGAAGCCAGAGAGGCAGGGGAACTGAAAGCCCAAACCCCCTCCTGGTTCCTCCTGGTAATCAATACAGAGAAAGCAAGATGGCTGATTTCCAGGGCACTTGCCCTGGGATTTTACCCTGATATGGGTGGAGGGgGGCTCCTCAGTGAACATTATGACAAGCATCCTGTCTTTATACTCAAAGATGTTAAGTTTAAAGAATTGAAAGCAATGATGGACTATATGTACAGGGGAGAAGTAAATATCTCTCAAGACCAATTGGCAGCACTACTTAAAGCTGCTGAGTCTCTGCAAATTAAAGGTCTATCAGAAAGTAAAACAAGTGGTAGTAGTAAGACGGACTCTAGGCAACAAAAAGTCGTTCCGCAAACAACATCACAGCCTGACATTCCAATTTCGTCTTCCGGTCTTACAATAGAAAAGAACAAAGTTCCTAGGCAGGGTATATCACAAGGTTCCGTAGGGGACCTGCCTGAAGACTCAGCCAGTCCCCAAATCCCTAAGGGTCTCTCCTCGAGggaAGGTTCTCAAAGTCCCAcctcgagaaaaagaaaaagatttagaCGAAAAAGTATAGGTGATGACAATTCTGTAGAAAATCATGAAGCGTCGAATTCAAGCGATATGCCTCAACAAATGGGCGTTCCTGCGCTTGGAATTACACCCGTGGCTGATGAAAAAACACATGCAGACCCTACAGATTCTATTGGGAGGTCAGCCTTAATGACGCAGTTGACGAAACCTGCTGATGAAATGTTGCAGTTGCCGTTAGAAAAACCTGAGCCAAATGATAATCTCATCGAGCCAAAGTCTGAATATCTGGAAGATCCAGAAGAAAGTGTCGAAGATCTAACGCTGGATGACGATATGAATGATCTGAACGAGATGGAACAGGATAACAATAGAGCTGGCCCGTCCCACGACCCCTCCCAACATCCTGACTCGGTTAAAATGTCCCTGGATGCAATATTACAGCAGGGGGTTAGCACCACTCAGGCTTCAGAGATGTATGGCATTAATCGCTCAACCCTAcaattctatttgaaaaagtTGAACGTCGTCAGAAGGAGATGGAGACAACAACCTAGTAACCTGATCCAGCCTAGACAACCCTAG
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEVIQTKKEEPQIETKWLLLLNVAWAEAREAGELKAQTPSWFLLVINTEKARWLISRALALGFYPDMGGGGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTSGSSKTDSRQQKVVPQTTSQPDIPISSSGLTIEKNKVPRQGISQGSVGDLPEDSASPQIPKGLSSREGSQSPTSRKRKRFRRKSIGDDNSVENHEASNSSDMPQQMGVPALGITPVADEKTHADPTDSIGRSALMTQLTKPADEMLQLPLEKPEPNDNLIEPKSEYLEDPEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPDSVKMSLDAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPSNLIQPRQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734033;
- 90% Identity
- iTF_00734033;
- 80% Identity
- iTF_00734033;