Fvar006533.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- lola
- Assembly
- GCA_011392965.1
- Location
- WNWW01000279.1:432918-439864[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 1.7e+03 -2.0 0.0 32 39 22 29 21 33 0.84 2 2 9.1e-13 9.2e-10 37.3 0.0 3 38 402 436 400 441 0.92
Sequence Information
- Coding Sequence
- ATGCCGAAGAACTTTCAAAGGAATTGCAACTACCCGATGATGCCTCTGATCAAGGACCTGGCGACTCTTTGGATGGCGAAGCGAGTCGAGTTCCCATATCGGTGTGAGACATGCGGGAAAGGGTACCAGCATCGCGCCACACTGGTCAGGCATACCAGGCACGAGTGTGGCAAGGAACCGCAGTTCAAATGCCCCTATTGCGCCCACAGAACCAAACAACGCGGCAATCTTTATCAACACATTCGAACCAATCATCCTGGCAAGAACGTGTTTTCGAAGCTGTCTTGGGCCGGATACCGTTATCAAAGCAGAACCGTTGGCCAGCACAAGCTGTTGCTATCCTCGAATAGTCCAAACTTCAAGGTACCGCGGAAATCGAGCAGCTGTTTGGACAAAAAGCCAGGTTGCTTCAGATGCCCGAAGTGCAACAAAGGTATACTTGCGTGCGAGAAATGCGGTCGGCTGTTCTTCTGGCCTTCCAGTTTGAAACTTCATCGAAGAATGGGTTGCGAGAAACCACCAAATTTCTGCTGCACCTTCTGCGATTACAAGTCGAGATATAAGGGGAATTTGAGGAGGCATTTATCTTGTAAACATTGGAAACACAAGCCGAAGTTCTACTGTCCGAAAATAAAATGCACCCTTATTCCCGATCGTGAGGCCGCGACTACACGTTTGTCCACGTTGCGGGCAAATGTATTCCTGGGCGTCGAATCTACGGAAACATCTGAAGATGGGCTGCGGAATGATTCCACGAGCGCAAGCAAAATCAGGGAAGGAATCGGCGAACGCATGGAGTTACTCGATGCGGCCGACGCTTACTTTATAAGCACGcggattaattttgaaaacgaaaGTACCAAAACGTGTACGGACAACTGTGTCGTGATCAAAGGTACCTGCGAGAATGAggacgaagacgacgacgagacTGAGAGCATCGAGTGTCAGGCAGGCGGCTTCAATGAAGATAGGCAACAGTACAAGTATTCTTGCACGAGGTGCTTGAAAAGTTACAAAAGGAAAGGTCATCTGGTGGAgcatcaaaaaatattttgcggCAAGGACAAGCAGCAGTGTTGCCCGTACTGCGTCTTTCGCACGTACaagaaatcaaatttgaagAAGCACGTTAATCGGCGAAGGTGTTACACCAGAAGATCAAGTTTCTCCGGAAAGTTCGTGAGATCTGAAATTGATGTTGAACGTATCAAGTTAGCTGTTGAAGCGGTGGCCAGTGGGTTGTCCTTGAGGAAAGCGGCTGAAAAATTCTCTATATCCAAGTCTGTTCTTCATCGTTACAGTAAACTGGGGATTCTCGGTGTAATGGAGAAATATATGCGAAATGGTccgaaattgtga
- Protein Sequence
- MPKNFQRNCNYPMMPLIKDLATLWMAKRVEFPYRCETCGKGYQHRATLVRHTRHECGKEPQFKCPYCAHRTKQRGNLYQHIRTNHPGKNVFSKLSWAGYRYQSRTVGQHKLLLSSNSPNFKVPRKSSSCLDKKPGCFRCPKCNKGILACEKCGRLFFWPSSLKLHRRMGCEKPPNFCCTFCDYKSRYKGNLRRHLSCKHWKHKPKFYCPKIKCTLIPDREAATTRLSTLRANVFLGVESTETSEDGLRNDSTSASKIREGIGERMELLDAADAYFISTRINFENESTKTCTDNCVVIKGTCENEDEDDDETESIECQAGGFNEDRQQYKYSCTRCLKSYKRKGHLVEHQKIFCGKDKQQCCPYCVFRTYKKSNLKKHVNRRRCYTRRSSFSGKFVRSEIDVERIKLAVEAVASGLSLRKAAEKFSISKSVLHRYSKLGILGVMEKYMRNGPKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734193;
- 90% Identity
- iTF_00734193;
- 80% Identity
- iTF_00734193;