Fvar004150.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- bab1
- Assembly
- GCA_011392965.1
- Location
- WNWW01000255.1:14804-28782[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-13 1.7e-10 39.6 0.2 4 45 342 383 339 383 0.91 2 2 0.23 2.3e+02 0.8 0.0 29 43 427 441 427 443 0.88
Sequence Information
- Coding Sequence
- ATGGCGAGCACGTCGCAGCAGTACtgtttgcgctggaataatcACCGCTCGAATTTGTTGACGGTGTTCGACGAGCTACTGCAAAACGAGGCATTCACCGATGTGACACTGGCAGTCGACGGTGGCGTGTCCTTGAAATGTCACAAGATGGTCCTGGCGGCGTGTTCCTCCTACTTTCAAAGCTTGTTCCTCGACTTGCCATGCAAGCACCCTATCGTCGTATTGAAGGACGTGAAATATTCGGAGATCAAAGCGATCCTCGAGTACATGTACCGCGGCGAAGTAAACGTGGCCCAGGAGCAATTGGCCGGGTTGTTGAAGATCGCTGAGGTGCTGAAGGTGAAGGGGCTGGTTGAAGAAAATGGCTCCCAAGGCCGTCGTGAGGAGGTTGAAACCTCCATGTCCCCGCCGCCGGCCATCAGCACCAGTACAACCAGCAGTGCGGTTCATAGCAGTGATCACGCGTCTCCCCCGCATTCCACGGGCACTACGTACGATATATACGGCAAATCACCAGTCGACAGAAGCAGTCGTTTACCGTTGCCGATGTGGTCCCTACCGGGGATCCCCATGACTCACTCCAGCACCGGTCACCAAACGGTGGCGCATCAACATTCCTCTATGTTGGCCGGCTCGTCGCCCATTTTGACCGGCTTCGAGACCTCTCCGTTGAAGCACAAGAAACTTTCGAACATGCTGATGAACCGAGACACGCCGATCCTGAGGACGGTGCTGGGTCAGGGTCACGCGGATAGCTCCCAAGGGATTCCCCTGTTGCACCCGGACAACCACGAGAATCAATTTAGAAACAGCAGCAACGGCTCGTCGAACGAGAACGATAGACGCGGTAGTATGGATGCAGTTCACGGGGAACCTGCGCACAGCCCTTACACCGACATGATGGATGAAGATGATAAGCAATCGTCGCCGCAGTCGTACCCTCCTGATATTAAACCAGGGATGGTTAATTACGTGCCAGCGCAAAAGCCGGAGTGGAAACGGTACAAGCAATACACGAGGCACGACATAATGTCCGCGATCGAGGCGGTACGCTCGGGAATGAGTGCCCTCCAGGCGGCACGTAAGTACGGAGTACCCTCACGAACTCTTTACGACAAGGTAAGGAAGTTAGGGATCACGACGTCGCGACCGTTTAAACGGGGATCGAACGGCAGCGGCGCCTGTTTCCCTTACGGGATTGGTGGTAACGCGAACGGCAACATCTACAGCGGCGCTCTCTCGgaaaacgagaacgagagCGGCAGCGTAATCGAAGGTCCTAGGTCCACGCTCGACGCGTGCAAGTCAAGAGATCCTCCTGTAGATCGGGAAATCGTAGATGTTAGTCGCTGCACATCCAGCCCTACGGTGCACTCCGTGAAACAGCCGAGCAATGAGGATCAAGTTGAGGATCTTTCTGTCAGTCCCAGCTGTAACATCTCTCGTGATGGTCAAGAGTATCGTCACCACCGGCAGAAGCTAAACGAAAGCTACTGTAGAAATTCGCATCAACGCATTGAGAAGTTTGTAaagtttttgttaaataatttaagagaGAGATTGTACGTGTCTCTGGTGAAACGATACGTTGGAACATCGGCAGCTGCTCGCGACGTTTTCCTGGATGCTGAGGCATGCGCCCTAAAAACTCCGGGATTGATGTATTGCAGAGCGCAGATCTGCATTTATTACCTGTTGTGGACAGCGACGCTGAGCCCGAAGCTTACCTTGGAACAGGAAACCAGTACCGCGAAAAATTTGGACTGCCCCGCAGAATGCATCTGCCTATCTCCCAAGCAGGTCCTCTGCAATACAGGCGGGTTAAAAGACATTCCCACCCAGCAGCTGCCGCAAACAGTGGAGGAGCTCTCCCTGACAAAGAACAACTTCCCGATAATAAAAGGCGACGCATTCGCCGGCCTGAGAGTGCTACGAAAGCTGACGATGGATGGTAACAACATCTCGACCATACGACCGTTCGCGTTCCGCGGCCTGAGCAAGTTACGCGAGCTTTCCATACAGCACACACCTCTGCCGTTCATCGAGAAGTTCTCGTTCGCGGCCCTGCAAAACGTCTCGGTGCTGCTGCTGGCGAACAACAAGATACGTTACATCGAGGGCTACTCGTTCGCCGGGACCTCCAACATTCGTTTGATCCTGCTGAGCAACAACCCACTGCTCAGAATCCAAAGCCACGCGTTCTCTGGTTTGACGAACGTTGTTCGCCTGATATTCCCATCGGGGATAAGAACCATCGAGCCGGACGCGTTCGACGGCCTTCAACACGTTTGGCTTCTGAAGCTGACCTACATGGACCTGTCTTCCCTTCAGTCGTACACGTTCCGCGGCCTGTCCTACGTGCAGTCGTTGAACATCCAGGACAGCGACCTGGGCATCGTCGAGAAGAACGCGTTCACCGGGCTCACTCACGTCGATCGGCTGAACATCGTGAACAACAAGATCGACCTGATCGAGAAATTGTTTCTACAGTACGAGAGCAACATTGACACGTTGAGATTCCACGGGAACCACGTGCTGGAGGCGCCACGCCACGTGAAGGACATCAGCCTCGAGGTGAACTCCATCAGCGCCGTCGACAACCACTTCCCGTGCGACTGCCAGGCTCACAACGTGCTCGAGAGCGACTTTGTCAACGGTACTGTGAGCGAGTTCCAAAAGAGGAACTACTGCATCTCGCCGATCGAGTACAACGGGAAGCCAATGAATCTCGTGGACTTCGGACTGGTCGCCAGATGCCACGACAACGTCGTGCAAGACAACCTGGGCTCCGGCGTCATTGGGATCATCACTCTGCCAACCACTCTGTTCATCGTTCTTCTGTTCTCCATGAATCTCTTCCAGTGA
- Protein Sequence
- MASTSQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGVSLKCHKMVLAACSSYFQSLFLDLPCKHPIVVLKDVKYSEIKAILEYMYRGEVNVAQEQLAGLLKIAEVLKVKGLVEENGSQGRREEVETSMSPPPAISTSTTSSAVHSSDHASPPHSTGTTYDIYGKSPVDRSSRLPLPMWSLPGIPMTHSSTGHQTVAHQHSSMLAGSSPILTGFETSPLKHKKLSNMLMNRDTPILRTVLGQGHADSSQGIPLLHPDNHENQFRNSSNGSSNENDRRGSMDAVHGEPAHSPYTDMMDEDDKQSSPQSYPPDIKPGMVNYVPAQKPEWKRYKQYTRHDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVRKLGITTSRPFKRGSNGSGACFPYGIGGNANGNIYSGALSENENESGSVIEGPRSTLDACKSRDPPVDREIVDVSRCTSSPTVHSVKQPSNEDQVEDLSVSPSCNISRDGQEYRHHRQKLNESYCRNSHQRIEKFVKFLLNNLRERLYVSLVKRYVGTSAAARDVFLDAEACALKTPGLMYCRAQICIYYLLWTATLSPKLTLEQETSTAKNLDCPAECICLSPKQVLCNTGGLKDIPTQQLPQTVEELSLTKNNFPIIKGDAFAGLRVLRKLTMDGNNISTIRPFAFRGLSKLRELSIQHTPLPFIEKFSFAALQNVSVLLLANNKIRYIEGYSFAGTSNIRLILLSNNPLLRIQSHAFSGLTNVVRLIFPSGIRTIEPDAFDGLQHVWLLKLTYMDLSSLQSYTFRGLSYVQSLNIQDSDLGIVEKNAFTGLTHVDRLNIVNNKIDLIEKLFLQYESNIDTLRFHGNHVLEAPRHVKDISLEVNSISAVDNHFPCDCQAHNVLESDFVNGTVSEFQKRNYCISPIEYNGKPMNLVDFGLVARCHDNVVQDNLGSGVIGIITLPTTLFIVLLFSMNLFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00734022; iTF_00117920; iTF_00118096;
- 90% Identity
- iTF_00734022;
- 80% Identity
- iTF_00734022;