Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 9.9e-07 0.001 18.0 0.0 2 38 53 89 52 95 0.78

2 5 2.7e-11 2.7e-08 32.6 0.0 5 39 106 139 103 146 0.85

3 5 0.06 61 2.7 0.0 21 34 173 186 159 192 0.80

4 5 1.1 1.1e+03 -1.4 0.0 32 45 201 215 201 215 0.89

5 5 4.9e-12 5e-09 34.9 0.1 4 39 217 252 214 258 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	9.9e-07	0.001	18.0	0.0	2	38	53	89	52	95	0.78
2	5	2.7e-11	2.7e-08	32.6	0.0	5	39	106	139	103	146	0.85
3	5	0.06	61	2.7	0.0	21	34	173	186	159	192	0.80
4	5	1.1	1.1e+03	-1.4	0.0	32	45	201	215	201	215	0.89
5	5	4.9e-12	5e-09	34.9	0.1	4	39	217	252	214	258	0.92

Coding Sequence: ATGACTGTAATTGGCAAGGctgaagaaaatgttattgATGCATTGCAACATAATTATGAGGACTTAGAGAATCAACAAAAAGATGAGGTCATTGACAATTCtatgttgaataaaaaaaagaaacgtagaCGCGATACAACAAAAAGAGATTATAGCGATGATATGCTAGCATCAGCAATCAATGACTTAAAAGCAGGTCAAACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTGTATATGCGTGCTAAAGCATTAGGTATACATTTAAACGCATCAAGAAACGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATGCTGTAATTGgtGGATCAAGCTTGCAGCACGCGTCAGAAACGTTTAGTATACCAAAGACTGTATTATGGAGAAGGATTCAGAAAGAAGGATATCAAATATTACGTTCAGAAATGAAAAGGTCTTATGGATCTGATAAACGGGAAGCTGCAGTTAAGGCTTTAGAAAGAGGGGAGAATTTAACAAAAGTTGCACttgaatttaaaattccGAAAACTACTTTATTTAGAGATAAAGCACGATTGGTGGATGAAGGAAAATTACCATTGTCATTTTGGAAGAAACGTAAGacagaaaatgaagaattaaaaaggtCTCGTTTAGAAGAAGCTGTTGCTGCTTGTAAAGGAGGAAAAATGTCGCAAGCAGCAGCGTCAATGACATATCATATTCCAAAAACAACAATATGGAGACGGCTCCAACAAGATAGTAAAAAGTCAGAGCGTTCATTAAACTCGAGGAAGCAAAGAATAGCAGATTCTAAACATAACATGAAGGTAGAAGAAGGATCTGATTTTACATATTGCGAGgtTTCATCAGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGGAGATTCTGTGATAATATTAACAGCAGAAGATATGGATGGGCTGAATATAGAGGAagagcgacaaattattgttaactCAgAATCAGGGCAAGAGTATATTCCTTGTGCTATAAGTatcgaagaaaattcaaattattcacaAACAGAAAGTTAG
Protein Sequence: MTVIGKAEENVIDALQHNYEDLENQQKDEVIDNSMLNKKKKRRRDTTKRDYSDDMLASAINDLKAGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASETFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDSKKSERSLNSRKQRIADSKHNMKVEEGSDFTYCEVSSEIPITYIDENSIPGDSVIILTAEDMDGLNIEEERQIIVNSESGQEYIPCAISIEENSNYSQTES

Sequence clustering based on sequence similarity using MMseqs2