Focc011222.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML768031.1:1139-7805[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.36 20 5.8 0.4 3 23 286 308 284 308 0.90 2 13 2.1 1.1e+02 3.4 2.2 1 21 430 450 430 454 0.90 3 13 0.016 0.84 10.1 0.5 2 23 514 537 513 537 0.96 4 13 0.055 3 8.4 0.4 1 23 560 583 560 583 0.97 5 13 3.8 2.1e+02 2.6 3.7 2 23 637 659 637 659 0.91 6 13 0.034 1.8 9.0 0.5 1 23 664 687 664 687 0.93 7 13 0.012 0.63 10.5 3.8 1 23 762 783 762 783 0.98 8 13 0.0047 0.25 11.8 5.2 1 23 789 812 789 812 0.93 9 13 0.00033 0.018 15.4 5.9 3 23 894 915 892 915 0.94 10 13 0.34 18 5.9 0.0 3 23 922 944 920 944 0.90 11 13 0.34 18 5.9 4.3 1 23 953 975 953 975 0.95 12 13 0.0011 0.059 13.7 3.2 1 23 981 1003 981 1003 0.99 13 13 0.0086 0.47 10.9 7.4 1 21 1009 1029 1009 1034 0.92
Sequence Information
- Coding Sequence
- atggccgcgccgtcgccgccggctgccgcgggcgcccaggatgacgacgaggaccGACACTTCTGCCTGCGCTGCCGGCAGACCATCGAGGGTCTCGACGAGTACGTGTTGCACCGCAGGACAGGCTGCAGCGGGCCCGCGCGACGCgccccagcggcggcaccgctccaggacgacgccgagggcggcggtcTCAAGGCGGCCGACTTCTTCTCGCAGCTCGAGCTGCGGAGCAGCGCCAAGGTGAACGACGGGGCGCCCTCCacgccagggccgccggcggggccggcggggccgcgcgggatGCTGACCAGGAGTAAGAGCTCCGCACCCcggtcctcgccgcgcgcccagctgcgccccacgccccgcgccaaggCCGCCAGGACCGCCAGGCGTGgagtgaggagggcggcgacgccCCTGACGAcggaggaggtcgacgaggaggATAACGACTCGTGGCGGTACCCGCCGAAGACGCACACCGGGGGCAAGTGGGGGCCGCAGCCACCCGAGagcgacccccgcgcccctccgcccagTGCGGGCGGCAAgtgggggccgccgccaccctcgcacACGGGTGGCAAGTGGAGGCCGTCTTCGGCAACGGAGCAGGTGGAGCAGCTGGCGGAGCAGGACGACGTCGGGCCGTCCCCGCAGGACGCGCAGGACGACTCCAGCgcgcaggaggaagaggacaggGAGGAGTGCCAGGCTGACAAGGACCTGCACCCTCCGCCCTCGCACACGAGGGGCAAGTGGGCGCCCGGCATGGCCAACAAGGTCCGCGCCGTGCTCatggcggacgcggcgccggcgcggaagtacggcagcgcggtgcagtaCTGGTGCGGCTCCTGCAACCGcaggctggccagcagcaggctgtaCGAGAGACACCTCAAGTCCGACCTGCACCTGCGGCGCACGCTCCCCGAGCGGCAGCTGGACACGGGCCCGctgcctccccaccaccccggcaGACACAGGAGTGCTGTTCGCTACATGCACCAGCCGCAACCGGACCATCCCGGTGAATCACCCTTCAGGGAGCAGCGTATTCGGGACGGGAAACTAGAGCAAGGTCACCGGTTAGGGGAGCGGGGTCAAGGGCACCGGGTGGAGCGGTGCGCGGTGTGCAGGGCCAGGGTGCACCGTCACCAGATCGGCAAGCACCTCGTGTCGCACTTCCACTGGCGCAGCACCAGGACGACGGAGGTGGGCTCCGTGGCCGCTGACCTCATCCTCGACAACATCGAGGCCGTGGTGCGGCAGTCGCCATTCCAGTGCGGCCTCTGCAAGTTCTACTGCAACTCCTCAAGCGTGTTCCGTCAGCACTGGGCCTCGGAGGACCACCGCCAGCAAGACAAGAAGGTGTCTAGTGAATCCGGTCAATACTGGTGCTCTCCATGTGAGGTAGGATGCTTCACAACTGATGAGATGGAAAATCATCTGTGGTGCGATGCTCACCGAGAAGTAGAGGCAGCTGTCAACAGAAGCGTTGCAGTTGTTGTTACGAGAAGGACATCTTTACGTTGCAAGGCTATAGGTTGCCATGCCGAGTTTCGGTATAACGCCCAGCTCGGTCGCCACGAGCGCCTGCACGGTCATgaggtcggcccgggccccgggggcggctggtCGACGGCCAGCGACCGCTACCAGGCGCGCTTCCGGTGCGCGGACTGCGGCGCTCTCCGGCGGtcgcgcctcgcgctgcagAAGCACCAGCTCAAGCagcacgcggcgggcgcgggcgccaggGGCTGCTTCTACTGCGGCGTGTGCAAGCTGGACCTGTTcccgtcggccgccgcggccgccgagcaccGCCAGACCCGGGCGCACCGCGACGCGGTCCGGGACCGGCGAGAGCGGAGGCGCGCGAGGCTGTTGGCGAGGAGGTGCCCCCACTGCCGGTACCCGTGCCACGGGCTGGCCAAGCTGCGCGCCCACCTGGAGGACAAGCACCCCGACCGCAAGCACCGCTGCACACTGTGCGGCCTGGCCTTCACGCTGCCGCAGGAGGTGTCCCAGCACTTCCGCGAtgtccaccgcgccgcgcccccatcagcgcccgcggcccccgccgatGGCGGGTCGCTAGTGCcgcgggagggcgaggagcCGCCCTTCacctgcgcgccctgcggctTCGCCACCGACTGGAGGGCGGAGATGGCCTTCCACAGGGTGCTGCACGGGCCACCGGAGAACCCAGCTCGTGTGGAGGGCGgagcggggggcggaggcgacgTCGACAGGACAGCACTGCGGTACAGGTGTCCGATCTGCTCCAAGTTGTGCCGCAAGCACGCGCTGCGCTCGCATCTCAACGTGCACACCGGCGAGAGGCCCTTCGAGTGCAGGCACTGCGACAAGAGCTTCAGCCGCAAGGACTCCTGCGTCAAGCACGAGCTCTCTGAGCACGAGCACCAGGACGACCCGCCCGAAGATGTCCGCGACGAGCAGGAGCGCAGGCTCCAGGATGCTATATCGTCCATAGCGAGCACGGGGGGGGCGCCGTCGACGAGGCCCTCGCCCGGCAGGCTCCCAGCGGTGGCCTCGGCCGACAACTTCTGCACGTCTCCGTCGATGGGCGTCGGGTGGGGCGTCACCACCGCCCCTGCGTCCGGCGACGAACCGGGTGAACCTCGCGAGCGGGAGCACCTCTGCGACAAGTGCGGGAAGTGCTTCTTCACAAAGACTACGCTCCGCCAGCACCAGCTGTCCGTGCACGGCGTCAAGCCCCTCGCCTGCTCCTGGCCGGGTTGCGCCATCCGGGTCCGGTcacccgccgagctgcgcgcccacGTCGAGACCCACaccggcgagggcgaggcgggcgcgttCGAGTGCCAGACCTGCCACTTCTTCGCCAAGTCCAAGAGGCTGCTCAAGAGGCACGAGACGCTCCACACGGGCGAGAAGAGGTTCAAGTGCGAGCACTGCGACTTTGCGGCCCGCAACAGCTGCGCGCTCATACGCCACCGGCGCGTGCACACGGGCGCCAAGCCCTTCTGCTGTCCGCACTGCAACTACCGCTGCAACAACTCGGAGAACCTGCGCAAGCACGTGCTCAAGACCAACAAGCACCCTGGCAAGTGCTTGTACGAGTGCCGCTTCTGCTCCGAGTCCAGCGACGCCGGCGGGGGAGACGGCGGCGTCTTCGCGACCAACGCGGCGGCCGACTTCCGGTCGCAcctcgcccgcgcgcacgccggccaGTTCCGCACGctgtcggccgcggcgtcctACGTGGCCGGGATCTACGACAAAGCCGCCGACCCCGCGCAGACCACGCAGGTGCTGCAGCCGAAACCGAGGAAGCGAGCAAGAGTGGATGGGGCGGATGCCGCGACCCAgatggagccgccgccgtcgtcgccgggaCCGCCGCTGTCGACGCTGTCGACGCGCCCCATcctcgccccccggccgcccgtcgAGGAAGAGCCGCCCACCTCCCTGCTTCCGAAGCACACCCTGCTGGACGGCGAGCTCTTCCCCGCCATGGGGGTGGACGCGGACTTCCCCGGGGACGTCGTGTACGTCCAGCTCGTCAACGACGACGAGCACATCGTGGTGCTTCAAAACTAA
- Protein Sequence
- MAAPSPPAAAGAQDDDEDRHFCLRCRQTIEGLDEYVLHRRTGCSGPARRAPAAAPLQDDAEGGGLKAADFFSQLELRSSAKVNDGAPSTPGPPAGPAGPRGMLTRSKSSAPRSSPRAQLRPTPRAKAARTARRGVRRAATPLTTEEVDEEDNDSWRYPPKTHTGGKWGPQPPESDPRAPPPSAGGKWGPPPPSHTGGKWRPSSATEQVEQLAEQDDVGPSPQDAQDDSSAQEEEDREECQADKDLHPPPSHTRGKWAPGMANKVRAVLMADAAPARKYGSAVQYWCGSCNRRLASSRLYERHLKSDLHLRRTLPERQLDTGPLPPHHPGRHRSAVRYMHQPQPDHPGESPFREQRIRDGKLEQGHRLGERGQGHRVERCAVCRARVHRHQIGKHLVSHFHWRSTRTTEVGSVAADLILDNIEAVVRQSPFQCGLCKFYCNSSSVFRQHWASEDHRQQDKKVSSESGQYWCSPCEVGCFTTDEMENHLWCDAHREVEAAVNRSVAVVVTRRTSLRCKAIGCHAEFRYNAQLGRHERLHGHEVGPGPGGGWSTASDRYQARFRCADCGALRRSRLALQKHQLKQHAAGAGARGCFYCGVCKLDLFPSAAAAAEHRQTRAHRDAVRDRRERRRARLLARRCPHCRYPCHGLAKLRAHLEDKHPDRKHRCTLCGLAFTLPQEVSQHFRDVHRAAPPSAPAAPADGGSLVPREGEEPPFTCAPCGFATDWRAEMAFHRVLHGPPENPARVEGGAGGGGDVDRTALRYRCPICSKLCRKHALRSHLNVHTGERPFECRHCDKSFSRKDSCVKHELSEHEHQDDPPEDVRDEQERRLQDAISSIASTGGAPSTRPSPGRLPAVASADNFCTSPSMGVGWGVTTAPASGDEPGEPREREHLCDKCGKCFFTKTTLRQHQLSVHGVKPLACSWPGCAIRVRSPAELRAHVETHTGEGEAGAFECQTCHFFAKSKRLLKRHETLHTGEKRFKCEHCDFAARNSCALIRHRRVHTGAKPFCCPHCNYRCNNSENLRKHVLKTNKHPGKCLYECRFCSESSDAGGGDGGVFATNAAADFRSHLARAHAGQFRTLSAAASYVAGIYDKAADPAQTTQVLQPKPRKRARVDGADAATQMEPPPSSPGPPLSTLSTRPILAPRPPVEEEPPTSLLPKHTLLDGELFPAMGVDADFPGDVVYVQLVNDDEHIVVLQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -