Focc009014.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML762972.1:836486-841829[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.18 9.5 6.8 0.1 2 23 223 244 222 244 0.95 2 12 0.073 4 8.0 1.8 2 23 278 299 277 299 0.93 3 12 0.0053 0.29 11.6 0.1 3 23 304 325 303 325 0.92 4 12 0.0015 0.081 13.3 2.7 1 23 335 360 335 360 0.95 5 12 0.00028 0.015 15.6 0.1 3 23 393 413 391 413 0.96 6 12 0.0089 0.48 10.9 2.4 1 23 450 472 450 472 0.95 7 12 0.15 8.2 7.0 6.5 2 23 479 501 478 501 0.89 8 12 6.8e-06 0.00037 20.7 0.1 2 23 514 536 513 536 0.94 9 12 0.24 13 6.3 3.9 1 23 541 563 541 563 0.96 10 12 0.0056 0.31 11.5 0.2 1 21 570 590 570 593 0.89 11 12 7.2e-06 0.00039 20.6 4.0 2 23 600 621 599 621 0.97 12 12 0.21 11 6.5 2.9 5 23 630 649 627 649 0.91
Sequence Information
- Coding Sequence
- ATGCGGGTTCTTGGAAGATATATGAAAATGCCAGCGAAGCCTCGCAAAAAGCCAATGTCTTTGTCAGCTTTTAAGAAGAAGGTGGGCTGTATGCTTGATACAATTTCTAAACTGGAATCTACAGAGAGAACCGAAGCATATGGGTACCTTCAAAACTGTGTCAACGTTCTTGGTGTTCATAAATTGGGACTGAACCAAACTGATATAGCAAACCTTATGGCCCGGCCAGAAAGTTCAACGTCGTCTAAGGAAGGTTTGCCCAAGGTAAATCCACCTAAAGAAGTTGTGGAACCTAAGTTGAGCCCAATAAAGGAGGTAAAACCCGTTCCATCCACTTCCTCTTCAATTCAAGTGTCAGTCATAAGTAGAAATGAACGAGCCAACGTAATCAACTACAGCAAGAGTGAAAACCATAGTACTCGAAAAGACAGTAGCCCTAAGTCTTTGGAGCCTCCCCAAAGTACAGAATGTAGTACCTCAGTACCTTTGCAAAGTGGGAATTACATGAAAGAAATTCACTCACATTGCGAAAATGTCAGAGAAACAGTGGTATCAAGCACTAAAATCCTTCAAAGCTCAGAACGTCTGGCCATTCCCACATATTCTCCTGATATAATTTCCACTCAAGACCAAGAAGATGTTTCAAAAGAAAAGGGTTCTCTTATTTCTTGTGTGGAATGCGGAGCCAAGTTAAAAAGTAGACGGGCTATGCTAGCTCACCTTGATCGTCATGTGCTGACTCCAATATCTTGTCGAGCTTGTCGAAGGAGTTTCAATTGTTTATCAGCTTTAAAATTCCATTTTGAGGATTTTTGCACAAGCCAAAGTCTGGTTTGCCCACAGTGTGAAGAAGTTTTCTCATGCCGCACACACTTTAACAACCATGTGGAAGGACATAATCGAAACAATTGCCAAATGTGTCCCGCTTTGTTCACGAATAGGAAAAACCTTGTTGTTCACATGGCTGATGCTCATAATGTAGTCATGCTTGCAGATGCCGCATTTACTTGCTCTGTTCAGGGTTGTGAAAGACGATTTGTGAAAAGATCAACATTGCATCGTCATCTTCAGCTTCGTCACACTTCTGAGGGGCAATTAGTTTGTATTACATGTGGGGCATTCTGTGAAGGGGAGGATGAATTCCGGTCTCACTCAGAAACTCATAAGCAATGGGCATGTGGAGAGTGCTCAGAAAGCTTCACCCGGAGGCAGCAGTACCTTGTCCACATGGCTAGCCATGAGACATCTAAATACAAATGTATCACTTGTGATCAAGTCCTTCCCACTAAAGCACGTGTTCTAGAACATAGAAAAGATGGACATCAAGTTGAAGGACTTAGTGTAGACTTTGCATGTGATAAGTGTGAGGAACGATTTCACACATCTGCTGAACTCCGAGACCATAGTCATGTTCATAAACCTCCAAATTCCATTTCATGCAAATACTGccacaaaacattttcaacCAAAAAAATTTGTCTTAGCCATATGCGCAGTCAGCATGGAGTTGTGGTGGAAAATGGGACTGAGTCCAGCTTAATTTGTGATCAGTGTGGAAAGCAATTTCGGTCTCCTAGTTTGTTGGCCAAACATTTAAAAGGTGTTCACAATGAGCAAGTTTTTAGCTGCAACTTTTGCAACCATAAAACTAACAAGGAGGTGAATATGAGACGTCACCGTGCATTACACACTTCACAAGAACAACAATTTGTTTGTGATCAGTGTGGTGCTTCCTTTCAGGCTCTAAGTAATTTGAAAGATCATAATTTGTTCGTTCATTCTGATGAGAGGAATGTTGAATGTAATGTGTGCCACAAGttatttaagagaaaaaatgaTCTTAGAAGACACCAACGCTCCCATTCTGATGACCGCAAATATGTTTGCCACTGTAAGCAAGCTTACAAATTTATGTCTCACTTGCGTCGCCATCAAGAGGCAGCTCATAAAACTGTGACAGCAAGCAGAATTGTGCAGCGCCTTGTCAAAGATTCCAGTGGTAATCTTATGGAAAAACCCAAACCAACAAAAGCAAAGAAGCTCAACAAAGATAAAAAGCATAGAACTGAAAGAATTGATATTGTAGAAGCTCAGGAACAATATGTAGATGAGCCAGTAACTCCTGTTCAACATGATGAGACAAGAGTTCAGTTAATTTCAGTTAACGAAGACGATCAAGTGGTGGCGATGTCTGTATCTGATCTTCCAATAGCTGATCAGCATGTCGATCCCTACAGCCTACCGGTTGCCTATGATGGTTTGAGTTACTCTGACCCAAAAGCGCAACTGGTatacaccacaccacccccagGCGCTCATGTCATGTCACTTCAGCTTCCCCAGTTTGAGTTGGTGGAGCCAATGTCTTATGAGACGGATACTGTCATGGATATGAGCACCACATCACATGCAGACTTAAATAATCATCATAGTTCAATGCTCATGAGTATAACATCCAGTGAACCTTCTTCTCAGCACCAGCCTGTTATGACTCTCATCACAGGCCTTGAGCACAATTCCCTATTCACCACACAGGCTGATATAGGCACAATGACTGAGCACAGCAATGTATATTCAGAAAGTTTACTGCATCATGCTCATGGCACAGTTTCTCATGTGAAATCTGTTGATAGTTATTCTCAGGCTCATATTTTGGATCCTAAAACTAGTCAAGCTGATATCAGTACTATGACTGATATGTACAGTGTTTATGAAGCACCAGCGAATTTGTGTGTAAATCAACATCAACACCACCAACATCATACACACCATGAACTCCCACCTCTAAATTATCCCTTAGATCCTTGCCACAGCATTCTACTGCCTACTGACCAGACTTGGCATATTCATCCGGAGGCTTCAAATCTTGCACAGTACTCCACCTGCTAG
- Protein Sequence
- MRVLGRYMKMPAKPRKKPMSLSAFKKKVGCMLDTISKLESTERTEAYGYLQNCVNVLGVHKLGLNQTDIANLMARPESSTSSKEGLPKVNPPKEVVEPKLSPIKEVKPVPSTSSSIQVSVISRNERANVINYSKSENHSTRKDSSPKSLEPPQSTECSTSVPLQSGNYMKEIHSHCENVRETVVSSTKILQSSERLAIPTYSPDIISTQDQEDVSKEKGSLISCVECGAKLKSRRAMLAHLDRHVLTPISCRACRRSFNCLSALKFHFEDFCTSQSLVCPQCEEVFSCRTHFNNHVEGHNRNNCQMCPALFTNRKNLVVHMADAHNVVMLADAAFTCSVQGCERRFVKRSTLHRHLQLRHTSEGQLVCITCGAFCEGEDEFRSHSETHKQWACGECSESFTRRQQYLVHMASHETSKYKCITCDQVLPTKARVLEHRKDGHQVEGLSVDFACDKCEERFHTSAELRDHSHVHKPPNSISCKYCHKTFSTKKICLSHMRSQHGVVVENGTESSLICDQCGKQFRSPSLLAKHLKGVHNEQVFSCNFCNHKTNKEVNMRRHRALHTSQEQQFVCDQCGASFQALSNLKDHNLFVHSDERNVECNVCHKLFKRKNDLRRHQRSHSDDRKYVCHCKQAYKFMSHLRRHQEAAHKTVTASRIVQRLVKDSSGNLMEKPKPTKAKKLNKDKKHRTERIDIVEAQEQYVDEPVTPVQHDETRVQLISVNEDDQVVAMSVSDLPIADQHVDPYSLPVAYDGLSYSDPKAQLVYTTPPPGAHVMSLQLPQFELVEPMSYETDTVMDMSTTSHADLNNHHSSMLMSITSSEPSSQHQPVMTLITGLEHNSLFTTQADIGTMTEHSNVYSESLLHHAHGTVSHVKSVDSYSQAHILDPKTSQADISTMTDMYSVYEAPANLCVNQHQHHQHHTHHELPPLNYPLDPCHSILLPTDQTWHIHPEASNLAQYSTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732129;
- 90% Identity
- -
- 80% Identity
- -