Focc014267.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763038.1:1013771-1025794[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.074 4 8.0 0.1 2 23 83 104 82 104 0.93 2 11 0.1 5.5 7.5 0.2 3 21 420 438 419 439 0.94 3 11 0.00039 0.021 15.1 2.3 2 21 533 552 533 553 0.94 4 11 0.079 4.3 7.9 1.8 2 22 620 640 619 640 0.94 5 11 0.00046 0.025 14.9 3.3 1 23 694 716 694 716 0.96 6 11 2.1e-06 0.00011 22.3 1.6 1 23 722 744 722 744 0.97 7 11 7.2e-05 0.0039 17.4 0.2 1 23 750 772 750 772 0.94 8 11 0.00019 0.01 16.1 0.1 1 23 779 801 779 801 0.98 9 11 0.00074 0.04 14.3 1.4 1 23 809 832 809 832 0.89 10 11 4.7e-05 0.0025 18.0 1.0 1 23 865 887 865 887 0.95 11 11 0.063 3.4 8.2 0.3 1 23 894 918 894 918 0.93
Sequence Information
- Coding Sequence
- ATGTACCATGATGCTATCAGTGAATTGTTGTCCGATGATGAAGTGGCAGATATCAGTTCTTCTCGCATCAGAAAGAGGAATAGATGCATTTCACTTCTTGAGTCCATGAAACGAGTCCAGCAAGCTCAAACTGCTGTGTCTGCAAATTCTTCTCACTCTGATCAGCTGCCAACAGAGTGGATGGAACAGTCTAAAACAACACAAGCAAATGATTCAAACGTCAGTTCTACACTTAGCAGTGCACTAGAGTGCAGATTTTGTGCAAAGCCATTTGTATATGAGAGTACACTCATAGAGCACGAAGAACTTCATGCTAAAGGTGTGGTGACTGACAATGACAGTATTGAGGATGTGGAACAAATTGGACATAAAGAACATGTGGGTCATGAGCAGCTTGTTCCATCTTCCACCCCGCAGCCAACTCGTCAAACTTCTACTCCTATCCCAATTCTTTCACCAGATCCTGTTTCAGCTTCCGCTCCTGTCATTCCTACCTCTGTTTCTGCTGTGGCTCCTCCCTCCATtccttctgctgcttctgcttcttccCCTACCGCTGAACCTTCCTCTGCCCCTGCTCCCGTTGTCGACCCAATACCCACCCACACTTCTACATCCTCACTCGCCCCTACTCCTGCCCTTGTCCCTGCCCCTGTCCCTGCTCCtactcctgcccctgcccttgTCCCTGTCCTTGCCTTGGCCCTTGCCCCTTCTCCTGCCCTTGCCCTTAGTCCTATCGCTGCTCCTGCCACTGTTCCTACCACTGCTCCTGCCGATGATcctgcctctgcccctcccACTGCCACTAACATTGTCTCTTCCTCTatctcacccccttcctctacccctACCCATAGCCTCACCCCTACCTCTACATCTACCTCTGCCCATGTTCCTGCTCCTACTCCCGCCCAAGCCCCCAGCTCTGTTCTCATCCCTGCCCCTCCTTCAGCCCCTGCTCACACCtctacccctaccccttcttCAGTCTCTGCCCCTGCTGAAGCACCTACACCTACCATCTCAGCTTCAGTTCTCCCTAATCCAAATCCTACCTCTGTGTCAACTGCTGGTCAGATTATTGACAACTCCATGGTAAGTCAAGAGGAATATGCGGCCCATACAGTGCCCAGTCAAGACAATTCTCATTCCCAACATACCGTGGACACAGTGAGCTTGACTGATGTAACAGCTATGTTATTGGAGGGTGCCTTTGAAGGTGTGAGGCCTATCAGTAATTCAGCTGCAAGTTTGTGCCGGTTCTGTCAAGAACCATTCAGTGGTACTGACCTCTTGCGGAGACATGAGCGTCTTTATTGTAACCAGAAGCCATCATTAATTAAACACAAGCAGCCATTGCAGCCTCAACAGCAGCTCCACATTCAACTAAATTCTCAGCAACCTCCACAGCCTTCTGTTGATACTCCTCTACCTACTGGAGGACACACTCAGCATCATTTAATTTTGCATCAGCAACAGTCCCAAAGCATTGGAAACCTGCCAGCAGCTCAACAACCAACTGAGCAAGCAGACCAACAAATAATCTATAGCCAAAGAGTGGTCATTGAAGCAACGCCCATGGAAGTACCAAGATCATGTAAATATTGTCACAAAGACTTCATCCACAGGGGTAGCCTATGGCGCCATCAGATGTTCTGTGATGCCAACCCAGAAAAAGACCTCAATAGAATTGTAGcaggaagtaaaaaaaaagtggttGTTGCAAAGAGCTGTAATCAGAGAAAAGATGTGCAACAGCATAATACCATACCGGTTGTTGCTAATCATCCTAACAATTCTGGTGGAACCCAAATGCGTCGTGGCAGCATAAATCAACCTAATTCAGGTCCACTCAAATGTAAATTTTGTGAGAAAAGATTCCTTCATCGTGGCAGTTGGTGGAGACatcaaaaaatgttttgttcgGTGAATCCTGAGATACCCACAGTAAAAGCCGAGTCAAGGGTCAGAAGTGTTCAAGAAACTGCCACCTTTACCTGCAGACACTGTGAGAGAACATTCCTACATCGTGGAAGCTGTTGGCATCATGAACAAACACACACTGGCATTAAAGAGCATGCGTGTCGTTACTGTTCAAAGACATTCAATGAAAAGTCCAGACTAGCTCGTCATGAACGGATGCACCTTGGTATTAAACCATTTTCTTGCCGCCAGTGTGGTAAGGCTTTTTGTGATGCCTCCAATCTCAGAAATCATGAGCAAATCCATGGTGACCGAGCTTCATTTTTGTGTGCTTGGTGTGGTAAATCATACACTCGCAGAGCTCTTCTTTTGAAACATGAGCAAGTCCACGCAAGAGAAGGACAAGTTTTCCAATGCCCTTTGTGCCCAAGAACTTTCCCAAATCCAGATATATTAAATGAACATACCATGTCTCATACCGAAGAAAAGAGACGACTATACTTTTGTCAAACGTGTGGTCAATCTTTCCGTTCACAGCGCTTACTCTCCCAGCATAGTGAGCTAAACCACAACCAAGTTCACACATCTCAGCAGACTCAGCAGGCTCTGCCAGCTCAACAGGCTTCAATAGTCAACCAAGCCCACCTAGGTCAAGAGTGTAGTCTTCACAGCTGTACTACTTGCAACAAATCCTTTGCAGACTTATCTGCTTTGCGGCAGCATGCATTACTTCACAGCATTGAATCAAAACCGTATCGGTGCTCCCAAAATGCTTGCAATGCTGTATTTCATGAACAATCACAACTTGAAGCACATCTTGTCTTACATGGAAGTGAAAAGACCCATTCAATCACTTTAAGTACAAATTCTAGTTTCCAGCAACAGCAGgaccagcaacagcaggaccagcaacagcagcaagatcagcagcagcaacttatATCTCATGAAATTCAACATCAGCATACTTTACAGCAGCATGAATTAATACATCGTGAAGAAGCCTATGTTATTGAAGATCAGGATTTGTCAGGACAAACAATTGCTGTGCACCATCTTGTTAGTCAAATTCCATAG
- Protein Sequence
- MYHDAISELLSDDEVADISSSRIRKRNRCISLLESMKRVQQAQTAVSANSSHSDQLPTEWMEQSKTTQANDSNVSSTLSSALECRFCAKPFVYESTLIEHEELHAKGVVTDNDSIEDVEQIGHKEHVGHEQLVPSSTPQPTRQTSTPIPILSPDPVSASAPVIPTSVSAVAPPSIPSAASASSPTAEPSSAPAPVVDPIPTHTSTSSLAPTPALVPAPVPAPTPAPALVPVLALALAPSPALALSPIAAPATVPTTAPADDPASAPPTATNIVSSSISPPSSTPTHSLTPTSTSTSAHVPAPTPAQAPSSVLIPAPPSAPAHTSTPTPSSVSAPAEAPTPTISASVLPNPNPTSVSTAGQIIDNSMVSQEEYAAHTVPSQDNSHSQHTVDTVSLTDVTAMLLEGAFEGVRPISNSAASLCRFCQEPFSGTDLLRRHERLYCNQKPSLIKHKQPLQPQQQLHIQLNSQQPPQPSVDTPLPTGGHTQHHLILHQQQSQSIGNLPAAQQPTEQADQQIIYSQRVVIEATPMEVPRSCKYCHKDFIHRGSLWRHQMFCDANPEKDLNRIVAGSKKKVVVAKSCNQRKDVQQHNTIPVVANHPNNSGGTQMRRGSINQPNSGPLKCKFCEKRFLHRGSWWRHQKMFCSVNPEIPTVKAESRVRSVQETATFTCRHCERTFLHRGSCWHHEQTHTGIKEHACRYCSKTFNEKSRLARHERMHLGIKPFSCRQCGKAFCDASNLRNHEQIHGDRASFLCAWCGKSYTRRALLLKHEQVHAREGQVFQCPLCPRTFPNPDILNEHTMSHTEEKRRLYFCQTCGQSFRSQRLLSQHSELNHNQVHTSQQTQQALPAQQASIVNQAHLGQECSLHSCTTCNKSFADLSALRQHALLHSIESKPYRCSQNACNAVFHEQSQLEAHLVLHGSEKTHSITLSTNSSFQQQQDQQQQDQQQQQDQQQQLISHEIQHQHTLQQHELIHREEAYVIEDQDLSGQTIAVHHLVSQIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -