Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763002.1:983827-992494[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.21 11 6.5 0.2 2 19 173 190 172 192 0.95

2 16 0.00091 0.049 14.0 0.2 2 23 224 245 224 245 0.96

3 16 0.00073 0.04 14.3 2.7 1 23 277 299 277 299 0.97

4 16 0.0034 0.19 12.2 1.2 1 23 368 390 368 390 0.97

5 16 2.5 1.3e+02 3.2 1.4 2 23 645 666 644 666 0.93

6 16 0.0024 0.13 12.7 0.8 2 23 673 695 672 695 0.93

7 16 0.086 4.7 7.8 0.1 2 23 702 724 701 724 0.92

8 16 2.5 1.4e+02 3.2 5.0 1 23 731 753 731 753 0.92

9 16 0.00047 0.025 14.9 0.3 1 23 759 782 759 782 0.95

10 16 0.028 1.5 9.3 0.7 2 23 787 808 787 808 0.97

11 16 0.00059 0.032 14.6 4.3 1 23 815 837 815 837 0.96

12 16 0.27 15 6.2 4.1 1 20 843 862 843 865 0.94

13 16 5e-05 0.0027 18.0 0.7 1 23 871 893 871 893 0.98

14 16 1.7e-05 0.00092 19.4 4.8 1 23 899 921 899 921 0.99

15 16 5.4e-06 0.00029 21.0 0.4 1 23 927 949 927 949 0.98

16 16 0.2 11 6.6 2.2 1 23 955 978 955 978 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.21	11	6.5	0.2	2	19	173	190	172	192	0.95
2	16	0.00091	0.049	14.0	0.2	2	23	224	245	224	245	0.96
3	16	0.00073	0.04	14.3	2.7	1	23	277	299	277	299	0.97
4	16	0.0034	0.19	12.2	1.2	1	23	368	390	368	390	0.97
5	16	2.5	1.3e+02	3.2	1.4	2	23	645	666	644	666	0.93
6	16	0.0024	0.13	12.7	0.8	2	23	673	695	672	695	0.93
7	16	0.086	4.7	7.8	0.1	2	23	702	724	701	724	0.92
8	16	2.5	1.4e+02	3.2	5.0	1	23	731	753	731	753	0.92
9	16	0.00047	0.025	14.9	0.3	1	23	759	782	759	782	0.95
10	16	0.028	1.5	9.3	0.7	2	23	787	808	787	808	0.97
11	16	0.00059	0.032	14.6	4.3	1	23	815	837	815	837	0.96
12	16	0.27	15	6.2	4.1	1	20	843	862	843	865	0.94
13	16	5e-05	0.0027	18.0	0.7	1	23	871	893	871	893	0.98
14	16	1.7e-05	0.00092	19.4	4.8	1	23	899	921	899	921	0.99
15	16	5.4e-06	0.00029	21.0	0.4	1	23	927	949	927	949	0.98
16	16	0.2	11	6.6	2.2	1	23	955	978	955	978	0.95

Sequence Information

Coding Sequence: ATGTCAAAAAGGCGAAATTCGAAAAAGGTGAACAGGAAGGTTGACGAAGTTATTTCCTTAGGACCTCCCCCCGAAAATTCTTGCTTTATTTGTGATGGAACAGTCAAGAAAAATGGAGTGCAAATTGTTTTAGGACGCACTCCTTATTCAAATGTTGGTCTGCCTGCTAAAATTGGACAGCTTATTGGAGACAATTTCATGGTGGTGGTTGGAGTAGCAGACATTATGTGTGCACGATGTGCATCTTTAATAAGCCAGCTTGACAAACTTGAAACAGATGCTCAAACAGTTAAGCAAACCCTTACAGGTTTTATTGCTTCAAAATATCAACTTAACCAAAATGAAATTTGTGCTAAATTCGATAACAATGAAATAGAATGTGTTTTTGATCAGCATCAGGAGACGACTCATAGCAAACCTGACAAGTTTCCTGTTCAGTTTATGGGAACTGAGAGCAAAAGGAAATCTGAACAAGTGAGCTTATTatctacaaaaaagaaaaaaaacataagTATCACTTGCAAGAATTGCAACTTTTGTACAGCAGATGAAGATGCATTGCAAATTCACTCTGCACTTTGTTTGAAACAAAACAACCTATGTTCAGACTGTGGCGCTCACCTTGGTGACCCAGCAGACAAAAATACAGGAAGGTTTGCATATTTAGGATCTTGCAAAGTCTGCTCTATAAATTTTGATGATGAAGAGAAGTTGACAAAACATATGGCAATACATACCAGATACTTAAATACATGTAATGTGTGTAATTTCACAAGTTTAAAAGATGATATCTTGGCCAAACACCTTTTGACACACAGTGTTCAAAGTTATCACTGTGCTATATGTCAGACTAGCTTTAATCAGAAGAAAAATTTGTATGGGCATTTGGAAAAGCATTTGGTTCAAGAAAAATGTCTGAAATGCTCCATTGAATTGTCTTCTCAAAATAAGTTGTTAAGTGAGTTAACACTAGGTTGTTTGAGTGAAGAAAATACAAGTTGCAATAATCAAGTTGACTCAAAAGGAAAACTTGAGAATGACTACATGGAATCTCTAATGCAAGTTGATAATTTTGACTCTGATGGGAGCAACATTGAATTCCACCCCTGTCCAAGTTGTGGTTTAACTTTCCTCAACAAAATGTTATTTACAGAACACATGAAGATGCATAATGAAAATAAGCATCAAGACCATTTAGATATTACTGAAGCACATGATGATGTTCTTAAAAGTTCTTCAGTGTCTGTAGCAGGAGACTGTTCTATCGATGATGACCTAGAAGATTTGTTTGAAAAGCTTCATGCTGAAACAAACTCATCCCATGCCTCTGTTCAAACTGTTGCAGAAAAAAGTAGTTGCGTGAGTAGTCAAGCAATGAGTGTTACAAGCAGTGCACACATTTCTGCTGGTCCTCTTAGAGATGAAACAGTATTCTGTGGATCTTCAAACATAGACTCAAGAAATGAAATGCTCCATCTGACGTCTAAAATAAAAGATAATAAAAAAGACCAATTAGCTCTTGAAACTGATCATAACTCATTAAGTAACAACTTAGAATCTCTAGGTTTTAATCCATTTGAGACATCTCTCATAGTAAAGGAGAAGATTGACAATGGTcaattaacaacaaatttgatgGATTCTGCTGAGCAGCACAACTATATTTACATCAGCAATGCTCTTGATGGTATTCCTGATTGTCAGTCTCAGAATGGTATGGTGCTACACAATGCCACAATAGATCCAAATAGTGGTAATATTCAGTTACTCCCATTTGTAATTGATGATTCTGCTGGTAGTATTATTCTTGAAAGTAATGTCAGCAATCTTCATGAAAATGAGTTATTTGAGCAGAATTTTTGCAAGATGAAGCCAGAACCAGAACTGGCTCAAAACAATCTGGAAGCTGGACATTCCGAAACTAGTGTTCTTTCTTGTGATTATTGTAGTTTTCATACATCAATCGAACTTGTGTTAAAGAGACATCTGAAAGTACATCAGGGAAATCTGGTTCAAAAGTGCTCCATATGCAATAGGGTGTTTTCATCAACACAACGACTGCTCACACATATTGATTTACGCCACAAAAATGCTGACGCTATAAAGTGCCCATTCTGTTCTCAGGAATTTGACAATTCTTTACCATTACGAGAGCATTTAGCCCAAGAACATTCTATGGGGAAGCGTATCTTCTCATGTCGCTTCTGTTCTAAAATGTTTCCAACTAGGAAGTCATGTACTAGTCATGAAGAAAACCACTCTGaggtttttaaattttcatgtaaaattTGTTTGAAAAAGTTCACAAATGAAGATGATTTGGATGACCATGTGAAGTGGGACCATAACAAAGCTGGGCAATGTCGTTATtgtgggaaaaaaattgaaaaagccAAAGCTTTAAAATACCATGAGTTACGTCACATGCAAGAATCAAACCACCACCAATGCCAAGAGTGCAAACGAATTTTTAAAACCAAAACTGGCTTAAGACATCATGCGGCATCACACACAGGTCAATTTAAATACTGTTGTGATTTCTGTGGTAGGGGATTTATGTCTCGAATGATGCTTGAGGAGCACCGTAGTTGTCACACGAAAGAAGAAAGATATGTATGTGATGTCTGTGGTCAAAAGTTTACATTTCAAAGCACGTATTGGATTCATAGAAAGTGGCATGAAACTCCATACCCCTACAAATGCAGCTTTTGTGGACGCTTTTTCAAGCATTCATCTTTACTTGCAGTTCATAAACGGAAACACACAGGAGAGCGCCCTTATAAGTGTCCACATTGTCCATTAACATTTCCTGTCAGTGGAACTCTTAAAAGACACATAATTTTGCACACTGGTGTCTACCCTTTCAACTGTGATTCATGCAAACGAGGTTTTACAGCTAGACATAAATATGCATCACATTTAGAAAAGGTTCATGGCATAAAAGACTTCACTGGTCAAAagtttttggaaaatttgaaactaGACATTACTGACAAGAGCATACCTGACAAGGTGAAAGAATGGGAGTTTGATACGGAGAGCTTTCCAACCTTAAGTTTGGTAGAGTCACCTGTAGTTCGCAGTAGAGATCCTCTGATAAGTGACCAAAATATACAATCTAGAGTTGTTGAAATTGTATTAGATGAATCGTATCAACCAGTAGCTACAGTCACTCTTGGTGGTGCGGAGCCCATGATACCTGAAAATTGGTATGATTAG
Protein Sequence: MSKRRNSKKVNRKVDEVISLGPPPENSCFICDGTVKKNGVQIVLGRTPYSNVGLPAKIGQLIGDNFMVVVGVADIMCARCASLISQLDKLETDAQTVKQTLTGFIASKYQLNQNEICAKFDNNEIECVFDQHQETTHSKPDKFPVQFMGTESKRKSEQVSLLSTKKKKNISITCKNCNFCTADEDALQIHSALCLKQNNLCSDCGAHLGDPADKNTGRFAYLGSCKVCSINFDDEEKLTKHMAIHTRYLNTCNVCNFTSLKDDILAKHLLTHSVQSYHCAICQTSFNQKKNLYGHLEKHLVQEKCLKCSIELSSQNKLLSELTLGCLSEENTSCNNQVDSKGKLENDYMESLMQVDNFDSDGSNIEFHPCPSCGLTFLNKMLFTEHMKMHNENKHQDHLDITEAHDDVLKSSSVSVAGDCSIDDDLEDLFEKLHAETNSSHASVQTVAEKSSCVSSQAMSVTSSAHISAGPLRDETVFCGSSNIDSRNEMLHLTSKIKDNKKDQLALETDHNSLSNNLESLGFNPFETSLIVKEKIDNGQLTTNLMDSAEQHNYIYISNALDGIPDCQSQNGMVLHNATIDPNSGNIQLLPFVIDDSAGSIILESNVSNLHENELFEQNFCKMKPEPELAQNNLEAGHSETSVLSCDYCSFHTSIELVLKRHLKVHQGNLVQKCSICNRVFSSTQRLLTHIDLRHKNADAIKCPFCSQEFDNSLPLREHLAQEHSMGKRIFSCRFCSKMFPTRKSCTSHEENHSEVFKFSCKICLKKFTNEDDLDDHVKWDHNKAGQCRYCGKKIEKAKALKYHELRHMQESNHHQCQECKRIFKTKTGLRHHAASHTGQFKYCCDFCGRGFMSRMMLEEHRSCHTKEERYVCDVCGQKFTFQSTYWIHRKWHETPYPYKCSFCGRFFKHSSLLAVHKRKHTGERPYKCPHCPLTFPVSGTLKRHIILHTGVYPFNCDSCKRGFTARHKYASHLEKVHGIKDFTGQKFLENLKLDITDKSIPDKVKEWEFDTESFPTLSLVESPVVRSRDPLISDQNIQSRVVEIVLDESYQPVATVTLGGAEPMIPENWYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -