Focc015091.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- pho
- Assembly
- None
- Location
- ML762982.1:354344-357899[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 0.83 10.1 1.0 2 16 139 153 138 161 0.78 2 12 9.3e-05 0.0051 17.1 3.4 1 23 178 201 178 201 0.96 3 12 0.092 5 7.7 0.2 5 23 210 228 209 228 0.96 4 12 0.089 4.8 7.7 0.0 3 23 249 270 249 270 0.96 5 12 0.006 0.32 11.4 1.3 1 21 275 295 275 296 0.96 6 12 0.34 18 5.9 3.0 1 23 312 335 312 335 0.88 7 12 0.00028 0.015 15.6 2.4 1 23 410 432 410 432 0.96 8 12 0.00011 0.0058 16.9 0.8 1 23 438 460 438 460 0.97 9 12 0.0011 0.058 13.8 0.2 1 23 466 488 466 488 0.95 10 12 8.6e-06 0.00047 20.4 1.0 1 23 494 516 494 516 0.97 11 12 1.4e-05 0.00077 19.7 2.3 1 23 522 544 522 544 0.98 12 12 0.00049 0.027 14.8 1.5 1 23 550 574 550 574 0.93
Sequence Information
- Coding Sequence
- ATGAATTTCCACCCGATGCAGATGCTCGATTTCTCCAAAACATGTCGCCTGTGTTTGACCCAAGACTACGATTTGATACCAATATCAACGCAAACCACTGACAGCTCGTCAATTGCCCTCGCATCAAAAATTACTTCGACTGTGGCTTTAGAGGTATGTGAGGGGGATGAATTGCCTGCACAAATCTGTGGAAACTGCTTTCAAAGAATCGACCAATGGTATAGCTTCAAGCAAGTCTGTCACAACTCTTTCTCAGTTCTTCGACAGTGCGTCAAACAAACTGACAAGAAGGATATGAATCAAATGGATGACACCTTATGTGAGCATTTAGCTGCGGCGGTTGCTGAAGACCCAGAGAAGGCTGGGTTTTTACTTGGCCCTCCAGGCCCGACCGATGATATGTCAAGTCATTTATCGTGCCAAGTCTGTGGGAAAGTATTTTCACGATATAACAACAGAGTGTTTCATGAAAAGAAATACCACAGTGTTAAGGGCTCAACAATGAAAATGAAGGGTAAGGAGAAAGGGGATTTCACCTGCAAAGTGTGCTCCAGAGAATTTTGTCGTCTGGATAATTTGAAGACCCATGAGCTGCGAATGCATTCCAATGGAAGATCATTCTTTTGTGATTGTGGTTCTGGTTTTGTTCGAAAGCAAGATATGATATGGCACCAAAATCAACACGTGAAAAGTTCAAGTCCTGGTCTTGCTCCAGCGCCTGAAGAATTAGACAAAACTTTGGGATGTCCTATCTGTGCTCTCCCTTTCCCCAAAATTGAAAAACTGAATGAGCATATGGAGCTGTCACACATGGATTCTAAATTTCAGTGCAATATTTGTTTAAGTAAATTTTACAATAAGGAAGAGCTTTTATGGCATCAAAAACATACAATGGTTccatctgctgcagcagcttcttCCAGTTGGTCCCATTTCATTTGTAATATCTGTAatcataatttttcaaacatCAATATGTGTAAATCTCATATAGTACGAGTTCATGGCACACCCTCTGCATTGAAAAGCAATTCAtgttgtcaaaattttgtctttAGTGGCAAACAAGACATCGATGGTGAAGGTGAAAAGAAAGAAGTTATTACTAAAGCTCATAGATCAAGATCTGGTGATCCATATTTTTGCAGCTGCTGTGGTAAAGAATTTGATAAACATGGTCGCTCTAGTGGTTCAGGTGAAAAACGCCAGCATTCTGGAAGTAAAAACCACATATGCAAGGAATGTGGCAAATCATTTCTCACATCTTCAAGATTAAAGACTCACACCCTCATCCATACTGATGTAAAGCCATTCATATGTGAAGTGTGCCAGGGTAAATTCCGTACCCTCAGCAATCTACTTGCTCACAAGAAGCGGCACACCGCAGAGCCTAAATATGTTTGTAAAACCTGTGGTAAAGAATTTTTATCTTACTCCGGTCTTGCTAGACATGAAATACTTCACACTGGTGTTAAAGACTTTGCTTGTGAGGAATGTGGCAAAACTTTTGTCACCCTACAAGAACGCCGGAAGCACATGAAGtatcacacaggagaaaaatcTCATGTCTGCAAATATTGTGACAAAGCCTTCTTTGAGAGTGGTCATTTAGCTATACATTTACGTTCTCACCTTAATGAGAAGCCGTATTCATGTGTTGTTTGCTCACGGTCATTCGACTCCACCACTAAACTTAAACGTCACAAAAAGACTGATGCCCATATGCGAAGAATGAATGTAAATCAGCCACCAAGAGAAACCTCAAGGTCAGAATGGACAACCAATAATTATGTGTATAATGAAACATTGGTTGCTAATGGAGGGCCTAGTATTTACCATATTTGA
- Protein Sequence
- MNFHPMQMLDFSKTCRLCLTQDYDLIPISTQTTDSSSIALASKITSTVALEVCEGDELPAQICGNCFQRIDQWYSFKQVCHNSFSVLRQCVKQTDKKDMNQMDDTLCEHLAAAVAEDPEKAGFLLGPPGPTDDMSSHLSCQVCGKVFSRYNNRVFHEKKYHSVKGSTMKMKGKEKGDFTCKVCSREFCRLDNLKTHELRMHSNGRSFFCDCGSGFVRKQDMIWHQNQHVKSSSPGLAPAPEELDKTLGCPICALPFPKIEKLNEHMELSHMDSKFQCNICLSKFYNKEELLWHQKHTMVPSAAAASSSWSHFICNICNHNFSNINMCKSHIVRVHGTPSALKSNSCCQNFVFSGKQDIDGEGEKKEVITKAHRSRSGDPYFCSCCGKEFDKHGRSSGSGEKRQHSGSKNHICKECGKSFLTSSRLKTHTLIHTDVKPFICEVCQGKFRTLSNLLAHKKRHTAEPKYVCKTCGKEFLSYSGLARHEILHTGVKDFACEECGKTFVTLQERRKHMKYHTGEKSHVCKYCDKAFFESGHLAIHLRSHLNEKPYSCVVCSRSFDSTTKLKRHKKTDAHMRRMNVNQPPRETSRSEWTTNNYVYNETLVANGGPSIYHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732104;
- 90% Identity
- iTF_00732104;
- 80% Identity
- -