Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763088.1:610216-615925[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.2 4.4e+02 1.5 1.4 14 23 222 231 219 231 0.87

2 9 1.4e-05 0.00074 19.7 1.5 1 23 237 259 237 259 0.98

3 9 0.0001 0.0056 17.0 3.2 1 23 265 288 265 288 0.96

4 9 0.14 7.6 7.1 3.2 1 21 294 314 294 316 0.95

5 9 0.00037 0.02 15.2 1.5 1 23 326 349 326 349 0.97

6 9 3.3e-05 0.0018 18.5 2.5 2 23 356 377 355 377 0.97

7 9 0.00014 0.0074 16.6 0.3 1 23 383 405 383 405 0.99

8 9 1.4e-06 7.4e-05 22.9 2.5 1 23 411 434 411 434 0.97

9 9 1.9e-07 1e-05 25.5 0.5 1 21 448 468 448 469 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.2	4.4e+02	1.5	1.4	14	23	222	231	219	231	0.87
2	9	1.4e-05	0.00074	19.7	1.5	1	23	237	259	237	259	0.98
3	9	0.0001	0.0056	17.0	3.2	1	23	265	288	265	288	0.96
4	9	0.14	7.6	7.1	3.2	1	21	294	314	294	316	0.95
5	9	0.00037	0.02	15.2	1.5	1	23	326	349	326	349	0.97
6	9	3.3e-05	0.0018	18.5	2.5	2	23	356	377	355	377	0.97
7	9	0.00014	0.0074	16.6	0.3	1	23	383	405	383	405	0.99
8	9	1.4e-06	7.4e-05	22.9	2.5	1	23	411	434	411	434	0.97
9	9	1.9e-07	1e-05	25.5	0.5	1	21	448	468	448	469	0.94

Sequence Information

Coding Sequence: ATGAGCActatcaaagaaaaaaaaacatCACAAATAAAGCTTGAAGCTACTTCGAGTGAGACAATCACAGATATTCAAAACTATTTAGACAATTTTAATAAAGAAATCCAGACAGGAGATGGAACAACTATTCAACCTCTTACAGATGTTCAAACAATAGTGCCTGATCCTGACACTCCAAGCGATGGAACCTACTTCATGGATGAGAATGGTCAATACTATTTTCAGTCTAACCCCAACGAAAATCCTGTACTTGTTTCTGGCATTCCAAATGCTGCACCTGCTTCAAGTAGTCAAACAACATATGTTGCAATGCAACCCCAAGATAATCAAAATCAAAGTGGTACTGTGGCGTCTCTTCAAACTGTTCAAGATGGACAACGGATGATTTTGAACCCTGGTGATTCTTACCAGACTGTCACCATTGTTCCATCTGACACTAACCCTGGTGAAGTGAGTTATGTTCTGATAGTACAACAGCCTGAAGAtgaaaaagaagatgaagaggatgaggatAAGAATGAGGATCAAGATCTCACAGTGTATGACTTTGATGAGGGTGAAGAGGGAGGCCCCAGTTTGGAATCGGGAGATGAAGATGATAAAACAAAGATTGTAAAGATAATGCCAAAGAAATCTCAGACTGTTACTCAAGCTCATATATACCTCCTATCTCGTCACATGAAATCTCATTCAGAAGAACGACCTCACAAATGCAGTGTTTGTGAAAGGGGCTTTAAAACCCTTGCCTCTCTTCAAAATCATGTTAACACCCACACTGGAACAAAACCACACCGCTGCAAATTCTGTGACAGCAGTTTCACTACATCAGGTGAACTTGTTAGGCATGTTCGGTACAAACATACCCACGAGAAACCTCACAGATGTAGTGTTTGTGACTACGCCAGCGTGGAGCTGAGTAAAATGAGGAACCACATGAGATGCCATACAGAAGAAGTCGGAGATAAGCCAGTCTACAGATGTGAACTGTGTCCTACTACATGTGGTCGTAAAACTGATCTCCGAATCCATGTCcagaagttgcacacttctgaCAAACCCTTAAAGTGCAAAAGATGTGGTAAAACATTCCCTGATAGATACACTTACAAGGTTCATAACAAAACTCATGAAGGAGAAAAATGTTATAAATGTGACTTGTGTCCTTATGCATCAATATCTGCTAGACATCTGGAATCTCACATGTTAATCCATACTGACCAGAAGCCATATCAGTGTGATCAATGTGATCAGTCATTCCGTCAAAAGCAGCTTCTGAAGAGACACCAAAATCTTTACCATAACCCTCAGTATGTACCACCCTGCCCCCGTGAGAAAACACATGAATGCTCTGAATGTGGGAGAACCTTCCGGCACAAAGGGAATTTAATTCGTCATATGGCAGTGGAAGTTATGCCAGAAGATGGTGATAtggaagatgaagatgaggatgaagacGATGAAAATAGTGGTCAAGGAATGATGGCTGTGGAGGGCTCTGATGGACAACAGTATGTTGTTCTGGAGGTCATTCAACTCCAGGATGGTGACGGACAGGAACAGGCTCTAGCTGTTGTTACTGGTGATAATATGGCTCATAACGCTATCAATAACCAAGGAGATGATGATAGTGATAGTGGAGAGCTGATAACTGGGCATCATCCTCCTTTGACAGAGGAACAAATGTTACAAGTTCAAAAGATGGAGACCCAGCACAGTAGAAAAACTATGGACACCAAAAGTGACATGCAGAATTGTTTTGGCTTTGATTCAATTGTATTAGGCAAAGATCATGGTGATAAATTGGATGACTGCCATTGTTTCATAGTGTAA
Protein Sequence: MSTIKEKKTSQIKLEATSSETITDIQNYLDNFNKEIQTGDGTTIQPLTDVQTIVPDPDTPSDGTYFMDENGQYYFQSNPNENPVLVSGIPNAAPASSSQTTYVAMQPQDNQNQSGTVASLQTVQDGQRMILNPGDSYQTVTIVPSDTNPGEVSYVLIVQQPEDEKEDEEDEDKNEDQDLTVYDFDEGEEGGPSLESGDEDDKTKIVKIMPKKSQTVTQAHIYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSSFTTSGELVRHVRYKHTHEKPHRCSVCDYASVELSKMRNHMRCHTEEVGDKPVYRCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYTYKVHNKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDQCDQSFRQKQLLKRHQNLYHNPQYVPPCPREKTHECSECGRTFRHKGNLIRHMAVEVMPEDGDMEDEDEDEDDENSGQGMMAVEGSDGQQYVVLEVIQLQDGDGQEQALAVVTGDNMAHNAINNQGDDDSDSGELITGHHPPLTEEQMLQVQKMETQHSRKTMDTKSDMQNCFGFDSIVLGKDHGDKLDDCHCFIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -