Focc006080.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML762978.1:1638438-1644867[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00089 0.048 14.0 2.1 3 23 169 189 168 189 0.99 2 13 0.00081 0.044 14.1 2.4 1 23 200 222 200 222 0.98 3 13 3.1e-05 0.0017 18.6 0.7 1 23 228 251 228 251 0.97 4 13 1e-07 5.4e-06 26.4 2.3 1 23 257 279 257 279 0.99 5 13 1 55 4.4 2.9 1 23 707 729 707 729 0.97 6 13 0.0079 0.43 11.0 4.7 2 23 736 757 735 757 0.93 7 13 0.024 1.3 9.5 0.7 3 19 766 782 765 782 0.96 8 13 0.76 41 4.8 2.3 2 19 915 932 914 934 0.91 9 13 3.4e-05 0.0019 18.5 0.4 2 23 1022 1045 1021 1045 0.96 10 13 8.4e-05 0.0046 17.2 1.7 1 23 1051 1073 1051 1073 0.98 11 13 2.5 1.4e+02 3.1 3.2 2 23 1467 1485 1467 1485 0.73 12 13 5.9e-06 0.00032 20.9 2.6 3 23 1493 1514 1491 1514 0.94 13 13 8.7e-05 0.0047 17.2 1.9 1 21 1521 1541 1521 1542 0.96
Sequence Information
- Coding Sequence
- ATGTCTTCAGTGTTGGCAGCTCTGAGACCTTTCGCCGCAACCGGAAACGTATCCTTCATAGTTTTGTGgAAACTATGTGCTATAAATCGTCAAATGAAAACGATTTCATCTAAGGAAAATAACTTAATCTCAGGACTACTACTTTCATTGCCAGTAGGACGACCTTCTGCAAGTGGAAAGGGGCTGCATTCAAAAGATGAAAATTCCATAAAAAGTAAAGATGATGAAGTTAAAAATGAGCCTCCGGATAGGGGCTTTCATGAAGAAGTTCACATTAAAATTGAAAGGGAGGATGATGACACTGTTTTATATGCCCCCATGAACGTGGATGAAGGGATAGTgattaaaaaagaagaaagtgatGACTCCATGGAAGAAGATGAAGGATCAGATGATGACATTTTGGATGTAGTAAATGGGAGGCTTGATGGAATTGACAATGAAAAAGCAGGTGATGTGATTGACATTTCAGATGACCCCAACAAAGCACTTAAGTCTCTGTTATGTAAATTTTGTGGAAAGCAATTTTTTCGAGCATTCTATTTTAACTTGCACATTAAAACTCATCAAGTTCCAACCCCTACATCTGATAAACCCCATAAATGTTTAGATTGTGGTAAAAGTTTTGCATTATTACAACATCTCACTGGTCACTCAAGAATTCATATTGCTGGCCGATATTACGAGTGTCCTGTCTGTAGGAGAAAATTTACTGAATTGTCTAACCTTACTATGCATTTGTTAAAAACACATCCTGATGAAAAGCCGTATAAATGTTCAGAATGTGAGAAGCAATTTACTCAGTCTTCTGCTCTCAAGAAACATTTGAGAACACACAGTGGCATCACATCGCAAGATGAATTAGACCGCATTGACATGCAGTTTTTTGTGAACGACAAAAATGAAAGAGATTCAGAGGAGCCATTAAAGAAGAAGATTAAGCTTGAGAAAGAGGAAATAACATCACCTGTTAAAGAGAAATCGCCATGTGGGAAAGAGAGATTAAAAGATGAAAAGTCACCAACTACTAAGGAGAAGGTTGTGCTCACCAAACAAAAATCTGCACCAGTTGGGGAATTGAAAGTGACTAAAGCTTCACCCCCATCAACAAAGGGCATTAAGTCTCCAACACAGAAAGGAACTGAGATTATGAGCAAAACATCACCTGTCAAAGACAAAATGCCAAAGTTAAAAGAGAAGTCaccaaaagaaaagaagtttcCTTCCCCTCAAGGAAAAGTCTCTGCTGTTAAAATAAGCTCTACAGGATTTGATGTATTACCTGCTATTAAGCATTTGGAAGGTCAGCCTGCACCATCCAAAGACCAATCTGCACTAATTAATAGAAAATCACCTATCAAAGATATGTCAAAACAATTGGAAAGCATATCCATGTCAAGTAATGAAGTACATGTTAAAGATGAGCCGTCACATGAGAACTCATCTGAAGTTTCCAAAAAATCTCTTTTATTAGAGGACTCACTGCCAGTGAAGGTTGTTCTTTCACCAATGAAAGAATCTCCTTCAGAAGAAGAACCATTAATCCCATCTGAAGCTTTACTTCTCCATATCAAAGAAGAGTGTCCTGACGATGAGCATAGCGCTGATCACACACCCTCTTTCACTTCAAATGTGTTAAAAGAGCCCATGTCTATATTGAGTGAACTTTCAGAAGAAACAAGTCTCACCCATGTTGAAGGAGAAGCTGCAGCTCAGAATGAGAATAATTCAAAAAGTGGAACTTCCCCTCTTAATAATTTCAATGATTCCTCACTTAATCGGAATGGTGTCCCACTAGATTTAGTTCACTGTCCAAAAATCAAGGTAACAAAGTTTTCTGAAACTGAACAAGTCAGTGAAAACCAGAAGGTCCATGGGATAGTTCCTATGACCTCTCCAACTAAATCCACATCAGTCACAAACGTTAATAGACTAGAATCTCAGAACAGTAATGAAGATACTGAAAATTTAAACCAAATGTCGGTATCAAAGGACTCAAAACCAGCCTCATCCACTCTCCATAAATCTCAGTGGTTTAAAAGTTGGGACAGTAATAAACTTGATAAGAAAGAGCCTTGGCCATCTAAAGGAAAGCCTGATGGCCCCTGTGAAGAAAGGTATAAATGTCATAGATGCAACATTTTTATGGATTCTGAAGAGCAACTTCATGAACATCTGATGGAGCATACTGGTGTAAAACTTTGTGAATGTCGATTCTGTGGGAAGGATTTCACATCCATGACTTCTTTGAAACGACACACCTACTATCATGTTGCTGGATTGATTCCTCAGGATTGCACGAGATGTGGTAAAAATTTCTCTACATTTATGGATTTGAAGGACCACTGTGTTAGCAAAAAGTGTGATGCATCTGGGAACACGTTCCGTTTTAAATGCTTTCGATGTAAGAAACACACTCCATCTTTAGAAAGACTGAAGTTTCATCTTCTGTCTCAGTGCAATGAAGAACCAATCAAGTATTATATTCCAAAAAAACTTGATGACATTGCTTCAACAAAGTCCACCGAAAGTCAAGCTGAAAATAATAGATCTGATAAAGACAATACTGGCTCTAACTTGTATAATTGCAATAATGAGTGGGTAAACCAGAAATTTGAGAAAAGTGAGTGTCTTAGTTTAGATGACATGGTACAGTTAAATTTGAAAGGCAATGATGTTGAAGCATTGCAAGTTTTAAATGAACTTGGTCCTTCTGATAGAGGAAAAGAATGTTGGAATTTGCAATGTGAAAACTGTGGTCATAGATTTGAAAATTCTGAGAAGGCTAAGGTCCATTGTAAATTGGGATGTGAAAAAGTACCAGAAGTGAAACAAGAATCTGAGAATGGAGATGATGCAGAACCATCACAGCAACTTGCAAAGGAACCAGATAATAAACCTGAGAACAATGCAGAAGTagaaaatgttaaaataaaACTGGTCGTTGAAGAGGATGAAGACCTGCAGTGCTATTTGGACTGTGCAGTGTGCGGGAAGGAAGTTGCTGGAGTTGAAAGAATGCTGCTTCATATCAAAGACCATATTAATGAACGGAATACACTTGAATGCCCAGTGTTAAAATGTGGAAGATTTTTCACTGACCCAAAGGATTTTAAATTGCATCTCAAGACCCATACTGGTCACAAACCCTACAAATGTTCAGATTGTggtaaaagattttttttgcgAGAGAACTATGAAAATCATGCTCAACGTCATGGTGTATTGAAGCATTGGAGTTCATTAAACTCAAATGAAAAAACTGGTAAAAATTCTGGAAGTGCTAGAAGCCCTATTACCATTGAATCAAGCATTAGTAATTTGGAAGTTTCAGAAGCAGATTTTGACAAAAAGCAACGTAAAACTTCGAACATTAGTTCTCAAGCAAACAGAAATCGTGCTGATTTACATTCTAAGGAAAATAGAAAACAAGAAGTCCCTATCAATCTGAACAAGAAACCAACTTCTGATAAACCATCTTCTAAACTGAAGAAATCATTACCAGCAGTAAACAGGTCTACTCCTCCTGTTAGTAGAACTGCTCCTTCAGTAAATAAACCTCTGCCTTTGGTGAACAGACCCTTGCCAATTATTAACAGGCCCTTACCAACTATAAACAGACCTTTACCAATTGTGAACAAGGCCTCACCAACTATGAACAGACCTTCGCCAATTGTGAACAGGGCCTCACCAACTGTGAACAGACATTCACCAATTGTGAACAGACATTCACCAATTGTGAACAAGGCCTCACCAACTGTGAACAAGGTCTCACCAACTGTAAGCAAGGTCTCACCAACTGTAAGTAAGGTCTCACCTATCCAGAACAGGACTTCACCAATAATGGACATCATATCACCAGTTATGGAAGATAATCCGTCACCACCAATGCCAACTATGAGCTTATCTCTGCCATCCATGAACAGGCCCATAGTTACTAGACCTATACCAGGCCTGATATcatcagctgctgctgtcaTCAGACCTACATCTTTGCTGCAAGGTAGTATTGTTGGTAGACTTACAGGTCCTTCAGGTGGGTCATTATCGGTAACCCCTCAAGGAATTTTCACAGTTGTGCCCCCAAGATCCTTCACATTATCACCACCAAGCAGTAGCAAGCCTACATTTACTATGGTAAGAACTAAACAAGAAGTCCGACAAGATTTAAGACAGGAATTCAGACAGGAAAAAAGacaagaaataaaacaagaaataaaacaagaaataagAACAGAAATAAgaacagaaataaaacaagaaataaaacaagaagtACCCCATAGAGAGATGAGGCAATCTCGTGCTCATCCATCAGCGTATTACAAACTATCCGACCAGGCTAGAGCTACTATTCAGGCATCTAATGCGGAGTTACGGAAGTACCCCCGATCTGGAAGATGTGATATATGCAAGAAGACTTGTTCCCGCCTTGACAAACATATGATGGTGCATCTGAATCAGAAACCTCACCTTTGTCCAGTTTGTCCTCAAACATTCAGACAAAGTGAACACCTAAGGCGTCATATCAGAGCTAAGCATGAAGGCAATCATAGACAGTTTGAGTGCCCTCAGTGTCACAAAAGGCTAACAAGAAAGGACAAACTTAAGGAGCATATGAAGAATTGTGGTATACGGCCATATCCCGACAGCTATTCTCCAACTTTGAGTGATAGTTTATTTGACATGATTCCTGGACCCTCGGAGACTTCCTATCAAGGCCATACAACAGTATGA
- Protein Sequence
- MSSVLAALRPFAATGNVSFIVLWKLCAINRQMKTISSKENNLISGLLLSLPVGRPSASGKGLHSKDENSIKSKDDEVKNEPPDRGFHEEVHIKIEREDDDTVLYAPMNVDEGIVIKKEESDDSMEEDEGSDDDILDVVNGRLDGIDNEKAGDVIDISDDPNKALKSLLCKFCGKQFFRAFYFNLHIKTHQVPTPTSDKPHKCLDCGKSFALLQHLTGHSRIHIAGRYYECPVCRRKFTELSNLTMHLLKTHPDEKPYKCSECEKQFTQSSALKKHLRTHSGITSQDELDRIDMQFFVNDKNERDSEEPLKKKIKLEKEEITSPVKEKSPCGKERLKDEKSPTTKEKVVLTKQKSAPVGELKVTKASPPSTKGIKSPTQKGTEIMSKTSPVKDKMPKLKEKSPKEKKFPSPQGKVSAVKISSTGFDVLPAIKHLEGQPAPSKDQSALINRKSPIKDMSKQLESISMSSNEVHVKDEPSHENSSEVSKKSLLLEDSLPVKVVLSPMKESPSEEEPLIPSEALLLHIKEECPDDEHSADHTPSFTSNVLKEPMSILSELSEETSLTHVEGEAAAQNENNSKSGTSPLNNFNDSSLNRNGVPLDLVHCPKIKVTKFSETEQVSENQKVHGIVPMTSPTKSTSVTNVNRLESQNSNEDTENLNQMSVSKDSKPASSTLHKSQWFKSWDSNKLDKKEPWPSKGKPDGPCEERYKCHRCNIFMDSEEQLHEHLMEHTGVKLCECRFCGKDFTSMTSLKRHTYYHVAGLIPQDCTRCGKNFSTFMDLKDHCVSKKCDASGNTFRFKCFRCKKHTPSLERLKFHLLSQCNEEPIKYYIPKKLDDIASTKSTESQAENNRSDKDNTGSNLYNCNNEWVNQKFEKSECLSLDDMVQLNLKGNDVEALQVLNELGPSDRGKECWNLQCENCGHRFENSEKAKVHCKLGCEKVPEVKQESENGDDAEPSQQLAKEPDNKPENNAEVENVKIKLVVEEDEDLQCYLDCAVCGKEVAGVERMLLHIKDHINERNTLECPVLKCGRFFTDPKDFKLHLKTHTGHKPYKCSDCGKRFFLRENYENHAQRHGVLKHWSSLNSNEKTGKNSGSARSPITIESSISNLEVSEADFDKKQRKTSNISSQANRNRADLHSKENRKQEVPINLNKKPTSDKPSSKLKKSLPAVNRSTPPVSRTAPSVNKPLPLVNRPLPIINRPLPTINRPLPIVNKASPTMNRPSPIVNRASPTVNRHSPIVNRHSPIVNKASPTVNKVSPTVSKVSPTVSKVSPIQNRTSPIMDIISPVMEDNPSPPMPTMSLSLPSMNRPIVTRPIPGLISSAAAVIRPTSLLQGSIVGRLTGPSGGSLSVTPQGIFTVVPPRSFTLSPPSSSKPTFTMVRTKQEVRQDLRQEFRQEKRQEIKQEIKQEIRTEIRTEIKQEIKQEVPHREMRQSRAHPSAYYKLSDQARATIQASNAELRKYPRSGRCDICKKTCSRLDKHMMVHLNQKPHLCPVCPQTFRQSEHLRRHIRAKHEGNHRQFECPQCHKRLTRKDKLKEHMKNCGIRPYPDSYSPTLSDSLFDMIPGPSETSYQGHTTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -