Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763012.1:1910979-1920480[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.6 2.5e+02 2.3 0.7 1 19 83 101 83 105 0.91

2 17 3.3 1.8e+02 2.8 0.9 1 23 113 138 113 138 0.85

3 17 4.7e-05 0.0025 18.0 1.5 1 23 144 167 144 167 0.97

4 17 6 3.2e+02 2.0 0.1 1 16 672 687 672 692 0.76

5 17 0.77 42 4.8 0.1 1 19 979 997 979 999 0.86

6 17 2 1.1e+02 3.4 0.5 1 23 1009 1034 1009 1034 0.85

7 17 8.4e-05 0.0046 17.2 0.5 1 23 1040 1063 1040 1063 0.97

8 17 0.0081 0.44 11.0 0.5 2 23 1208 1229 1207 1229 0.96

9 17 8.8e-05 0.0048 17.2 0.1 1 23 1237 1260 1237 1260 0.97

10 17 0.00055 0.03 14.7 0.0 1 23 1266 1288 1266 1288 0.97

11 17 0.00021 0.011 16.0 0.2 1 21 1295 1315 1295 1316 0.93

12 17 1.8 96 3.6 2.2 1 23 1383 1405 1383 1405 0.97

13 17 0.0053 0.29 11.6 0.2 2 23 1418 1440 1418 1440 0.95

14 17 5.3 2.9e+02 2.1 0.1 3 11 1457 1465 1457 1468 0.87

15 17 4e-06 0.00022 21.4 1.9 1 23 1499 1521 1499 1521 0.99

16 17 5.9e-05 0.0032 17.7 0.1 1 23 1527 1549 1527 1549 0.97

17 17 1.2e-05 0.00067 19.9 2.3 1 23 1555 1577 1555 1578 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.6	2.5e+02	2.3	0.7	1	19	83	101	83	105	0.91
2	17	3.3	1.8e+02	2.8	0.9	1	23	113	138	113	138	0.85
3	17	4.7e-05	0.0025	18.0	1.5	1	23	144	167	144	167	0.97
4	17	6	3.2e+02	2.0	0.1	1	16	672	687	672	692	0.76
5	17	0.77	42	4.8	0.1	1	19	979	997	979	999	0.86
6	17	2	1.1e+02	3.4	0.5	1	23	1009	1034	1009	1034	0.85
7	17	8.4e-05	0.0046	17.2	0.5	1	23	1040	1063	1040	1063	0.97
8	17	0.0081	0.44	11.0	0.5	2	23	1208	1229	1207	1229	0.96
9	17	8.8e-05	0.0048	17.2	0.1	1	23	1237	1260	1237	1260	0.97
10	17	0.00055	0.03	14.7	0.0	1	23	1266	1288	1266	1288	0.97
11	17	0.00021	0.011	16.0	0.2	1	21	1295	1315	1295	1316	0.93
12	17	1.8	96	3.6	2.2	1	23	1383	1405	1383	1405	0.97
13	17	0.0053	0.29	11.6	0.2	2	23	1418	1440	1418	1440	0.95
14	17	5.3	2.9e+02	2.1	0.1	3	11	1457	1465	1457	1468	0.87
15	17	4e-06	0.00022	21.4	1.9	1	23	1499	1521	1499	1521	0.99
16	17	5.9e-05	0.0032	17.7	0.1	1	23	1527	1549	1527	1549	0.97
17	17	1.2e-05	0.00067	19.9	2.3	1	23	1555	1577	1555	1578	0.96

Sequence Information

Coding Sequence: CTGGTTCTCAACGAGGGCGACACAACTCGTCGCTACCGCTGCGCTGTGCACCGCGGTAGGTGCAAGGCCCTGGTCGAGGGTggcgacggcgcgctgctgcagcactggAGGGACAAGCACTTGGCGGCCGGGGCAACGCTCGACCCCTCCAAGATCAGTGCGCACGAGCTCAATAACGAGCTTGCTCAACACGTGCTGGATCTACCGCGAAAGGCGGTTAAGCAAGCCTACCGCGTGCCCGAAGGGTTTCGCTGTGCCGTGTGCTCGAAGGTGCTTGGACATGTGAGTAGACTGTTATCCCATGTACCTCATCACTTGGACCATCCCCCGGAAAACTATGTCTGTAGCCTATGTCCTCAACGAGTGGCGTATTTTGAGCTGTCATTGTTGTTGCACCACTACCGCACTCAGCACAAAAATGAAGACCCTTATCGGTGTGACTTGTGCAACAAAGGTTTTAAGTATTTGAACCTCCTGAAGGTTCACATGAAGCAAAACCATAGTCACTTCGCGAACTGCGCCAACGATCAGAGTGGTCTTCTGGACGAGAACGAACAGGACCCTCTGCAGGTCTGCCGCCTGGACGACGAGTGCGAGGACGTGAAGccctcgccccccacgcccgccTGGCTTGCCGCGCAGCCCTCAGAGGCCCCGTCAGGATCCACAGCCACCCTGCTCCCACCAGAGGGCGTCGCGCGCCCATCCACGcctggacccgccgccgctgtcgagGTAGAAGCTACGGCGGACACGTCAGCTCTGCGCATCCCGAGCACCCGCGAGGCTGTGCAGGAcgacagcgcggggcgcgcggcagcgcctAAAATTAAGAAGAAGATCGGCCGTCCACGTAAGAAGAAGCGAGGCCGTCCACGTAAGAATGTCACGGAGTCGCTGAAACTGGGGCACGGAGTCGCGCGGGCGAGAGAGCTCAGCGCCGTCGCCAAGCCTTCCGAGCCGAACAGTTTTATGCTCCATAAGCAACCCCTTGCCCCGGAAGACTCTAAAAGCGATGCAGCCCAGGCCTCCAAGAATCGCTTCAACAAGGGGCCGCAGCCGCTGGTGCTCGATGAGGGCGACACTACCCGCCGGTTCCGCTGTGTCAAGTGCAAGGACCGGGTCGAGGGCGGTGATGGCGCGCTGCTCGACCACTGGAGGCGCAAGCACTTGGCGGTGGGGGCAGTACTGGACCCGTCCAAGATTACTGCGTATGAAGTCAACGACGAGCTGGCTCAAACCGCGCTGAATCTCCCGCCCACGACGCTTGCGCATAACTACCGCtgctTGTTGGTATATGCACGTTCTGCCGTTGACTCAAGTCACTTCGCGTACTGTGCCAACGATCAGAGTGGTCTTCTGGACGAGAACGAAGAGGACCCTCTGCAGGGCTGCTACCTGGACGACGAGTACGAGGACGTGACGCCCTCGCCATCCGCGCCCTcctgcctcgccgcgcacctttTGGAGGACCCGTCAGGATCCACAGCCACCCCGCTTCTACCCAAACGCCGCGGGCGACCACCCACTGTCAAAGTGGAAGCTACTGCGGACGCGTCAGCTCTGCGCATCGCGAGCTGCCATGGGGCTGTGCAgggcggcagcgcagggccCAAGAAGAAGCTCGGCCGTCCCCGTTCAAATGCCGTAGACAAGGCCAGGGCGCGGGCCGAAGTCAAGGCCAGGGCaagggcccgggccagggccagagcaGAGGAGGCCAAGGCTAGGGCCGAGGTCCGGCGGGATTTCAAAAACCGCGTCAACAACACGATCCAGCCGCTGGTCCTCGAGGAGGGATTCACCACCCGCCGCTTCCGCTGCCGCAAGTGCAAGGACCTGGTGGtcggcgacggcgcgctgctgcggcactGGGGGGAGGCCCAcctgccggcgggggccgcgccggacccCTCGGTGGTTGCGGCCCACGAGCTCGACGACGACCGGGTCCGAGGCTTGCTGGATCTGCCCCGGAAGAGCCTAGCGGACACCtgccgcgtgcgcggcgggttcAGCTGCCCCATCTGCGCCAAGGTCATCACTTCTGTGTCGAGAACAATATCTCACCTTTATTGTCACATGGAGAGTCCGCCGCTCAACTATGTCTGCACCATGTGTCCGGATGGCGTAGCTTTTTATGAGTATTCAGGCCACTTTGTATACTACACGAACCCAATGAGCCTGAACTACATGGACGAGAACGACCCGCTGGAGGACGACGAAGACTACGAGGACGTGGACGCCTGGTCCCCCGCGCCTTcgtcctccgcggcggcgtcgccaacGCCCCCCGCCGTGGACCCCCTCATGACCCCGGTGGTGTCGCGAGCGGCGTCGccctcggcgtcggccccgcgccgctcccccaggaagggcgccgcggccgtgcaaGTGAAGACTGAGCCCGGGCCGtcccgcctccccggccgccacgcctgcTGCGTGCCGGGGGCGCCGTGCGACGCGCACAGCGACGCCGTGGCCAACGTCATCGCCCAGTTCCTGCCGCAGCCCACTCGCCCGCCCAGGAACGGGCACGGGGTCGCGCGGGCCAGGAGGCTCGGCACCATCGCCAAGAAGGCCAAGCCCTCAAAGGCGACCAAGTTCAGGCGCCAGAAGcagcccctcgccccggccgacTCGGAGGGCGAGGCTGCCAAGTCCAACAAGAAGTCCTTCAACAACAGGCCGCAGCCGCTGGTGCTGCACGAGGATGACACCTCCCGTCGCTTCCGCTGCCGCAGGTGCAAGGGCCTGGTCGAGGGCGGCGACCGCGCCCTGCTCGACCACTGGAGGCGCAAGCACCTGGCGGTCGGCGCGAGGCTGGACCCCTCCCAGATCACCGCGCACGAGCTCAACGAGCAGCTCGCGCAAAACGTCCTGGACCTTCCGCGAAAGACATTGATGAAGACTTACCGCGGGCCAGGAGGTTACCGATGCCCCGTGTGCTCCAAGGTGATAACTATGGTGCAGAGGCTTAGGACTCACGTGTATTGTCACATGGAAAACCCGCCAGAGAACTTTGTTTGTAAGGTGTGTCCCACACGCACCACCTTCTATGAGTATTCAGGGATGTGGCGCCACTACCTACAATGGCACAAAAATGCTAAACCATACGCTTGTGAGTTTTGTGATCAGAGCTTTAAATTGCCAAGCCTCTTAAATGATCATGTTAGAAAATACCATAAAGATAAAGTTATATTGAAAGGTTTTATTGTGGCTCCTAGTGGCATATTCCCCGGTTCTTCTGTGGAGTCTGACTCTGAGCCTTTCCTGAATCATCAGTATCTTCAACCAATTCTTATCAAGACTAACTTGGGCAGGCCATGTGTGCTTCACAACAGGTACAAGTACCGAAAAAAACCACCAAGAAAGGCCTGGAGCTGTTGTGCAAGCACTTGCAATGCCAAAGTGATCATGAGTGATGACTGCAATGACGCCCTGCCCTGGGGCGACCTGCCGCTGGACTGGCCGACCCAGAACGGCGACCAGGGCGACGCTCTcggggacgcgggcggcgccgacgaccgCCCGCTCAACAGCAAGGGCCTGGTGGTGGACGAcacggccgtggcggcgctgctgagccgcCTGGGCGACCCGCGCTCCAGCGACACCCAGTGCGGGCTGTGCGGCCGCGTGCTCTCCAACAAGAAGCGCCTCCGCGGTCACCTCATGCAGCACGTGACGACCAAGCCGCGGCCGTACGCGTGCACCGTGTGCGGCTTTGCCTTCCCCGAGTACAGCGCCCTCTACCGCCACATGAAGGTGCAGCACAAGAACGTCAAGCCGTACACGTGCCAGGCGTGCGGCGAGGGCTTCCGCCTCCCCTCCGAGCTCAAGGCGCACGCCAAGGAGCACCGCGGCACGGGCGGCCTGCACATGTGCACGCTGTGCGGCAAGACGTTCGTCGTGGAGGGCAACCTGCAGTGGCACTACAGCACCGTGAGTATGGACGACCTGGAGGAGAGCGACGTGTGGAACGCCCTGGTCAAGGACGAGCCCGACGGCTCGGAGGACATCGAGGCCGACTTCGAGGCGGACATCGAGGCCGaagtggagctggaggagggcgaCGCCGACGAGCTGTCGTCGGCGGCCGACGAGTCGGTgagcccgggccgcctgggGCGGCGACGCACCTACAAGTGCCGCGTGTGCCGCAAGCACATGGGCTCCATGTCGATCCTGCAGCGCCACATGGTGACGCACACGGACGAGGAGCGCAAGCAGCAGCCCTTCGCGCGCCAGTGCGAGCAGTGCGGCCGCGTGCTGTCCTCGCGCCAGCGGCTCGAGTCGCACATCAACGCGGTGCACATGCAGGGCGACAAGAAGCAGTCGAGCTACGTGCGCCAGAGCCTGGGCTGCCCCGTGTGCGGCAAGGTGCTGTCCTCCATGCAGCGGGCGcacgagcagggccagcaggcgccgtggccgcggcagcgcgccccgcgggccagcggcggcggcggcgcggcggccggcaatCCCTTCCAGTGCACGCACTGCGGCAAGGTGCTCTCGAACCGCACCTCCCTCAACGTGCACGTGCGTTCCCACACGGGCGAGCGGCCCTACCGCTGCACGGTGTGCCCCGCCGCCTTCACGGACCTCAGCAactggcggcgccaccgcgtcGTGCACACCAAGACCAAGCGTTACCAGTGCCAAGTGTGCCAGGCGCGCTTCTCCCAGAGCGGCAACCTGCGCATGCACGTCCGCAAGCACCACCCGGAACTCAACTGA
Protein Sequence: LVLNEGDTTRRYRCAVHRGRCKALVEGGDGALLQHWRDKHLAAGATLDPSKISAHELNNELAQHVLDLPRKAVKQAYRVPEGFRCAVCSKVLGHVSRLLSHVPHHLDHPPENYVCSLCPQRVAYFELSLLLHHYRTQHKNEDPYRCDLCNKGFKYLNLLKVHMKQNHSHFANCANDQSGLLDENEQDPLQVCRLDDECEDVKPSPPTPAWLAAQPSEAPSGSTATLLPPEGVARPSTPGPAAAVEVEATADTSALRIPSTREAVQDDSAGRAAAPKIKKKIGRPRKKKRGRPRKNVTESLKLGHGVARARELSAVAKPSEPNSFMLHKQPLAPEDSKSDAAQASKNRFNKGPQPLVLDEGDTTRRFRCVKCKDRVEGGDGALLDHWRRKHLAVGAVLDPSKITAYEVNDELAQTALNLPPTTLAHNYRCLLVYARSAVDSSHFAYCANDQSGLLDENEEDPLQGCYLDDEYEDVTPSPSAPSCLAAHLLEDPSGSTATPLLPKRRGRPPTVKVEATADASALRIASCHGAVQGGSAGPKKKLGRPRSNAVDKARARAEVKARARARARARAEEAKARAEVRRDFKNRVNNTIQPLVLEEGFTTRRFRCRKCKDLVVGDGALLRHWGEAHLPAGAAPDPSVVAAHELDDDRVRGLLDLPRKSLADTCRVRGGFSCPICAKVITSVSRTISHLYCHMESPPLNYVCTMCPDGVAFYEYSGHFVYYTNPMSLNYMDENDPLEDDEDYEDVDAWSPAPSSSAAASPTPPAVDPLMTPVVSRAASPSASAPRRSPRKGAAAVQVKTEPGPSRLPGRHACCVPGAPCDAHSDAVANVIAQFLPQPTRPPRNGHGVARARRLGTIAKKAKPSKATKFRRQKQPLAPADSEGEAAKSNKKSFNNRPQPLVLHEDDTSRRFRCRRCKGLVEGGDRALLDHWRRKHLAVGARLDPSQITAHELNEQLAQNVLDLPRKTLMKTYRGPGGYRCPVCSKVITMVQRLRTHVYCHMENPPENFVCKVCPTRTTFYEYSGMWRHYLQWHKNAKPYACEFCDQSFKLPSLLNDHVRKYHKDKVILKGFIVAPSGIFPGSSVESDSEPFLNHQYLQPILIKTNLGRPCVLHNRYKYRKKPPRKAWSCCASTCNAKVIMSDDCNDALPWGDLPLDWPTQNGDQGDALGDAGGADDRPLNSKGLVVDDTAVAALLSRLGDPRSSDTQCGLCGRVLSNKKRLRGHLMQHVTTKPRPYACTVCGFAFPEYSALYRHMKVQHKNVKPYTCQACGEGFRLPSELKAHAKEHRGTGGLHMCTLCGKTFVVEGNLQWHYSTVSMDDLEESDVWNALVKDEPDGSEDIEADFEADIEAEVELEEGDADELSSAADESVSPGRLGRRRTYKCRVCRKHMGSMSILQRHMVTHTDEERKQQPFARQCEQCGRVLSSRQRLESHINAVHMQGDKKQSSYVRQSLGCPVCGKVLSSMQRAHEQGQQAPWPRQRAPRASGGGGAAAGNPFQCTHCGKVLSNRTSLNVHVRSHTGERPYRCTVCPAAFTDLSNWRRHRVVHTKTKRYQCQVCQARFSQSGNLRMHVRKHHPELN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -