Focc003956.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- ZBTB40_2
- Assembly
- None
- Location
- ML763204.1:53971-59329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.6 1.4e+02 3.1 0.0 3 23 113 133 111 133 0.92 2 14 0.27 15 6.2 2.2 2 23 145 166 145 166 0.97 3 14 2.5e-05 0.0014 18.9 1.3 1 23 400 422 400 422 0.98 4 14 0.011 0.6 10.6 1.1 1 21 426 446 426 447 0.93 5 14 8.5e-05 0.0046 17.2 0.4 1 20 453 472 453 475 0.93 6 14 0.031 1.7 9.1 4.7 1 21 479 499 479 500 0.94 7 14 0.00046 0.025 14.9 0.5 5 23 515 533 512 533 0.93 8 14 0.00067 0.036 14.4 0.2 1 20 579 598 579 599 0.95 9 14 2.4e-05 0.0013 18.9 1.8 1 23 606 628 606 628 0.98 10 14 9.1e-05 0.0049 17.1 0.9 1 23 633 655 633 655 0.96 11 14 8.3e-05 0.0045 17.3 0.3 1 23 661 683 661 683 0.98 12 14 4.1e-05 0.0022 18.2 6.1 1 23 689 711 689 711 0.98 13 14 0.0041 0.22 11.9 3.2 1 23 717 740 717 740 0.97 14 14 2.7 1.5e+02 3.1 6.3 1 23 745 768 745 768 0.94
Sequence Information
- Coding Sequence
- ATGTGTCTTGTAGCCCCAGCCTCTAATACCAGCGAACAAAATCTTATATGTTATGACGTCAAACAAAGCATTTATTTTGCTACAACAAGAGATCTAGAACCAGGAGAGGAACTACGTTTGTGGTATGCATTGTACTATGGACTGAAGCTTCAAGCCCTACCTTTGTCTGATGAATCAGCCCAAGAGGATGGTTTTTATGACCTGATAGATGAGGAGAAGCAGGGGAAATCAAATGGTGGTGTGTGTATGATGCTAGGGGATGATCTTCTCCAAACATTAACTGAACACTTACCAGCTCATGCCCTTGGAGCTTTTGGAGAAAGGGATGTATGGATATGCAAGTTGTGTGGGGTACAAGAATCAAACGTGGCAAGCTATGCTCGCCACCTTATGGTTCATTATCGCCAACCATTGCATAATAATCGACATCCACAATGCACTATCTGCTTTCGGCGTTTCTTCAGTAAAAAGATATTGGACAACCATTTACTGAAACATGAAAAATGCAATATGTCGGACATCGAAACTTCAGAAACAGCCCTTAATAACAGCATTGAATATAAGCAGTTCCCTGAAAATATTAATGGGGCAGAAATACCCTCATGTGAAGAAACAACAGATGGAGGCACAGTTTATAACAACGGAGTTTTAAATGATGACAGTAAAAATGCACACATTAATAGatcaaaaagttatttttgtcaTGAGAAAGAATCattattaaatttaaataatGGTGGCAAAGGTGAAAATGCTGAAAATGAATCTGAAGAGGAACAATCTGAGGTGTCTCATTCATCACCTGATAGCTTTATTAAACCGAAAGGACTTGATATGACTCTTAACCCAAAATTACATGAAGAAAATGTTGGAAATCTTATTTCATCAACACAAATTAGTAACACAGAAGACTTGGTGATTCATTCAAGCAATGGACAAAGCTTTGCCACATCCATCAATTTACGCTCATCTCAAGACATTGATCTTGCTTTAGAAAATGGAGAACCTTTAACGTTTGTGATGGTTGAAGCAACTGATAAAAACGACCTACCATCTGTTCCTTTTGTAGATAACTGTGTCAAATTGAAAGACACTTCATCTGTGAACAACTTATCATCTAACACTGAGGAATTATCAAATGCAGATGTTTCTAATGAACAGTTACATCAAGAGCCATCTGAAAAACAAAGAACTTTGTTTAACTGTGATATATGCGAAAAGTCTTTTAGCAAAGGTGCCTATCTTTATCGACATCTCCGCAAGCATACTGGTGAGTTTACTTGTGTGACCTGCTTAGCTGTGTTTGCTCgtaaagaaaatttgaaaactcaCTCCTGTACCCAGCCTAGAGAATGGTTTCCGTGTCCTACATGTGGAAGAAAATTTTCAGCCAAAAAATATCTTCAGAGACATGTTCCTATACACACAGGAGAGTTCACTTGTTCAGAGTGTAACCGCCATTTTGTGTCCAGACTTTCCCTAAAATACCACAGATGCAATGTTAGTAGAAATAAATCTGGAAATGTTACCATTAACTGTATAATGTGTGACAGAATATTTAGTACAGAATCAAAGCTAAGAGCACATCTAAAGGTTCATTCTGATCTAAAATCAACAGTTTTTAATAAACCCATGTTTTTAAAATCATCTCATAATGTTGAAAGGCTACTTAAAAGAAAAGATGTAAAGGATAACAGTGAAAAGCAACCAAACAATATATCTGGAGGAAAGGTATTTATTTGTGAAATTTGTGGGGCCATATTTAAAAGTTCATCAAGTATGAAGACACACAGGTTTTGTCATGGAGAGAGGAAGTTTGAATGTAGCATATGTGGAAAAAGGTTTCATCGGAAGGATGTACTACAAGAGCATTCAAGAGTTCATGAGGAAGCAAACTTTCCCTGTGAGCTATGTGGCAAGAAGTACAAAACTAAGAAATCTCTCTATGTCCATTCGCTTATTCATGAAGGGTCCAAGAGGTTTTCTTGCGGTGTTTGTGCAAAGGAATTTTTCCAAAAAGGGAACCTAATTAAACACGCACAAACTCATACTTCTTCAAGAATATACTGCTGTCAGTATTgtaaaaaatcattttcttcAAAGGAATATTTTAATATTCATCAACTGACTCATACTCAAGGGAATATCTACAACTGTGATGAGTGTAAAAGAGGCTTTGTTAAGAAACATTTACTGGACACTCATCGACAGTCATTTCATTCAAATCGTGGATTTCTCTGCAAATTCTGTAATACTCTTGTACGGCACAGGCATTCCATGCGTCGTCACTTAGAAAAGAGTCATAATGTGCTCCGTGACAAATGGTCAATGCCTGGCTTCATTGATATTTTGCAGACTGAACTTCCACCGAACTTGTTATCTTCTTTTGGAGATGCAAAATTAACTCCTAAAGAGCAACAGGAAAGACAGCACCAAATAGAACTTTTGAGGAAAAAACATTTCCAAAACAAAGTGGCGTCAAGTTTAGGTCCAACATCCGAGTTTGCATATGCTTTGGTACCAGAATCACAACCAAATCAGTTTACCTTGAGTGATCCCATAATAATGCTTCAACCATCACAGCAGTTAGCACTTGTCAACAATATCCAACCTGGCAATCAGGATGAAACATTTCAAGCTACTAGACAGCTGCAAATGGATTCAGAAGATGCTCCAGGTGAAGTAGTTTTCACTTTGGTGAATCAAGAAAGTTCTCCGAATAGCCCAAGCAATACAACCCCACTTCTAAACTCATCTTCCCTTGCAAGTACTATTACTGACTTTGATTCAGGAACCACGTACCTGATGGAAAATGGACATGGTAATGAGAGCATACTTCTGTATGTAGTAGAGACTTCAAATGGAGAAGATGACAATTCAGAGGATTTTTACATGGTGCAGTAG
- Protein Sequence
- MCLVAPASNTSEQNLICYDVKQSIYFATTRDLEPGEELRLWYALYYGLKLQALPLSDESAQEDGFYDLIDEEKQGKSNGGVCMMLGDDLLQTLTEHLPAHALGAFGERDVWICKLCGVQESNVASYARHLMVHYRQPLHNNRHPQCTICFRRFFSKKILDNHLLKHEKCNMSDIETSETALNNSIEYKQFPENINGAEIPSCEETTDGGTVYNNGVLNDDSKNAHINRSKSYFCHEKESLLNLNNGGKGENAENESEEEQSEVSHSSPDSFIKPKGLDMTLNPKLHEENVGNLISSTQISNTEDLVIHSSNGQSFATSINLRSSQDIDLALENGEPLTFVMVEATDKNDLPSVPFVDNCVKLKDTSSVNNLSSNTEELSNADVSNEQLHQEPSEKQRTLFNCDICEKSFSKGAYLYRHLRKHTGEFTCVTCLAVFARKENLKTHSCTQPREWFPCPTCGRKFSAKKYLQRHVPIHTGEFTCSECNRHFVSRLSLKYHRCNVSRNKSGNVTINCIMCDRIFSTESKLRAHLKVHSDLKSTVFNKPMFLKSSHNVERLLKRKDVKDNSEKQPNNISGGKVFICEICGAIFKSSSSMKTHRFCHGERKFECSICGKRFHRKDVLQEHSRVHEEANFPCELCGKKYKTKKSLYVHSLIHEGSKRFSCGVCAKEFFQKGNLIKHAQTHTSSRIYCCQYCKKSFSSKEYFNIHQLTHTQGNIYNCDECKRGFVKKHLLDTHRQSFHSNRGFLCKFCNTLVRHRHSMRRHLEKSHNVLRDKWSMPGFIDILQTELPPNLLSSFGDAKLTPKEQQERQHQIELLRKKHFQNKVASSLGPTSEFAYALVPESQPNQFTLSDPIIMLQPSQQLALVNNIQPGNQDETFQATRQLQMDSEDAPGEVVFTLVNQESSPNSPSNTTPLLNSSSLASTITDFDSGTTYLMENGHGNESILLYVVETSNGEDDNSEDFYMVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -