Focc006948.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763078.1:259386-276018[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.2 11 6.6 2.3 3 23 8 28 6 28 0.97 2 15 0.86 47 4.6 0.6 1 19 733 751 733 751 0.86 3 15 0.00044 0.024 15.0 1.4 3 23 886 907 884 907 0.96 4 15 0.00017 0.0093 16.3 0.8 1 23 912 934 912 934 0.98 5 15 4.2e-06 0.00023 21.3 0.5 2 23 937 958 937 958 0.97 6 15 0.00024 0.013 15.8 3.3 1 23 964 986 964 986 0.98 7 15 9.1e-05 0.0049 17.1 2.9 2 23 993 1014 992 1015 0.95 8 15 3.9 2.1e+02 2.6 2.4 5 23 1028 1046 1027 1046 0.95 9 15 0.0017 0.091 13.2 3.3 2 23 1052 1074 1051 1074 0.96 10 15 0.029 1.6 9.3 0.1 2 23 1090 1110 1089 1110 0.96 11 15 6.3e-06 0.00034 20.8 1.7 1 20 1116 1135 1116 1138 0.92 12 15 0.004 0.22 11.9 5.5 1 23 1146 1168 1146 1168 0.98 13 15 0.01 0.56 10.7 10.0 1 23 1174 1196 1174 1196 0.98 14 15 1.4e-06 7.5e-05 22.8 4.9 1 23 1202 1224 1202 1224 0.99 15 15 0.001 0.054 13.9 6.4 1 23 1230 1252 1230 1253 0.96
Sequence Information
- Coding Sequence
- ATGGGGTCAGGCAATGTGTGCTGTCCAGTATGCAGGCAGTTCTTACCCAAGGCTAAGTCTCTTCATGAGCACCTCAACACTCACCCTAAACTACAAGTTATTGAGGCATTAATACAGTTAAAAGATGCTTGCAAAGATTTTGAACCCTCTAGCTCTGTACAACAAAAAGATTACTCGCCCCTGGAAAGTCCAGAAGGGGATGATGAGCGGGTCGAAAATGCTGTTGATATAACTACTCATTCATgcactcctcctgctcctccacatGATTCTGATGAGGAAGGTATTCATGAGACTCGGAATAATACAGAAGGTGCTATAGATCTACATGTTGACtcagaaaatgaggaaaaattgcCCCCTACGTCTGTAAAGTATGCGCTGCAACAATGCGCACCATCCTCTTCAACAAGCAACCTTTCCCCGTATCCTCAGTTTTTGACTGGTTCATCCCCAGTGGCACAATTCATTCATGTTCCAGTAGTTACAAGTGCCGTCCCTAattctgccccccctccctcaactcAGcagGCACCAGTGGTACTATACAGTCCATTTGTGTGTCCACCCAGCACTTCTGTTGCTTCATCATCATATTCCAGCCCTTTGAATCTTGCTCAGCACTTGCAATTTCTTGTGGGCAACAGTGTGGTGAGGTCACCCTTTAGTATTATTCAAGCCCATCCCTCTACTGAACCTTCCCAAACTGGGCATGTAGCATTAAAATCTGAAGTTTCATCAAGAAATAATTCGCTCACCGTATCGAGCAACATCAATCCAAAGCCAGCAAGCACTGCTGCAGAGAGCCTTTCAGAAGATTGGGTTGCTCCAGGTGACAGTTCAACATCATTAGTGTGCTCTGAATCGCCAGTAACTGATTCAGAGGAAAACAGCCTTCATGAAAACCTTAGGGAAGACGAGGAAAAAGTGTCAGATCAATTAGAAAGTGCACCAGAAACAGCCTCATATGTTTCAGAAGTTTTAAAAGCTCAGGTATCAACTGTAAAACACTGCAATGAGCCCCATGTTCTGATGTCAGACCTTCCAGAGTCAGAGACACTTTCAACAGGACCTGAATTTACTTCATCTCTCGAACATCGGACACCTCAAGAACAAGATTTGCTCACTCCACCAAAGAAGCGGATATGTTTTTCTTTAGGCTCACCCAGTAGGCATTCACCTACTGATCAATTTCAAGAAGTTTCCCCTAGTAGAATTGCCCAGGGGTCACCTCGAGCATTGTCTAACTGGAATAATCTAGGATCTCCAGGGGCCCATTCAACCAGCAGTGTTGAAGGTGTCCTGAGAGTTCGGTCAGATCTCAATGTTTCTCTTGGCCATTCAGTTTCCATTCCTTGTGAGGAAAAAGATGAAAATTGGGCACAAACAAATCTTAAGAAGGAAGCACACCAAAGTAATGCTGCTGTTAAAGACTTGTCTGCTGCATGTGACATTGATCACATGCCAAATGACCTCAGATCTAATGCTGAGAAAAACATAACATTTGGAAATGTAATCCTGACATGTTTAAAGAAATCATCTGGAAATAATACCAACAATATTCAGGGTAAAAATGAATTTGAATTCATTATACCAGATGTAGTTACAGAGTCATACAGTGACTTCCAGGATGATAGATCACTAAGTAGGGCAGGGAGCCCCCCATGCGATTCGGCACCCCCATCACCATATCAAAAATCACTTGATTCACCTTCCACCCCTCTGAATATTCAAACCGATGAGACAATGCCCCCAAGAGGGGAACTCTCTGAACAAGAGAGTATTGGGGGAAACAGTAGTTCCATGTGGTCTGTACCGGCATATCACATTACTCGACAACTCCCATCTCCAGTTGTTTCATATGACTTGACAGCAAGAGAAAGCTGGGCAGGTTCTGATGTTTCTGATAGCGAGGGCAATGCGAATGTTGGTGATAACCATCCGGCCAGCTTCAATGCTGCACCCTCCTTTACTAACACACTGCAACCTTTCATCCCCAAAACCTCTTCAAGCAGCAACTTCGTTGGTGAATCCCCATTTTCATCTCACATTCAGCCACAAATTTATGGTGAGGGCCACAGTACAGGGAAGAAGCCTATCACTGTGGAGTTTGGTGTGTCTAGTAAAGGTTCTAACAGCAAACAATCACAAAGTAAAGACACTAAAGAGAAAAAAGCCCCTTCCAAACCACGTGTCTACAGATGCAAGGAATGCTCTTCAGTGTTCAATACTCTTAAATTACGTCGTTTGCATCCTTGTGAACAGATGAAGAGCACACCTCTTCCTGCTGTGCATATGACATCAGAAATTAAAGGGCTGACTGAAGAGACTAATGCTCCAAGCTCCTCCTCCAAGGAGGGAGACAATTGTGTATCCAAACCTAAGAAAAGAAATCCTCGGAAACCAAAGTCAACTATCAAAAAAGAAGTTATTGTTGAAGATGAAACATCAGATCAAACTGGTTTTGCTAATCAGTATCGAATAAGTAAAACTGAACCTGTTGATGCTTCTGAATCTCAAACAAATCCTCAGGTTGTACCTGAAATTTCCTCCGAGCCTTGCCAGAGTACAGCATTTGAGTCAACTGAAGTTGCTTATGTGGAAGTGCCCTTAGTTAAGAGCGAGGCCGTGTCAGCCGCGTTAGGGTCATTTGGCTGTCAGAAATGTGACCAGGATTTCAAAACTGCTAAACAATTATCCCAACATATGTCTAGCAAACACAAAGATCAGAAGTATCAGTGCACAACTTGTGGTGAAACATTTGACAAGGAGCGTAATTATTATGATCACCTAATGGTTCACCCAGCTGAATGCCAGCTCTGCGGTAAAACTTTTGTGAGacGTAAATATTTGGCTCTTCACATGAGGTGGCACATGGATGAAAAACCCCACAAGTGTGTTTCATGTAATAAATCATTTGTTACAAAACAGAAACTAGATGAACATATGAATACACATACTGGAAATGCCCCTATCAAATGTGTTGACTGTGATATGACTTTCAAACGATATTCAAATATGATTCAACATCGAAACCGGCATCATTTAAATCTGAAACCTAAAACTAAAGATTATATTTGTCACTGTGGGGAGGTTCttcattcaaagaaaaaattggAATGGCACAAAGAGATTCACGAAATGAAGCCGAAATCTTGTCACTATTGTGCTGAGAAATTTGTCCATACGGCAAGTTTGACTCGCCATGTCCGAAGAGCACATGATAGTCGTTATGTTCCTagcaaaaaaagagaaggagaaaacaTTGAATGCCCTATCTGTCACCTGGTGTTTTTGAAAACTTCCCTTGCAGGCCACATCAAGATTCATGGTGGTGAACGTCCGTTTCCTTGTCACATTTGTGGAAAGGATTTCACCACTAAATGGAACCTACAGACTCATCGATGGACCCATGCTAGCCGTTCTGCAAGGCAGCATAAGTGCACACTTTGCAAAGCCTCATTTTGCAGAAGACCTGACTATCTCACTCATATGAATTCTCATCGCAATGTAAGACCTTTCACTTGCAACCACTGTGGTTGTCAGTTTGTACGTAAGTATAACTGCTTGCGTCATATGAGGCAACACGAAGAAGGCAAAAATTACACCTGTACCATATGTAACAAAACGTTTCATCGTAATTATTACCTTAAGGACCATATGCGCATACACAATGGAACTCGTCCATTTACTTGTCATATTTGTGGCAAAGCTAGTACTTCTAAATCAAATCACAATAAACATGTCCGAATACACCATGCCCGAGAACCTCACAATACAGAAATCTAA
- Protein Sequence
- MGSGNVCCPVCRQFLPKAKSLHEHLNTHPKLQVIEALIQLKDACKDFEPSSSVQQKDYSPLESPEGDDERVENAVDITTHSCTPPAPPHDSDEEGIHETRNNTEGAIDLHVDSENEEKLPPTSVKYALQQCAPSSSTSNLSPYPQFLTGSSPVAQFIHVPVVTSAVPNSAPPPSTQQAPVVLYSPFVCPPSTSVASSSYSSPLNLAQHLQFLVGNSVVRSPFSIIQAHPSTEPSQTGHVALKSEVSSRNNSLTVSSNINPKPASTAAESLSEDWVAPGDSSTSLVCSESPVTDSEENSLHENLREDEEKVSDQLESAPETASYVSEVLKAQVSTVKHCNEPHVLMSDLPESETLSTGPEFTSSLEHRTPQEQDLLTPPKKRICFSLGSPSRHSPTDQFQEVSPSRIAQGSPRALSNWNNLGSPGAHSTSSVEGVLRVRSDLNVSLGHSVSIPCEEKDENWAQTNLKKEAHQSNAAVKDLSAACDIDHMPNDLRSNAEKNITFGNVILTCLKKSSGNNTNNIQGKNEFEFIIPDVVTESYSDFQDDRSLSRAGSPPCDSAPPSPYQKSLDSPSTPLNIQTDETMPPRGELSEQESIGGNSSSMWSVPAYHITRQLPSPVVSYDLTARESWAGSDVSDSEGNANVGDNHPASFNAAPSFTNTLQPFIPKTSSSSNFVGESPFSSHIQPQIYGEGHSTGKKPITVEFGVSSKGSNSKQSQSKDTKEKKAPSKPRVYRCKECSSVFNTLKLRRLHPCEQMKSTPLPAVHMTSEIKGLTEETNAPSSSSKEGDNCVSKPKKRNPRKPKSTIKKEVIVEDETSDQTGFANQYRISKTEPVDASESQTNPQVVPEISSEPCQSTAFESTEVAYVEVPLVKSEAVSAALGSFGCQKCDQDFKTAKQLSQHMSSKHKDQKYQCTTCGETFDKERNYYDHLMVHPAECQLCGKTFVRRKYLALHMRWHMDEKPHKCVSCNKSFVTKQKLDEHMNTHTGNAPIKCVDCDMTFKRYSNMIQHRNRHHLNLKPKTKDYICHCGEVLHSKKKLEWHKEIHEMKPKSCHYCAEKFVHTASLTRHVRRAHDSRYVPSKKREGENIECPICHLVFLKTSLAGHIKIHGGERPFPCHICGKDFTTKWNLQTHRWTHASRSARQHKCTLCKASFCRRPDYLTHMNSHRNVRPFTCNHCGCQFVRKYNCLRHMRQHEEGKNYTCTICNKTFHRNYYLKDHMRIHNGTRPFTCHICGKASTSKSNHNKHVRIHHAREPHNTEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -