Focc001291.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
-
Assembly
None
Location
ML762992.1:1253624-1259971[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00088 0.048 14.0 0.8 2 23 348 370 347 370 0.92
2 10 0.00068 0.037 14.4 0.6 1 23 376 398 376 398 0.98
3 10 0.00015 0.0083 16.4 4.5 2 23 406 427 405 427 0.95
4 10 0.0006 0.032 14.6 3.2 1 21 433 453 433 455 0.93
5 10 7e-07 3.8e-05 23.8 0.5 1 23 464 486 464 486 0.98
6 10 1.6e-07 8.7e-06 25.8 0.2 1 23 492 514 492 514 0.99
7 10 4.7e-05 0.0025 18.0 1.2 1 23 520 542 520 542 0.96
8 10 6.7e-05 0.0037 17.5 3.2 1 23 548 570 548 570 0.98
9 10 3e-05 0.0016 18.7 2.8 1 23 576 598 576 598 0.98
10 10 0.00022 0.012 15.9 5.4 1 23 604 627 604 627 0.98

Sequence Information

Coding Sequence
ATGGATAGTACGGAGCTTTGTCGTTTGTGTGCAACTGAAAAGGACACTTTTGTCGATGGATTTGTTAGGATTTACAGTGACGAAGGTCAGAAGTTTGGTTTAGAGAAGAAAATTATACGTTGCCTTCAAATCGAGCTATGTTCAGGTGACGCCTTGCCGAAATCTGTTTGTCTTGAGTGCTGTAGCAAGTTGCATCAATGTGCTGATTTCGTTGAGAGCAGTGCAAGAGCTCAAAATCGTCTCAAACTATTGGTAGAGCACACTGCCAAGCTCAATGAATCATCTGCAGTtaaggaagaagagaaaaatgttAAAGATATCAAAACCGATGTTCCTGACAAAAGTAAAGTGCTGACCGATGTAAGAGATGATTCAAAACTCGAACAGGAGAAGCCATCAGAGCaggaggaacagcagcagcaacaacagcaacagACTGCCGAACAAAAAGACATCCATCCATCTAAGTTTCTAGAATGTGTTGTTAGGGAAGACAACTCAAAGTCTGAACCATCTCCCAAAGAACAAGATATTGTACCTGAAGCTCCACGCTCCCGTGCTTCTAAAAGGAAATGCAGACTACCCGTTAGAGTAAGCAGAGTTTGTTTGGAAGATGATGTCGACCTAGAAAATGTGGATCTTGATGCAGCTGAAATTTCAAGAATATTTGCTGATGATGATTCAGATGATGAGACGAGACGAAAACGAAAAAGTAGAAAGAAACGCTCATCCGTCAAAGCTAAAGCAAAAGCAAAACCCAAGCCGAAATCTAAAAAGTGTTCTGAAAAATATGCCAAAACTGATTTGCCTAGTGATATAAATGTGTCTGATAAAAATGGAAAGGATGACCAATTGCACACTAGTGATAATGGATCAAAAAATTCAGATAGTGACTATGTTGATGATACTGGATTTGGTgaccatgatgatgatgatgacgacgatgaaaTTGATGTCTCCAGTAATGAGAAACCTAAGTTTAAAGGAAAGTCCAAACATAAGAAAAAAGAGATAGATGTTGACCTTGGTGATTATTTGTGGACGTGTTCTGATTGCTCACAGGAATTCAGTAGTATTGATGAATTACGTAAACATCATTCTGAAATTCACAAGCAAGTTCCTAGATATATGTGTAATGTCTGCTCTAAAGTTGTTGCACAGTATTCAGGGTTTCTATCTCATTACCGTCGCCATCTGGAGAATGATCGTTATTGtACGTGTGAAATATGTGGAAAATGTTTCTCCAGTAAGAAAGGACTGGATTCTCATCGCACAATTCATTCTGACAAGAAGCCCCATGTATGCTCTGTTTGTAATAAAGCATTTAGGCAGCAGAGTGCTTTATATGTTCATTCTCGCTGCCATTTGCCTGATGAACTTAAAAATAAGTATGCTTGTGATGAGTGTGACAAAAGATTTTCAACTAAACCGAACCTGGTTACTCACAAACGTATTCACACTGGTATTCGTAATTATACTTGTGACCAATGTGGGAAATCATTTGTACAGAAAGGAAATCTGGATGCTCATCTTCTCACTCATAGTACTGTAAAACCTTTCTCGTGCCAATTGTGTGACAAGAGttttaaGACTGAATTACAACTTAGAAAGCATGGAAGTATTCACACCGGTGTGAAACCTCATCAGTGTGATGTTTGTGGACGACAGTTTAGAGAAAGAGGAACTCTAAGAGAACATCATCGTATTCATACTGGTGCTATGCCTTTTACATGCGAATTTTGTGGAAAAACTTTCAGATTCAAAGGCGTTTTGACGACTCATAGACGTCAACATACTGGAGAGAGACCCTATTCATGTGTGGAATGTCAACATCACTTCACAAATTGGCCTAACTACAATAAACACATGAAAAGAAGACATGGAGTTAATACAAGTCGACAGAACAGACCAACTATTGTGGAACAAGAACAGCCATCAACTGAAATTGTCTCCAATTCTATGTCTGTTCAGTCATCTTGCCTATCTCCAGATTCTCTTGAACATCCACCACCTCAACCTGAGATTCCTCTCACACCAAGTTCTGAGCCCCAAATGCAACATCAACCAACAGCTTTGATTCATAAAGCTGCCACTGTTGATCATCAGCCACACCATATCTACCTTCATGAAAATACCATGAGTCAGCATTCTCTCCACTCTCAAGAGGATGACTCAATGTCATCTCATCATGAGATATATTCAGCTCCACCTGTCCATTCACCTCATTCCACTCACCATCCGCTAAGCCATGCTATACATTTGGGACACCCAAGTGTACCAGTTCATGCGCATATTGGTCTTGATGATGACAGGGAATCTAAATATGCTACTGAGAGAGAGATCCTTCTTGGTCAAATGTCACGGGAACGAGAAAGGACACATTTTTATAACCCAGCTCCAGGATCATCCGTGAACACTAACCCTTATCTGCATCAGTCCTTGCATCAGTCTTTACATCATTCCCTTCAACAAACACAAATACCAATACCAGGGTTGTATGGGATTCCTCAGCTTTCTTTGGATCCATCTCATTTAGAGATTCTTCACTCGTCTGCATCTCAACACCGGTGA
Protein Sequence
MDSTELCRLCATEKDTFVDGFVRIYSDEGQKFGLEKKIIRCLQIELCSGDALPKSVCLECCSKLHQCADFVESSARAQNRLKLLVEHTAKLNESSAVKEEEKNVKDIKTDVPDKSKVLTDVRDDSKLEQEKPSEQEEQQQQQQQQTAEQKDIHPSKFLECVVREDNSKSEPSPKEQDIVPEAPRSRASKRKCRLPVRVSRVCLEDDVDLENVDLDAAEISRIFADDDSDDETRRKRKSRKKRSSVKAKAKAKPKPKSKKCSEKYAKTDLPSDINVSDKNGKDDQLHTSDNGSKNSDSDYVDDTGFGDHDDDDDDDEIDVSSNEKPKFKGKSKHKKKEIDVDLGDYLWTCSDCSQEFSSIDELRKHHSEIHKQVPRYMCNVCSKVVAQYSGFLSHYRRHLENDRYCTCEICGKCFSSKKGLDSHRTIHSDKKPHVCSVCNKAFRQQSALYVHSRCHLPDELKNKYACDECDKRFSTKPNLVTHKRIHTGIRNYTCDQCGKSFVQKGNLDAHLLTHSTVKPFSCQLCDKSFKTELQLRKHGSIHTGVKPHQCDVCGRQFRERGTLREHHRIHTGAMPFTCEFCGKTFRFKGVLTTHRRQHTGERPYSCVECQHHFTNWPNYNKHMKRRHGVNTSRQNRPTIVEQEQPSTEIVSNSMSVQSSCLSPDSLEHPPPQPEIPLTPSSEPQMQHQPTALIHKAATVDHQPHHIYLHENTMSQHSLHSQEDDSMSSHHEIYSAPPVHSPHSTHHPLSHAIHLGHPSVPVHAHIGLDDDRESKYATEREILLGQMSRERERTHFYNPAPGSSVNTNPYLHQSLHQSLHHSLQQTQIPIPGLYGIPQLSLDPSHLEILHSSASQHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00732077;
90% Identity
-
80% Identity
-