Focc014900.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763128.1:160674-166882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.4e-06 7.8e-05 22.8 0.9 1 23 262 285 262 285 0.93 2 20 0.0065 0.35 11.3 2.0 1 19 292 310 292 313 0.94 3 20 1.3 69 4.1 0.2 2 23 350 372 349 372 0.94 4 20 3.5 1.9e+02 2.7 0.3 1 20 402 421 402 423 0.86 5 20 1.3 71 4.0 0.0 5 23 444 462 440 462 0.89 6 20 6.5 3.5e+02 1.9 0.0 2 23 470 491 469 491 0.94 7 20 0.0091 0.5 10.8 1.4 1 23 496 518 496 518 0.98 8 20 3.8e-05 0.0021 18.3 0.7 1 23 524 547 524 547 0.97 9 20 0.077 4.2 7.9 0.2 1 20 552 571 552 575 0.90 10 20 0.087 4.7 7.8 0.4 3 23 580 603 578 603 0.87 11 20 0.0011 0.06 13.7 0.2 2 23 636 658 635 658 0.94 12 20 4.7e-06 0.00026 21.2 0.2 2 23 666 687 665 687 0.97 13 20 5.1e-05 0.0028 17.9 0.2 1 23 693 716 693 716 0.94 14 20 2.1e-06 0.00012 22.3 0.7 1 23 722 745 722 745 0.97 15 20 0.15 8 7.0 2.1 3 23 754 775 752 775 0.94 16 20 0.021 1.1 9.7 2.5 1 23 781 804 781 804 0.91 17 20 0.0028 0.15 12.4 2.5 3 23 812 832 810 833 0.95 18 20 0.021 1.2 9.7 3.4 1 23 838 860 838 860 0.96 19 20 0.00015 0.0079 16.5 3.2 1 22 866 887 866 887 0.96 20 20 0.0001 0.0055 17.0 3.5 1 23 894 917 894 917 0.97
Sequence Information
- Coding Sequence
- ATGGTTTTAGTGTCTTATATTGATATTTTGGATTACATACACGATGACAGGCAATGTCTCATCGAGGGGGAGAACCTGTTCAATGGaaataaagttaaaaatgtcaaaatatccTGCAGAGCAATCGACGATGTATTTGAAGTTAGTGCTTTATGTGTCTGCAGCAATGAATCAAACTTAAAAGACTCCTTTATATCTATAGAAATTAATCAAGGTGACCAAAAAAGTATATCCTCAAAATGTACTTGTGAATCTGACAGACTCAGCAAGTGCCAGCATGTTGCAGCCGCCCTAATTCATTTACACAGgcaccctcctcctcagcctccaaATGTCCCTAATAAAGAATCACCTGGACAACTATCACCCGAAAATCATTTGAATGGAGGTATCGCAAAACAACCTGGTAAAGATACAGAGCACAATTTTCAGCGCAGACTGAGGAAGAAATGCAGAGCAACTTCTATCGCTAACTCTATAAAAGATGACTCGAGAACTGTGAACACCAAACACCTGCATATTGATAATGAATCAAGTGTTGATGATCCAACATGGGACAAAGaaaatgatgaagatgatgcaTTTGACTGGGCACAGTCGTCTGAAGATGAATGGGAACCTGCTCCTGAAAAGAAGCgtgttaaaaaagaaatgaagttGCTTCCGGACAAGGGCTCGAAAGAAAAGACCAAaaaAACAAGGAATCGAATGACTAAATCAGAAGCAGAAAAGAAGGCCAAAGAACTCTTATCTACACTGCAGCTAACAGGAGAAGATGGACAGTTCTTATGCCATATTTGTGACAAGACATTCCCTAAACAAAGTGAACTTCAAGACCATATAAGAGATATTCATCTATTAAAGAAGGAAGTTTTTTCTTGTTGTAAGTGTGATAAAACATTCAGATTACTAAGAACTCTTAAAGCACATGAAGGAACTTGTGATGTGAATTCTGAAGAGGATGGAGACCTATTTCCTTCCGAGGAAACTCAGGAAATAGAAATAGTCGAAAATGACCTGGAATTCGATGAAAAGATGGACCCCCTCCAATGTTTGCTCTGCGATGTGGTATCGGCGACTCGCCGTGAAATGCATGATCATTATCTGGTTGCCCATCGTGCAGAAGAGGACAATGTTTCAGTTTGTGACCGTTGTGGTGAATTTCGCCTCGCCAGGGACCACATCTGCCCCTCTCAGTTGTCGTTCCGCTGCCACATGTGCCGCGGCCCGTTCAAGGCCGGGCGTGACTACTGGAACCATTTGATTCGCGCCTCCAAGAAGCACACGTCCTCGTGCTCGCCGTCCCCGCGCTGGTGgtgcggctgggcgcgctgcgccgagcgcttCCCCTCcgaggccgagctgctggcgcacGCGCGGCTGCacctccccgcgcgcgtgcagctCATGTGCGGCGTGTGCCTGCTCGTGCTGCGCACCACGGACGCCAAGGTCGCGCACATGGAGAGGCACGACGCGGGCGTCTACGAGTGCGGGGTCTGCCGGCACGCCTGCGACGACAAGGAGTCCCTCCGGCTGCACTGGGAGACGCACGCCGGGGAGCGGCCGCACCGGTGCGACTTCTGCGGCTGGCGCTTCGTCACCGCCACGGCGCTCGAGGTGCACGTGCGCAAGTTCCACGAGGGCGGCCCCTTCTCCTGCGCCAAGTGCCCGCAGAAGTTCGACGACCGGACCGACGTGCGGATCCACTTCGGTGCGGCGCACGGCAAGATGCGCTGCGCGCGTCCGGGCTGTTCGTACCGCTGCGCCAACAAGGCGTCGCTGGAGCGCCACGTGGTGCGCGCGCACCAgcccgacggcgagggcggcgacggcgacgacccggAGGATtctgcgccgccctcgccgccgccgccgcgcgccggggccggccccgccaccatcACCTGCCCCACCTGCAGTGAGGTCTTCTCGCTGAAGCGCGAGTTCCGCGCGCACGTGCGGGACGCGCACGATGGCGTATTCCCGGCCGTCACCTGCCCGGACTGCGGCAAGCCGTTCAAGTCCTCGCGCGACCTGGACGAGCACCGCCGCctgcacacgggcgagaagcccttcATCTGCGCCGAGTGCGGCATGACCTTCAAGCGGGCGCAGAACCTCGAGTACCACACCAAGGGCGCGCACAAGAACGAGCGCAACTTTGTGTGCCCGGAGTGCAACAAGCGCTTCATCTCCAACGCCGACATGAAGCGCCACCTGCGCTACAACCACCAGGACGGCAAGAAGTGGCACCTGTGCCCCGAGTGCGGCCACAAGCTGCCCAGCCTGTACCGGCTCAAGATGCACGTGCAGTCCAAGCACACGGGCGAACGGCCGCACAAGTGCCACCTCTGCGACATGGGGTTCGTGGCCGTCTCGGACCTCAAGAAGCACGTCACGTTCAAGCACAACAAGGAGCACCCGTTCGGGTGCGACGACTGCGACAAGCGCtaccagcggcggcgcgacctgGACGTGCaccggcagcgccaccacggcggcggccagcactcGTGCGCCACCTGCGGCAAGGACTTCGACACGCACGCGTCCATGATGCAGCACTCGCGCTACCACACCACCGAGGAGGCCTTCCAGTGCGCCAAGTGCGGCCGGCGCTTCCCGCACCGCATGAACCTGAGCCGGCACCTGTGCACGCCGGACATCAAGAAGAACTACCACTGCCGCTCGTGCGGCCTCAGCTtcaccaccagcggcagcctcaagtcgcaccggcggcgcctgcacgccgccgaggagccgccggccccggcccggcctgccaccAAGAAGGGCGAGAAGCGCCAGGAGGCGGTCCCGccgtcaacgccgccgccgctggagcaggtgatgctgccgccgccaccgccggcgtcACCGACGCAACAGCACTACTTGCAGCCAGAACAACCGACCACCGTCGTGATGCAGCTCGTGCAGCTCCAACCCCaacaccaccaggaccaccagcaaCACCAGGCGCTGCAGGACAAGCGACAGCTCGAGACTATCGCTCTGCAGCCCCAAGGACATCACTACCAGCACCAGCTTGAGCCGCAGCAACACCAGCTCCACGAGCCTATAGAACACCGCCAGGTCGTCGAGCCACagccgtcagcagcgcgccagcaccATCAACTGCACCACCACGAGGAGCACGCGGATCAGAACGCCGCCGGACAGGACTACTACACGAAGGCGGACAAGATCTGGGGTTGGGGAACAGGACCCACTGCTGCCACGGTGCCTACCCTGGTAGGCCAAGAGACCATGCTGACGCTCACAGGGTGCGCGACCTACCATGACCTGGAGGGCGCGACCCCTCAACCTCAAACCGGCCCCACCATGCatctgctccccgcccccgcggccccccagcTGCACCAGGCCGTGCTGAGGtaccccgccccgtcgccacCGGCCACCACCCTGGTGGTCAagtcagcgccgcccccgctcgtaTCGCTCCACTTGAAGGCCGACACGCACCACCCCCACATGGTGTATGCGTcgcctggcgcccccgcccccacggtAAAGCTGGTGTCTGtgagccagccgccgccgctaacCAGCAtatcctcgtcggcgtcctcgtccaaCCTGGGCCCCGGCGGTCTCATCCTGGGCGCGCCCATCCAGACCACGGCCGACGGCTCGTTCCACCTGGTGTTTGTACCGCACGGGGCCTCTGCGCCAGCCGCACAGGGTAGCAGCAAGTAG
- Protein Sequence
- MVLVSYIDILDYIHDDRQCLIEGENLFNGNKVKNVKISCRAIDDVFEVSALCVCSNESNLKDSFISIEINQGDQKSISSKCTCESDRLSKCQHVAAALIHLHRHPPPQPPNVPNKESPGQLSPENHLNGGIAKQPGKDTEHNFQRRLRKKCRATSIANSIKDDSRTVNTKHLHIDNESSVDDPTWDKENDEDDAFDWAQSSEDEWEPAPEKKRVKKEMKLLPDKGSKEKTKKTRNRMTKSEAEKKAKELLSTLQLTGEDGQFLCHICDKTFPKQSELQDHIRDIHLLKKEVFSCCKCDKTFRLLRTLKAHEGTCDVNSEEDGDLFPSEETQEIEIVENDLEFDEKMDPLQCLLCDVVSATRREMHDHYLVAHRAEEDNVSVCDRCGEFRLARDHICPSQLSFRCHMCRGPFKAGRDYWNHLIRASKKHTSSCSPSPRWWCGWARCAERFPSEAELLAHARLHLPARVQLMCGVCLLVLRTTDAKVAHMERHDAGVYECGVCRHACDDKESLRLHWETHAGERPHRCDFCGWRFVTATALEVHVRKFHEGGPFSCAKCPQKFDDRTDVRIHFGAAHGKMRCARPGCSYRCANKASLERHVVRAHQPDGEGGDGDDPEDSAPPSPPPPRAGAGPATITCPTCSEVFSLKREFRAHVRDAHDGVFPAVTCPDCGKPFKSSRDLDEHRRLHTGEKPFICAECGMTFKRAQNLEYHTKGAHKNERNFVCPECNKRFISNADMKRHLRYNHQDGKKWHLCPECGHKLPSLYRLKMHVQSKHTGERPHKCHLCDMGFVAVSDLKKHVTFKHNKEHPFGCDDCDKRYQRRRDLDVHRQRHHGGGQHSCATCGKDFDTHASMMQHSRYHTTEEAFQCAKCGRRFPHRMNLSRHLCTPDIKKNYHCRSCGLSFTTSGSLKSHRRRLHAAEEPPAPARPATKKGEKRQEAVPPSTPPPLEQVMLPPPPPASPTQQHYLQPEQPTTVVMQLVQLQPQHHQDHQQHQALQDKRQLETIALQPQGHHYQHQLEPQQHQLHEPIEHRQVVEPQPSAARQHHQLHHHEEHADQNAAGQDYYTKADKIWGWGTGPTAATVPTLVGQETMLTLTGCATYHDLEGATPQPQTGPTMHLLPAPAAPQLHQAVLRYPAPSPPATTLVVKSAPPPLVSLHLKADTHHPHMVYASPGAPAPTVKLVSVSQPPPLTSISSSASSSNLGPGGLILGAPIQTTADGSFHLVFVPHGASAPAAQGSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -