Focc004026.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- PRDM13
- Assembly
- None
- Location
- ML763062.1:971884-976626[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0033 0.18 12.2 0.3 2 23 192 213 191 213 0.92 2 16 0.17 9.2 6.8 1.1 1 23 219 242 219 242 0.90 3 16 0.013 0.73 10.3 0.5 2 23 246 268 245 268 0.91 4 16 0.00038 0.021 15.2 0.1 1 21 288 308 288 309 0.93 5 16 0.0026 0.14 12.6 0.7 1 23 317 339 317 339 0.97 6 16 0.00064 0.034 14.5 0.9 1 23 345 367 345 367 0.96 7 16 2.6e-06 0.00014 22.0 0.5 1 23 373 395 373 395 0.98 8 16 0.31 17 6.0 1.6 1 23 401 425 401 425 0.90 9 16 0.00029 0.016 15.6 2.3 1 23 713 735 713 735 0.98 10 16 0.012 0.66 10.4 0.3 2 23 867 888 866 888 0.95 11 16 0.0021 0.11 12.8 3.2 3 23 904 925 902 925 0.91 12 16 0.085 4.6 7.8 0.3 2 23 936 957 935 957 0.95 13 16 0.036 2 9.0 1.4 2 23 966 988 965 988 0.95 14 16 2.7e-05 0.0015 18.8 1.4 1 23 993 1016 993 1016 0.97 15 16 0.0016 0.089 13.2 0.7 1 20 1025 1044 1025 1046 0.93 16 16 3.3e-05 0.0018 18.5 0.0 1 23 1054 1076 1054 1076 0.97
Sequence Information
- Coding Sequence
- ATGAAACTGCCTCCAGCCACCGATATGAGCATAGCTCCTGTTTCTATTATGGAAGTAGCTCACCACAAAGGTGATTCGTCTGATAATTTTCGGAAAGGCGAGCAGGGTTATGATTATGGCTTAGGCTCCAAGTGGGCTGGTCTGGTGTCTGAAGCCCGCGAGCTGGCCGCTCGGTTCAACAAGGACATGAGCGGCGGCCAGGACATGCTCAATATGAGCCTGGGTGGTGAAGATCAAGATCTggaagatgatgaggatgatgaagatggtgatgatgaagaagaagatgaggagggTAACGAAGGTGTCGACTGCCCACCGAGTATTCCCAAGAGTCTTTCATCCAATATTCCAGCAAGTGCTCCTTCCACAGAATTCAGCAATGATTTTCCTTTTGCTAATGGTGTTGATCATGATAGCAACAATGACAATgatgaagaaaagaataacattTCTGGTGGTGCAAATCCATTTGGACTAGACACAGACCAATGGTCGACAGATGAAAGCAGTGACAGTGACGACGATGTTCAAAATGATATTCCTTTAAAGTATCCCAATAGTGATCCACTTGAATGTAAATTCTGCGGGAAGATGTATACCAAAATCTTTGGATTGCAGCGTCATGAAGCAGCTCACGAGGGCAAAAGTATATTTCAGTGCCGATCATGTGACCGAATTTTTCCATCGAGGGATAGACGAGAAAAGCATAAGTTGGATATGCATTATACTTGGAAGTGTCACCTATGCTCTCAATCTTTCCCCAAGTCTAAGCGCCTTGAAATTCATGTTGGAATTGCACACAATGGTAAATTCTGGGATGGTAAACAACTGTTAGATGAACGCCCAGCTTCCGAAATGTTTGTTTGCAACCAGTGTGGTAAAAGCTTTGCCAACAAAGCAGTAATGAAATACCATATTGAATCAAACTGTGGCTCTGAACCAAAGTTCGTGTGTGCAACATGTGGAAAGAAATGTTTGAGCCAAGATTCTTTGGCTTCTCACATGTCAATacacacaggagaaaaggcATATCTATGCCGTTTTTGTGGTGCAAGTTACCGATCAAAGGGTCAAATGAAAGTTCATGAACGCACTCATACTGGAGAAAAACCCTTTGAATGCAATATTTGTGGTAAAGGCTTTGCTCATACTGCTAGTTTGGTCACTCACATGACAACTCATACTGGAGTAAAACCCTTTCCCTGTGATGTATGCAATGTTCGTTTCTCATGTGTTGGGAACCTGCTGAAGCACAACAAAACTCAGACCCATATTTCCAAAGTGTTTGAAAAGACACCCCTTGACCAAGGCAACTCAGTATATCAGCAGCAGCCACTTCTATCGGCAGGTGACAGGCAGCTCCAGTTTCCTGTCACTGAACCACGCATACAGCGTGATGATGACAATTCACAGGACCATCTCAACTTCCTGGGCTACCTAAATGGACCTGCATTTCCGGGGGTTCACCCAAGTAGCAGTTCCAACCATATGTGGAATCATCAACCTGTTGATGGGgaagagcaacagcagcaacaacaacagcagcaacagcaacaacagcagcagcaacaacaacaaagtcaaCAGCAGCAATCTTCCTCAACTTCTTCATCATACTCTGGGTCTGGGTGCAGCTCCGGAGCTGGTGGGGGATCTGGACAACAGCAGCCCCCTgaaccacctccaccgcctcaTGATCAGCAAAATCATGACTCAGGTCTTGTAGCTGTGAAAACAGAACCAGAAGATGAAGACTCCGAAGAGAGCTCTCTTGCTAATCATACTGATGCTAACACAAGCTCTACTTCCAACCCAAATGCCTCTAAATCCACAATTGATGACAGAAGTTCACCGTCACCTCTTGATGCCAGTAACTTTAATTCTGCTAACAATGACAAGCCTTTCAGGGACAGGTTTgacagtgatgatgatgacaatttCTGGTGGGCTATGGATGAATCTGATAATGATAAAGGGGGTGAGCCCCTACCTGTCAAGGTGGAACTTGAAGAAGGCAGTGGGACTGAATCCTTGAAAGAACCAGAAGTACCAGTTAAAAGGAAACGAGGAAGACCAAAGGGATCCAAGACTGTGAATAGAAGGGTTGATAAAGAGAAGAATGCTAAGGGAAAATTCACCTGTGCAACTTGTGGTAAAGATCTCAAATTTAAATCACACCTTGTCAGACATGCTAAAATGCATcaagaggagaaaaagaggaaacggaggaagaagaagaagaacaagcaGAGGAGTCCATATACTGTTTCTAGCTCAGAAGATGACAATACTGACTGTGATAAAGATTCTTTCTTTGATTGTGTCAGTGAAGACGAAGCAATGCGCTTGGAACAAGTGAAGGAAGAGCCACTTGATGATGAGGATGGCAATGATGAAGATGGCCTGAATGAGTCGCGAGAAGGCAATGTTGCTGATGATGCAAGTGACATACCACAAATTGAAGGAGAAGTGAAAGttaagaagaagagagggaggaagaagaagagtgaGATAGAGGGTGGAGACTGGGGAGAACTTGGACCTGATGGGGAGCTTAGAAAGAAACGTGAAAGAAAGAAACCTAAAGAACCCTGTATTTGTGGTGTATGTGGGAAAGATCtaagGTTTAAATCACGCCTGGCTGCCCATATTGCAAATCATACTGCAGAAGACATGAAAGAGAAACTGACAGAGAAAGATTCATGCTGTCTCCTTTGCAATAGAGAATTTGGAtctcctgaaaatttgaagCGTCACATGGACCACACCCACAGTGACCATGGTGGCAAGAAGTCACTTATGACATGTCGCTTCTGTCCCAAACAATACATTAATGAAATGAGCCTGCTTAATCATGAGGCTAGTCATGGAGCAAGTGATGTTGGAACTGTTCAGTGTGAGGCCTGCCCACGCATGTTCCACAACACCAAAGCCTTGTCCCGGCACAAACTCAAAGAGCATGGGGAAGGAAACTTCAATTGTGAAATCTGCAATAAACTCTTTGGAACAAAAGACTACCTGATGAATCACATGAAATCAAAACACATGCCCAAGGAAAAGACCGATCCTTTCACCTGCCATCGTTGTGGCAAGCAGTTTGAGAGGAAACCAACATTTGTGatCCATGTTGAAAGTCAATGTGGGACACAACCACAATTCCCGTGCTCCATTTGTGGTAAAGGCTTTGCTAGTCGAGGAAGTCTTGGGACTCATCTCCTGATTCACACTGGCCAAAAGTCATTTTTGTGCAGGTTAGTGCACCCATTATTTTAA
- Protein Sequence
- MKLPPATDMSIAPVSIMEVAHHKGDSSDNFRKGEQGYDYGLGSKWAGLVSEARELAARFNKDMSGGQDMLNMSLGGEDQDLEDDEDDEDGDDEEEDEEGNEGVDCPPSIPKSLSSNIPASAPSTEFSNDFPFANGVDHDSNNDNDEEKNNISGGANPFGLDTDQWSTDESSDSDDDVQNDIPLKYPNSDPLECKFCGKMYTKIFGLQRHEAAHEGKSIFQCRSCDRIFPSRDRREKHKLDMHYTWKCHLCSQSFPKSKRLEIHVGIAHNGKFWDGKQLLDERPASEMFVCNQCGKSFANKAVMKYHIESNCGSEPKFVCATCGKKCLSQDSLASHMSIHTGEKAYLCRFCGASYRSKGQMKVHERTHTGEKPFECNICGKGFAHTASLVTHMTTHTGVKPFPCDVCNVRFSCVGNLLKHNKTQTHISKVFEKTPLDQGNSVYQQQPLLSAGDRQLQFPVTEPRIQRDDDNSQDHLNFLGYLNGPAFPGVHPSSSSNHMWNHQPVDGEEQQQQQQQQQQQQQQQQQQQSQQQQSSSTSSSYSGSGCSSGAGGGSGQQQPPEPPPPPHDQQNHDSGLVAVKTEPEDEDSEESSLANHTDANTSSTSNPNASKSTIDDRSSPSPLDASNFNSANNDKPFRDRFDSDDDDNFWWAMDESDNDKGGEPLPVKVELEEGSGTESLKEPEVPVKRKRGRPKGSKTVNRRVDKEKNAKGKFTCATCGKDLKFKSHLVRHAKMHQEEKKRKRRKKKKNKQRSPYTVSSSEDDNTDCDKDSFFDCVSEDEAMRLEQVKEEPLDDEDGNDEDGLNESREGNVADDASDIPQIEGEVKVKKKRGRKKKSEIEGGDWGELGPDGELRKKRERKKPKEPCICGVCGKDLRFKSRLAAHIANHTAEDMKEKLTEKDSCCLLCNREFGSPENLKRHMDHTHSDHGGKKSLMTCRFCPKQYINEMSLLNHEASHGASDVGTVQCEACPRMFHNTKALSRHKLKEHGEGNFNCEICNKLFGTKDYLMNHMKSKHMPKEKTDPFTCHRCGKQFERKPTFVIHVESQCGTQPQFPCSICGKGFASRGSLGTHLLIHTGQKSFLCRLVHPLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -