Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: ffmA
Assembly: None
Location: ML763020.1:1376092-1382565[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.27 15 6.2 0.0 1 23 151 174 151 174 0.95

2 11 5.6e-06 0.0003 20.9 1.7 1 23 189 211 189 211 0.95

3 11 0.096 5.2 7.6 0.4 1 23 217 240 217 240 0.92

4 11 3.6e-05 0.002 18.4 0.3 1 23 243 265 243 265 0.98

5 11 0.00021 0.011 16.0 0.3 2 23 274 295 273 295 0.97

6 11 5.3e-06 0.00029 21.0 1.9 3 23 306 326 305 326 0.97

7 11 1.6e-06 8.9e-05 22.6 1.5 1 23 330 353 330 353 0.95

8 11 0.002 0.11 12.9 0.6 1 23 368 390 368 390 0.98

9 11 8.1e-06 0.00044 20.4 0.4 1 23 396 418 396 418 0.97

10 11 3.3e-09 1.8e-07 31.1 0.2 1 23 424 446 424 446 0.99

11 11 0.00013 0.0073 16.6 4.8 1 23 452 474 452 474 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.27	15	6.2	0.0	1	23	151	174	151	174	0.95
2	11	5.6e-06	0.0003	20.9	1.7	1	23	189	211	189	211	0.95
3	11	0.096	5.2	7.6	0.4	1	23	217	240	217	240	0.92
4	11	3.6e-05	0.002	18.4	0.3	1	23	243	265	243	265	0.98
5	11	0.00021	0.011	16.0	0.3	2	23	274	295	273	295	0.97
6	11	5.3e-06	0.00029	21.0	1.9	3	23	306	326	305	326	0.97
7	11	1.6e-06	8.9e-05	22.6	1.5	1	23	330	353	330	353	0.95
8	11	0.002	0.11	12.9	0.6	1	23	368	390	368	390	0.98
9	11	8.1e-06	0.00044	20.4	0.4	1	23	396	418	396	418	0.97
10	11	3.3e-09	1.8e-07	31.1	0.2	1	23	424	446	424	446	0.99
11	11	0.00013	0.0073	16.6	4.8	1	23	452	474	452	474	0.98

Sequence Information

Coding Sequence: ATGGAATCTCCTGTTGAGTACTCATTGAGAGGACCCACTAGGCAGTCAAAGAGAATTGCGCAAGCTAATGCCAAGTCAAAAGTCACTGAAGCAACTTATAGTGGAGAAAATGAATTTTCTGATTCTAAAATCTTGGTCCACGATAATGTGGTAGATTTTGATAGCTCGACTGCTGGAATGTTCCTCAATGTTGATGTTAAGGTTGAGATGGAGCCAGAAGAATTATACGAAGAAGACAGTAATGGTGATGAAAATGATAAATTGGACGATAGCACTTCACAACCGCTGGAGGATTCTTCAAGAGCTAAAGCGATTGTTGCAAAGCTGGCTCAGAAACTCAACTCTAAATTGAATGCTGAATTTACTCCGCGGTCTACTGATTCACTTTTGGCCTGTCTAGAACCAGAGGTTTCTGTTGCCACAGAGGGTACCATCACTTCAGGTAGCGTATATGTGTGTCCGTGGTGTCCCTTAACATCAGCACTTCCAGAAACTATTGAAGAGCACAAAAAAAGATACCACCCTGCACCTTCTGGAGAACCTGAAGTATCTTCTCAGTCTCCTCATATCTGTGAAGTGTGCGGCAAGGAGTTTGCAAGAAGCTGGCACCTCAAGCGTCACTTTATCATACATTCAGGTGAGCGCCCTTTCATTTGTGTAGATTGTGGGGACACATTTGTTACAGCAGGAGACCTATCTTTTCATCATCAAAAAGATCATGCTCCTTTTTCATGCAAATTTTGCCCTGAAGTTTTTGCGGCCAAAGGGTATCTTAAATTACACATGAAAATTCACAAAAGTGCATCTGGTAGACTTTGGAGGTGCTTTGTTTGTGACAAACAGTATGATTCAAAGAGTGTTCTTATTGCTCATCAGAGCACCCATGCTATGCTGAGTTCAATCATGAAAGGCTGCTGTGAACAGTGTGGGAAATCATTCAAATCAGTTGTTGATTTGGAAAATCACATGAAATCTCATACAGTTATACATGCCTGTCCTTTGTGCAATAAATCGTTCAAACAGAGCATTACCTTGACAGAACACATGCGTAATCTACACAAAGTTGAACCTCCTGGGAAACCAGGTAAAATGTCTGCACTCTTTGTGTGTCTTCAATGCCAAAGAGAGTTTGATAATATTCTATCTCTGAAACAACATTTGCAAATGCATTCTTGGGCAAAACCCTGCAAATGCCCTGAGTGCGGGGATAGTTTCCGAGGGGCAAATGATTTGAAGGTACACATGCGTGTTCATACTGGAGAGCGCCCATTTGAATGTCCTGAGTGCGGTGAACGTTTCACTCAAAAAGGAAACTTAAATGTTCATATCAGAACACATACAGGTGAAAAACCTTTTGAATGCCAAATATGCGGGCGTTGCTTTCTAAAGAGTAGTAACTTAAAGGAGCACCATAAAGTGCATCAAGATAAAGGTAAAAGAGAGAACATTAAGGAAGAAAAAGTTGTGCAGGATGTAATGAGTGTACAAGATCTACTGGCCCCAAAAAAACTACCTGAAATGGCTCAAGAATCTAAGTCTTTTCGAGCCTCTATTGCTGGTAAGTTAATGAAAACAGGATTTGCTGCTCTTCCAAAACAGGCATCTGAaagtttcaaacaaaaaattgccaACAAACTGATGAAAACAGGatttgtacctcaaaatactgCATCAAACAACTTTGGAGACACTATTGCTGAACGATTGATGAAAGCAGGAACACTGTCTTTTGATAATGGCAATATATCTCTAAGACTCCTTTAA
Protein Sequence: MESPVEYSLRGPTRQSKRIAQANAKSKVTEATYSGENEFSDSKILVHDNVVDFDSSTAGMFLNVDVKVEMEPEELYEEDSNGDENDKLDDSTSQPLEDSSRAKAIVAKLAQKLNSKLNAEFTPRSTDSLLACLEPEVSVATEGTITSGSVYVCPWCPLTSALPETIEEHKKRYHPAPSGEPEVSSQSPHICEVCGKEFARSWHLKRHFIIHSGERPFICVDCGDTFVTAGDLSFHHQKDHAPFSCKFCPEVFAAKGYLKLHMKIHKSASGRLWRCFVCDKQYDSKSVLIAHQSTHAMLSSIMKGCCEQCGKSFKSVVDLENHMKSHTVIHACPLCNKSFKQSITLTEHMRNLHKVEPPGKPGKMSALFVCLQCQREFDNILSLKQHLQMHSWAKPCKCPECGDSFRGANDLKVHMRVHTGERPFECPECGERFTQKGNLNVHIRTHTGEKPFECQICGRCFLKSSNLKEHHKVHQDKGKRENIKEEKVVQDVMSVQDLLAPKKLPEMAQESKSFRASIAGKLMKTGFAALPKQASESFKQKIANKLMKTGFVPQNTASNNFGDTIAERLMKAGTLSFDNGNISLRLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -