Focc011211.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
-
Assembly
None
Location
ML763246.1:165602-169948[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.011 0.61 10.5 0.3 2 23 286 308 285 308 0.94
2 16 7e-05 0.0038 17.5 1.8 1 23 330 352 330 352 0.96
3 16 0.017 0.91 10.0 3.0 2 21 365 384 365 387 0.93
4 16 0.0012 0.063 13.7 0.2 1 23 395 417 395 417 0.98
5 16 0.00076 0.041 14.2 5.4 1 23 423 445 423 445 0.96
6 16 3.6e-05 0.002 18.4 0.5 1 23 454 476 454 476 0.97
7 16 4.9e-05 0.0027 18.0 1.3 1 23 482 504 482 504 0.97
8 16 8.4e-07 4.5e-05 23.5 2.3 1 23 510 532 510 532 0.99
9 16 0.0006 0.032 14.6 0.5 1 23 538 560 538 560 0.98
10 16 0.00086 0.047 14.1 1.0 1 23 574 596 574 596 0.98
11 16 0.066 3.6 8.1 3.1 1 21 601 621 601 624 0.96
12 16 0.11 6.2 7.4 1.0 1 23 630 652 630 652 0.95
13 16 0.00026 0.014 15.7 3.3 1 23 658 680 658 680 0.99
14 16 2e-05 0.0011 19.2 1.1 3 23 688 708 686 708 0.97
15 16 0.0001 0.0056 17.0 6.0 1 23 714 736 714 736 0.97
16 16 0.00024 0.013 15.8 4.7 1 23 743 765 743 766 0.93

Sequence Information

Coding Sequence
ATGGAGAATTGCCATTCACATCCACCTCCTGTGGGAGTGTGTGTAGTAAATAATGTTTCCAACAATATACAATCATCATCTTTTTCAAATACTGACATTTTTCAAGGAAACCTTCGGAACGTTTCTGTTGAATTTAATCCTCCTTTGTACGGTGGTTCCAAAAATTCCTCTGTGGGAGATGTCAAGACTACACAGTTTTCAGATTTTCCTTCTGAAACTTTAGTACCAAAAGACAATGATATTGTTGCACATTCATGTGAATCAGGGGAACCTCAGATTCTTTACATTACTGCAGAAAATGATGTAAATACATCAGACTTTAACAATTTAGAGACTCAGATGACATCTGTTATTAATGCTGACTCAGCAAATATTCCAGAAGCGTCATTCTTCACCGAGAAAACCTTACAGTGCGAAAAATACCAAGATATGTGCCGTATTTGTGCAAAAGAAACTGACAATTGTATATTGGTGTTCAGCAATGAGGGATTAGCCCTCAGCCTTGTTGATAAAATTCACCATTGCCTTCCAATTAAGATTTCTGAAAATGATGGACTTCCTCAACAAATATGCAATTCTTGTGCTTCAAAACTACAGACTTCTTATGAATTATTTAATATAAGTGTAGCAGGAGATGCCAAACTCAAAGCTATGAGCCTGATGTTGGCCCAGCTGGACATGCCAACAGATAACTGCTGTATTATAAAAGATGGAAGAGCTGAAGATAATGATGCCATTACAAGGATAACTAAAAAGCCAAAGCTGCAGGCATTGGAATCATCATTTCCTACCAATAGTGTAGCTGACGCCCAACAAACAATTATACCAAgtgaagaaactgaaaagagACCATGGAGCTGCTCAGAATGTGATTATAAAGCTTCACGACAAACTTCACTCGCATTGCATGtgcaaaataaacataaaagagaaaatgatgaaattcCAGATAATAAACTAGATGATGCAGTTGCAGAAAAATTGGAATACATTTGTGGATACTGTGATAAATGTTTTGGTTCAGAAGCTAAATTAAAGAAACACACCCTGCTGCATACAAAATTATCAACCGAAAAACAATCAGACCCTCGTTCATGTTCATTATGTAATGAAAAGTTTTCTACGTACAAAAAGCTTCGGGCACATGTAAAATGTGCTCACAATGTAGAGGAAGAGCCTAAGTACAACTGTGATAGATGTGATAAGTCATATCGCCTTGCTGGGAGTCTCGATATACATCGTGCAACACATTCCAACGAAACGCCTTACCTCTGTGATATTTGTGGGAAAAGTTTCAAACATGGTTCTAATTTACGATGTCACAAAAGATCACATGTAGAAGGGAAACTCACTCATCGTTTTAGTTGTGACAAATGTCCTAAAACATTTCCATCTAGATTTCAGCTGAGTGAACATGCTAATGTTCACCTGAATGCAACTCCTTATGCTTGTGGTGTATGTGGAAAGAAATTCCATCGCAGGATTCAACTGCGTCAACATCGAATTATACATAACAGTGAGAGTTCATATGAATGTCCACAGTGTGGCGTGTGTTTTAACCGAAGAGGTAACATGACTCAACATATGAAAAGACATTCAAAAGAGCGGAAATTTGTTTGTAAGGTTTGTAAGGAATCCTTTCAAAGCCTAAGTGAAGTGGTGCAACATAGACGAGAACACACAGAGAAGGAGTCTTTTACACCGTTAGAAAACGGAGAATTCTCATGTTCCAAGTGTGAGAAGTTGTTTTCAAGTGTCAGTGATTTAGATGAGCATACAAAATCACATTCTGATATAAAATTTGAGTGTGAGATTTGCAATAAGCTGCTTTCCAACCGCAGAACACTGGATTACCACATGCGCTGTTTTCATACACAAGAACGTCCATTTTCATGTCAGTACTGTTCTGAGTCATTTGTAGCTCGTGAAGCTTGCACAGTCCATGAAAGAAttcacactggtgagaagccatACTCATGTTCTGAGTGCAAAATGAGTTTCCGGTGTTCCAGTAATCTTGCTCAGCATCTCAATACACACAGTGATAACCGACCCTGGGCATGTGAGCATTGCCCTAAAAGATTTAAGAGGAAAGGTATTTTGTTAGTGCacatgcgaacccacactggggagaaaccATTCTGCTGTGATATATGTGGTCGGAGATTCTCACAAAAGAATGATATGCTTAAGCACCAACATACCCATTCATCTGCAAAGCAAACATTTTTATGTGTGGACTGTAACTGGCCTTTCCATACCCGGAAGGAATTGAACAAACATCGTAGAACTCACCATATACCTACAGAAGTTCAATCAAACGCTAATATTACAAGTGCTCCATCTATAGAATCACAagcgCTTCTCATTAGAGATGATTTAAGCCAGTTTCCTGTGACTATCTTGGAAGAGGGAAGTAATTTAATTGTTCATCAAATTGAAGATTTGGGAAAAGACACTCAAATAGTTGAATTAAATCCAAATGAGCCTAATCCACAAATAATTCACTTTACTGATTCTTTGCTGCAAACTGTTGTACCTCAGTACCAAATTCTCACTGTTCAAGCaccaagtgttcaacaaatGGTTCAGTTTGATGTTGGTCCTTCTGTTTCCACTATTGCTCCCACTCCTACCTCCCAATCAAATTGGTAG
Protein Sequence
MENCHSHPPPVGVCVVNNVSNNIQSSSFSNTDIFQGNLRNVSVEFNPPLYGGSKNSSVGDVKTTQFSDFPSETLVPKDNDIVAHSCESGEPQILYITAENDVNTSDFNNLETQMTSVINADSANIPEASFFTEKTLQCEKYQDMCRICAKETDNCILVFSNEGLALSLVDKIHHCLPIKISENDGLPQQICNSCASKLQTSYELFNISVAGDAKLKAMSLMLAQLDMPTDNCCIIKDGRAEDNDAITRITKKPKLQALESSFPTNSVADAQQTIIPSEETEKRPWSCSECDYKASRQTSLALHVQNKHKRENDEIPDNKLDDAVAEKLEYICGYCDKCFGSEAKLKKHTLLHTKLSTEKQSDPRSCSLCNEKFSTYKKLRAHVKCAHNVEEEPKYNCDRCDKSYRLAGSLDIHRATHSNETPYLCDICGKSFKHGSNLRCHKRSHVEGKLTHRFSCDKCPKTFPSRFQLSEHANVHLNATPYACGVCGKKFHRRIQLRQHRIIHNSESSYECPQCGVCFNRRGNMTQHMKRHSKERKFVCKVCKESFQSLSEVVQHRREHTEKESFTPLENGEFSCSKCEKLFSSVSDLDEHTKSHSDIKFECEICNKLLSNRRTLDYHMRCFHTQERPFSCQYCSESFVAREACTVHERIHTGEKPYSCSECKMSFRCSSNLAQHLNTHSDNRPWACEHCPKRFKRKGILLVHMRTHTGEKPFCCDICGRRFSQKNDMLKHQHTHSSAKQTFLCVDCNWPFHTRKELNKHRRTHHIPTEVQSNANITSAPSIESQALLIRDDLSQFPVTILEEGSNLIVHQIEDLGKDTQIVELNPNEPNPQIIHFTDSLLQTVVPQYQILTVQAPSVQQMVQFDVGPSVSTIAPTPTSQSNW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-