Focc008686.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- ZFX
- Assembly
- None
- Location
- ML763012.1:1866734-1871888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0058 0.32 11.4 0.6 1 22 38 59 38 59 0.97 2 15 8.9e-06 0.00048 20.3 0.5 1 23 67 90 67 90 0.98 3 15 0.00042 0.023 15.0 0.1 2 23 115 136 114 136 0.97 4 15 5.6e-05 0.0031 17.8 0.3 1 23 142 164 142 164 0.99 5 15 0.00019 0.01 16.1 0.3 1 21 170 190 170 191 0.93 6 15 0.00012 0.0067 16.7 1.6 1 23 258 280 258 280 0.99 7 15 5.1e-06 0.00028 21.1 0.4 1 23 286 308 286 308 0.99 8 15 1.7e-05 0.00093 19.4 2.3 1 23 314 336 314 336 0.99 9 15 0.0021 0.12 12.8 0.6 1 23 342 365 342 365 0.94 10 15 0.0014 0.077 13.4 0.7 1 23 402 425 402 425 0.96 11 15 0.0053 0.29 11.6 0.7 1 20 431 450 431 451 0.95 12 15 0.00023 0.013 15.8 0.4 1 23 485 507 485 507 0.98 13 15 0.0002 0.011 16.0 1.0 1 20 513 532 513 533 0.96 14 15 0.003 0.16 12.4 0.4 1 23 580 602 580 602 0.96 15 15 1.8 99 3.6 2.6 1 19 606 624 606 630 0.95
Sequence Information
- Coding Sequence
- ATGCGAGAGGTGTGCATAGGCAATTTAGCCTTCCCTGACAGCCATAGTGGCTATCAATGTGCACTGGATAGAATTGGGAAGTTACCAGTCAAAGTACCTCCCAAGAAAAAGTTCAAGTGCCCACAATGTCCTCGCCGATATCAATGGAAATCTACTATGCTTCGCCATATTCGAACAGAATGTGGCTTTTCTCCTCAGTTTCAGTGTCCTTATTGTCCTCAGCGTACAATAAGAAAAGATAATCTTGTAATGCATATTAATAGAAAACATGGTCCTGGCAAGCTCCCGGATGTTTTCAACTTCATTGGGGCTGGAGCTGTTCAGCGATCAGATTTGGGTACATCATGCCCTGTATGTGGGAAGAAGTTATCATCCAAAGCAGCTGTAGTGGGACATTTGCGAACACATACTGGTGAACGTCCCTTCCAATGTGATGTCTGCTCATCTACATTTGCCTATGCAGGAGATCTCATCCGCCACAAGCGATCTCATACCAAGGAACGTCCTTATCAGTGCCCCTACTGTCCTCaaaaaacattcagaaaagATAATCTTGTAATGCATATAAGTCGAAGAAGGCAAAGTGCTATTATTATAAAGAACATACCATACTATTGGCTTGATGTCCCCGGAAGCAATGTCGAAGTTGTTACAAGTCTCTTAGTGTTCAATTTGGCCGAGAATATGCTCGGCGCAAGACTTCTAGAGTGTACACTTTTTGTCGGCTATGCCCAGGGTCTCCATCTATtgctgctggtgccgccgaCGCTGTTCCAGTGCCCGGTGTGCGCCAAGTACCTGTCGTCCAAGCACTCGCTCAAGgagcacgcgcgcacgcacacgggcgagaagccgtaCCAGTGCGGGACGTGCGGGGCCGCCTTCGCCTACGCCGGCCACCTGCTGCGACACCGGCGCAGCCACACCAACGAGCGGCCCTACAAGTGCAACGTGTGCCCGGCCGCCTTCAACCAGAGCACGCACCTGCACGTGCACACGCGCATCCACACGGGCGACAAGCCCTTCGCGTGCGCCTTCTGCGGCATGAGCTTCACCGAGTCCAGCAAGCGGCGCCGCCACGTCCTCATCCGGCACGGCGTGGACGTGCGCCCGTCCCGAGGATTACCCTTTGAGGATCACGATGGTGCGGGAACCTGGATCTTGTCTCAGACGCAGAAGGGTGGCTTTGTGGCGGCTCCCTGCTATCCGTGCCGCGAGTGTGAGGAGTCGTTCGCCTCAAAGTACATGCGTCGCAAGCACGAGCAGGTGACGCACATGGGCCGCCTGAAGCACGAATGCGAAACCTGCAACCTGTCCTTCCCTGAGCTCTACCTCCTGCGCCGGCACACCTTTCATCCCCTGGAGCTGGTGGACGAGGccctcgccacgcgccgcagACCGTCGCTGCGCCGGGACACGCCACTCCTGGGCACGTGCGACGGCGACCGACGGCACAAGTGTcccacctgccccgccgccttccAAAAGCTCTCCACCCTCAAGGGCCACATGTTGGTGCACACGGGGGAGCGGCCCTACGTCTGTGACTTCTGCGGGATGAGTTTCACGCAGAAGAGCAAACGCAAGAAGCACctcgacgacgacgacgacgatgacgagaGCGGAGATGAGGGGCCTGGGGATGATGCTACCAGGGAAGTAGGCAGGGATGGTGGGcatgaggagaaggagaagaaaggtGGCGCAGAGGAGGGCGAGTCCGACGACCGCGTCTCGTTTAGCTGCGGCTTTTGTCCGATGAAGTTCTACGACCGGTCCGACTGGACTTCGCACGAGATGGGCCACTTCAACAAGTTTCCCTGCAAGACGTGCCTGGCGCTGTTCAGCTCGCCGCTAACCCTCAAGCGACACTGTCAGCAGACCAAGCACGCCATGTAG
- Protein Sequence
- MREVCIGNLAFPDSHSGYQCALDRIGKLPVKVPPKKKFKCPQCPRRYQWKSTMLRHIRTECGFSPQFQCPYCPQRTIRKDNLVMHINRKHGPGKLPDVFNFIGAGAVQRSDLGTSCPVCGKKLSSKAAVVGHLRTHTGERPFQCDVCSSTFAYAGDLIRHKRSHTKERPYQCPYCPQKTFRKDNLVMHISRRRQSAIIIKNIPYYWLDVPGSNVEVVTSLLVFNLAENMLGARLLECTLFVGYAQGLHLLLLVPPTLFQCPVCAKYLSSKHSLKEHARTHTGEKPYQCGTCGAAFAYAGHLLRHRRSHTNERPYKCNVCPAAFNQSTHLHVHTRIHTGDKPFACAFCGMSFTESSKRRRHVLIRHGVDVRPSRGLPFEDHDGAGTWILSQTQKGGFVAAPCYPCRECEESFASKYMRRKHEQVTHMGRLKHECETCNLSFPELYLLRRHTFHPLELVDEALATRRRPSLRRDTPLLGTCDGDRRHKCPTCPAAFQKLSTLKGHMLVHTGERPYVCDFCGMSFTQKSKRKKHLDDDDDDDESGDEGPGDDATREVGRDGGHEEKEKKGGAEEGESDDRVSFSCGFCPMKFYDRSDWTSHEMGHFNKFPCKTCLALFSSPLTLKRHCQQTKHAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -