Focc014949.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
-
Assembly
None
Location
ML762982.1:1299920-1306243[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.4e-05 0.00073 19.7 0.1 1 23 268 290 268 290 0.97
2 12 0.00038 0.021 15.2 0.1 2 23 297 318 296 318 0.96
3 12 0.00017 0.009 16.3 0.2 1 23 324 346 324 346 0.93
4 12 4.3e-08 2.3e-06 27.6 1.8 1 23 352 374 352 374 0.99
5 12 2.2e-05 0.0012 19.1 3.4 1 23 380 402 380 402 0.96
6 12 2.2e-05 0.0012 19.1 1.4 1 23 408 430 408 430 0.98
7 12 1.9e-06 0.0001 22.4 1.1 1 23 582 604 582 604 0.98
8 12 7.1e-05 0.0038 17.5 1.1 1 23 610 632 610 632 0.94
9 12 7.1e-07 3.8e-05 23.8 2.0 1 23 638 660 638 660 0.99
10 12 0.00065 0.035 14.4 1.5 1 19 666 684 666 688 0.94
11 12 0.0028 0.15 12.5 7.2 1 23 694 716 694 716 0.96
12 12 2.5e-06 0.00014 22.0 5.0 1 23 722 744 722 744 0.99

Sequence Information

Coding Sequence
TTGCCTGTTTCAATCAAGATGAACCTACAACAGACGTGTCGCCTATGCTTAGGACAGGGAGGAGTCCTTTCTCCCATTTTCCAGGAGTCCGTTGGGGGTGGCGAGGGCAGCCGAAGcgcgccccagccagcccaaCCCCAGCCAACCCTGCCCCTCAGGATCATGGCCTGTGTGCCCATCCAGGTTCTTGAAGGAGATGCTCTCCCAGCACAGATCTGCCATAGGTGCTTGTATCAAGTGGAGCGTTCTTATGACTTTAAAGAGCAATGTGTAACCTCAGATAAAATTCTTCGTCAGTATGTTGCACAAACTCTTGATCAATCTAAGAAAAGACATGAAGACTTACCCTCTGATGGTGCAGCTTCTGCTGGAAAAAAGTTGCATTCATCAAAAGAAGATAAAGTGGATGGCACATTCCATGGGCTTGTGGATTTGTCTTCGGTGATAGAAGGTGGTCCAACCAAGAAAGCCAAGTTGTCAGAAGCTCACAAGGAGGTAAAATTCAACATTTTGCAGTCTAAACTTTCAGCTATTATTCACCAACGTCCAACTGTCTCACCTGAAGAGGATGTGGATTCTGGTCTTTTGGAATCACTTGCTGATTGTGATGACCTCCAAGTAGTGAAaagtgaaggtgaaggtgagGCACATCAATATGACAAAATGGACGATGACCTTTCTGATAGATCTGATTCGTCTGAAGATGAGATACGTTTGCGTTGCAAAATGTGCAAGGATACATTCCCTTTCATTGATATTTTAGAGTCTCATGAGGCTGCACATGATGCCAATGACTCTCCCTACGCATGCTCTATTTGTGACAAGGTGTTCTCTGAAAGAAGTCTCTTAGATGCTCATTGGCAGGTCCATAGTGGGGAAAATCCTCTGCAGTGTCCTCTATGTGAAACAGTCTTTTCTAGTGAAGACTTAATGGAGAATCACTTGGAGAGTCATGATTCCAGTCTTCCCTTCTCATGTTTAACATGTGACAAAGCGTATGCCACTCGATCAGATCTGATCAAGCACTCAGTCATTCATTCTGGCTTACGACCATTCAAATGTAAAATTTGTCCCAAAGAGTTTGCCAGGAGCACAAATTTCAACAAACACATGAGAGTTCACATTGGTCAGAAATCTTTCTGTTGTAATGAATGTCCCAAAATGTTCAGAACCAAAGGTGACTTGCATCGGCATGAAATCATTCATACTGGTCAAAAGCCATATTCCTGTTCTTTGTGCAACTTATCCTTCAACCGTAAAGATAAACTGGTTCGACATGAAAGGCTTCACTCTTCAGGGAATCCTTTTAACCCCCATGGTATGATGTTTAAAGGTGATGATCAGCCAGTGCAGGAGGAAGCAACTGATCTAAGCATGCCTTCTAAAAAAGATGCATTCAATGATCAGCAGTCTGAGAGCATGGAGTTTAATGATGATGAAAGTACTGTTGACACTGAGCCCGACAACCAGCTGCAAATATGCGAGGACCCTATTGATGAAGGCAATTCTGATAACCAAACTTGTGATGCCCTTAAACACGAAGAAAGTGAAAAACAAGCAGGTGTTGAATCAATGGTTATAAGCCTTGATCCATTTCAAATGGAGCGAATGGATTCTAGCTTGAAAGAATCAGACATACCACCTAACTTTCCTTTGTCTTCCATCAAGTCCGAGTATGAGAAGGAAGAATTTTCTCCCAATGAGAATGACATGGATGGTAATATCCAGGAAAATACCAAGCCCtatgcatgcgagtactgcccAAAGAAATTTGCAGACAAGAGTTACATGAAAACTCACCAACTCACACATTTGGGTATCCGACCTCATGCATGTAGCTACTGTGGTAAAGGATTCTTTCGTAGACGAGAGCTGCTTCGTCATGAAGCTGTGCACACAGGTATCAAGCCTTTTACTTGCAAGACCTGTAATAAAGCTTTTGCTCGATCAGACAAACTTATGCGTCATGAACGTACACATGGTGAACCAAAAAACTTTAATTGCTCTCAGTGCCCTGCTGTATTTTCACGCAAAGATGAGTTGTCTAGGCATGGAATGTGTCATACTGGTGAACGCCCACATTGTTGCTCTCAGTGCTTTAAGTCCTTCTTCTCTCGCGCTGAGCTAACTAGACATGAAAAAACACATGCAGGTTTGAAGCCTTTTAAATGTGACTATTGTGACCAGTCTTTCCACCGTCGCGATAAGTTAAATCGCCATGTTCGTACTCACTTGTCACCGGCTGCACCATCAGCTGATACAAACATCCTAGGCACAGTCCATCTTCATGATTTGTTGGCTGCTCATTGTGGTCAGCACTTTGCTGCTGAAGTTCGTGTGAAAGAAGAGAAGGCTGAAGTAGGTGATGAGCTGAAGGTGAGGGTTGATGGTTCCATTGATGCTAGGGCCCTTGCTCGCCTTAACCAGAACCCTGATATTCATCTTATTCCATTGAAGCAAAACTAA
Protein Sequence
LPVSIKMNLQQTCRLCLGQGGVLSPIFQESVGGGEGSRSAPQPAQPQPTLPLRIMACVPIQVLEGDALPAQICHRCLYQVERSYDFKEQCVTSDKILRQYVAQTLDQSKKRHEDLPSDGAASAGKKLHSSKEDKVDGTFHGLVDLSSVIEGGPTKKAKLSEAHKEVKFNILQSKLSAIIHQRPTVSPEEDVDSGLLESLADCDDLQVVKSEGEGEAHQYDKMDDDLSDRSDSSEDEIRLRCKMCKDTFPFIDILESHEAAHDANDSPYACSICDKVFSERSLLDAHWQVHSGENPLQCPLCETVFSSEDLMENHLESHDSSLPFSCLTCDKAYATRSDLIKHSVIHSGLRPFKCKICPKEFARSTNFNKHMRVHIGQKSFCCNECPKMFRTKGDLHRHEIIHTGQKPYSCSLCNLSFNRKDKLVRHERLHSSGNPFNPHGMMFKGDDQPVQEEATDLSMPSKKDAFNDQQSESMEFNDDESTVDTEPDNQLQICEDPIDEGNSDNQTCDALKHEESEKQAGVESMVISLDPFQMERMDSSLKESDIPPNFPLSSIKSEYEKEEFSPNENDMDGNIQENTKPYACEYCPKKFADKSYMKTHQLTHLGIRPHACSYCGKGFFRRRELLRHEAVHTGIKPFTCKTCNKAFARSDKLMRHERTHGEPKNFNCSQCPAVFSRKDELSRHGMCHTGERPHCCSQCFKSFFSRAELTRHEKTHAGLKPFKCDYCDQSFHRRDKLNRHVRTHLSPAAPSADTNILGTVHLHDLLAAHCGQHFAAEVRVKEEKAEVGDELKVRVDGSIDARALARLNQNPDIHLIPLKQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00732036;
90% Identity
-
80% Identity
-