Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763246.1:136342-142462[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.1 5.4 7.6 1.2 1 23 486 508 486 508 0.96

2 17 0.019 1 9.8 0.4 1 23 557 579 557 579 0.96

3 17 9.6e-05 0.0052 17.1 1.7 1 20 588 607 588 610 0.91

4 17 1.8e-05 0.001 19.3 1.9 1 23 619 641 619 641 0.98

5 17 0.0014 0.074 13.4 0.3 1 23 650 672 650 672 0.99

6 17 7e-06 0.00038 20.6 2.9 1 23 681 703 681 703 0.98

7 17 3.4e-06 0.00018 21.6 2.3 1 23 709 731 709 731 0.97

8 17 9.6e-06 0.00052 20.2 0.9 1 23 740 762 740 762 0.98

9 17 0.059 3.2 8.3 4.6 1 23 768 790 768 790 0.96

10 17 0.00014 0.0074 16.6 0.7 1 23 796 818 796 818 0.97

11 17 1e-05 0.00055 20.1 2.9 2 23 852 874 851 874 0.96

12 17 0.00012 0.0065 16.7 0.1 3 23 887 908 885 908 0.96

13 17 0.006 0.33 11.4 0.9 1 23 914 936 914 936 0.98

14 17 2.9e-06 0.00016 21.8 1.6 1 23 942 964 942 964 0.97

15 17 0.00012 0.0062 16.8 5.6 1 23 970 992 970 992 0.98

16 17 2.8e-05 0.0015 18.7 1.2 1 23 998 1020 998 1020 0.98

17 17 0.019 1 9.8 2.0 5 23 1029 1047 1027 1048 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.1	5.4	7.6	1.2	1	23	486	508	486	508	0.96
2	17	0.019	1	9.8	0.4	1	23	557	579	557	579	0.96
3	17	9.6e-05	0.0052	17.1	1.7	1	20	588	607	588	610	0.91
4	17	1.8e-05	0.001	19.3	1.9	1	23	619	641	619	641	0.98
5	17	0.0014	0.074	13.4	0.3	1	23	650	672	650	672	0.99
6	17	7e-06	0.00038	20.6	2.9	1	23	681	703	681	703	0.98
7	17	3.4e-06	0.00018	21.6	2.3	1	23	709	731	709	731	0.97
8	17	9.6e-06	0.00052	20.2	0.9	1	23	740	762	740	762	0.98
9	17	0.059	3.2	8.3	4.6	1	23	768	790	768	790	0.96
10	17	0.00014	0.0074	16.6	0.7	1	23	796	818	796	818	0.97
11	17	1e-05	0.00055	20.1	2.9	2	23	852	874	851	874	0.96
12	17	0.00012	0.0065	16.7	0.1	3	23	887	908	885	908	0.96
13	17	0.006	0.33	11.4	0.9	1	23	914	936	914	936	0.98
14	17	2.9e-06	0.00016	21.8	1.6	1	23	942	964	942	964	0.97
15	17	0.00012	0.0062	16.8	5.6	1	23	970	992	970	992	0.98
16	17	2.8e-05	0.0015	18.7	1.2	1	23	998	1020	998	1020	0.98
17	17	0.019	1	9.8	2.0	5	23	1029	1047	1027	1048	0.94

Sequence Information

Coding Sequence: ATGCAATCATTAGCGTCGAACACATCTCTGTGCCATCAACAAGGGTTGCAGACAAATAGTTGGACTGAATTACTTCAGAATTTTAAGAAGATATGTAGAATATGTGGAGCTCAAAATGATTACCTGATATCTATATTTGGTGCAGAGGGGGAAACACACAGTCTGGATCATAAAATCCATTTATATCTTCAGCTTCAGGTGCGGAGGGAGGATGTCCTACCTTCACAGCTTTGCTATGAATGTATGTCATCATTATTATCATGGCATTTACTTTATCAGAATTGTCAGGAGGCACATCATAGATTTCAAAAAATGTTGGAGAAAGCTGAGTTCCCTATCAGACAGGAGTCTGTTCTTATTTCGCCACCAAAGACATTGGAGCGATTTCAAATTTCATCTCATGATTATTCCAAACTAAGCTTGCCCACAGACACACAGAACGATATTCACCATGGGATTGATGTTACCAGCCAGCAGCATTTTCCTAACACACCACATATAAATGTAAATCAGCTAGTCGAAGATCAGGAAAATAGGCTACTCTCTTATGAAATTAAATCTGATAGGCATTTACAATACCACAACTTACCTGAAGTAGAGACAGTGGATCAGAATGAATTGGATAGGGTATTTGTCTCAGAAATCCCTTCATCCATGCCCATAAATAGCAGGGTGATAACGAACATATCTCATATTGTGTCAAATATTTCAAATGAAATTCAATACCAGGAACATGCTGAACTGTCTCATACAAGCACTCACAACCTAGAGAATGAGTCTGATGATGAGTATGGATGTATCTCTAGCCACAAGAAAGATTCCACTGTAAGTACACTAAGAAAGACCTCTAAACAGAACTCTTTTCTTAAAAAGAAATCAAGCTCTTTAAGTTCAGAAAGTAGAGGAATGCTACCTCAATCTAATGATGCATTAAGAGATGATGTTATGGCTTCACAGTTTACAAATCGTGTGTCAGCAATCCAACTAACCACCAGTAGTGATTCTTATCAACAAGAAAGTACGTGTAGgtCAAAAAGTGTTCTTGTGAGGCATGAGTCAGTTCACCCCTCTGTGCTGGTGTCTGACAATCAAAACGCTTGTCATATAGCTGAAACTGAAGCAAGCACTTTCATTGAGTCTGCCGTCATAAGAGAACACCGTAATATTGGTAGTTTGAATAATGAAGGCAAAGGCACAATGGTGTCTGTTGTTCGGCCAACTTGTTTAAGACGAGCTCCCACAGCTGTTGTTGTGATTGAAAATGTTAGTACTAAGTGTAATAGTGAGTCAAAAGAAATCACTGCTGAGGATGAAGAAGATAAACTCTATAACATGCAAACTTCAAGTAACAATTGTATTCAAGATTCTTCAGAATCCAAAGatGCTTATACAAGTTCTTGTAATGCTACTTCAATAAGATGTACTGAAGGAGAAGCTAAAGGTTTAGACTTATCTCATATTTGTTTCTTATGCAAAAAATTCATTAGTAACCCAGTGTTGTTGCTCTCACATGAAAAATCTCACCTAACTGACTCTAACCCCCCAATTACTTTTATCTGCAAGTTTTGTTCACATCCTCAAAACTCTCTTCATGAGATGCATTTGCATTATACAATACATGAGATAGAAATgggaaaactacaaaaaaattataGCAACAGAAGGGTTTACTTATGTAAGCAGTGTGGACTAGTTTGTGCTACCGAAGAGCGGTTGGCAGGACATCAGCGACTACATGCTGACAGTGTTGAATCATTCAGACATGAATGCAAAACTTGTGGAGAAACCTTTAGCACCCGAAGTAAATTGAGTGTCCACTTGTGGACACATGCACTGAAACCATCTCTTAAGACTTTCAAATGTCATATTTGTGGCAAGGGATTTGGGACTAAATCATCTGTGATGGAACATCGTCTTAAACACACAGAAGAGGAGAAGTCTCGTGCGTTTAAGTGTGTAATTTGCAGTATGGCATTTGGAAACAATACACTTTTAGGGAAACATCGCTTAACTCACACTCAAGAGGAGTTAGCAAGACCTTTCAAATGCACATTTTGTGGCAAGGCATTTGCAAGgaATCACACTCTTCAAATTCATTACCTCTCTCACTCCAATCAAAAAAACCATATATGTAATCAATGTGGAAAAGGATTTAAAATGAGAAACTCTTTAATACAACACATGAGAACACACCAGGATCCAAGTGTGTTGCCTTCATACCCTTGTAGTCTTTGTGGGAAAAACTTCAAGGTCAAATCTCGACTACGAGACCATTTACGTCTACACAgtggagagaaaccatttgtTTGTGCAACATGTGGAAAATGTTTTCACAAGGTGACAGCTTTGCATACCCATGAAATCAGTCATACTGAAAGAAGAGCCTTCATGTGTGATGTTTGTGGAAAAGCATTTAAGTGGAGTAAAAACCTCAGACAGCATAAGTCAGTGCATATCGATCCAAATACAAGCACAGCCCAACCCCAGCCAAGTACTTCCAGTTCTAACAGCTCTGGttgcaaattaaaatcaaaaccaaaacagaaGTTATGTCAATGCGGCCTGTGTGGGAAGGAGTTCTCCAGTAAGGCCAGTTTACGACACCATGTACGAAGTATTCATGATGAGAGGGAAAACAAATCAATGAAAACTACAATATGCTCAATTTGTGGCAAAGAACTTTCCAATACAGCAggACTCATGAGACATATGAAAATAACTCATGGAGGAGAGAAGGCATTTAAATGTGATATTTGTAGCAGAGAATACTCTACCAAAGTTGCAAGAGATGATCATCGACGGTCTCATACTGGCGAGCGACCCTATACATGCAGTATCTGTCCAAAGACATTTTCATCCCTTTCAAATCTCCACATTCACAAAGCCTCACACAGTGAAGACCGTCCACACAAATGCTCATACTGTAACAAGCAGTTTAAAAGACGTGCACATCTTGTACCACATATACGTACGCATACAGGAGAAAAACCATATGTTTGCGATATTTGCTCAAGGGGTTTTGCCCAGAGTAATGACCTACATAAGCACCGGCTAACACATTCAAATGATAAGGCTTTTACATGTTATTGTGGACAGGCCTACCGTATTAAAAGAGACTTGATTCGTCATCAAAATAAACATCACCCTCATAACTTACCACCAGAGGCTCAACCACAAGTTGGTTCAGAATCATTGAACACTGTAGTAGATATATCTCatcagaaacaacaaataattttaacaccTGGACTTCCTTCCGCCTCAGCTTCAAGTTTCAATCCCAATCAAACATCTGATACTAATGTCATATCATCATCAATAATTATCTGTAATTCAATGATGCAAAACAAGAGATAG
Protein Sequence: MQSLASNTSLCHQQGLQTNSWTELLQNFKKICRICGAQNDYLISIFGAEGETHSLDHKIHLYLQLQVRREDVLPSQLCYECMSSLLSWHLLYQNCQEAHHRFQKMLEKAEFPIRQESVLISPPKTLERFQISSHDYSKLSLPTDTQNDIHHGIDVTSQQHFPNTPHINVNQLVEDQENRLLSYEIKSDRHLQYHNLPEVETVDQNELDRVFVSEIPSSMPINSRVITNISHIVSNISNEIQYQEHAELSHTSTHNLENESDDEYGCISSHKKDSTVSTLRKTSKQNSFLKKKSSSLSSESRGMLPQSNDALRDDVMASQFTNRVSAIQLTTSSDSYQQESTCRSKSVLVRHESVHPSVLVSDNQNACHIAETEASTFIESAVIREHRNIGSLNNEGKGTMVSVVRPTCLRRAPTAVVVIENVSTKCNSESKEITAEDEEDKLYNMQTSSNNCIQDSSESKDAYTSSCNATSIRCTEGEAKGLDLSHICFLCKKFISNPVLLLSHEKSHLTDSNPPITFICKFCSHPQNSLHEMHLHYTIHEIEMGKLQKNYSNRRVYLCKQCGLVCATEERLAGHQRLHADSVESFRHECKTCGETFSTRSKLSVHLWTHALKPSLKTFKCHICGKGFGTKSSVMEHRLKHTEEEKSRAFKCVICSMAFGNNTLLGKHRLTHTQEELARPFKCTFCGKAFARNHTLQIHYLSHSNQKNHICNQCGKGFKMRNSLIQHMRTHQDPSVLPSYPCSLCGKNFKVKSRLRDHLRLHSGEKPFVCATCGKCFHKVTALHTHEISHTERRAFMCDVCGKAFKWSKNLRQHKSVHIDPNTSTAQPQPSTSSSNSSGCKLKSKPKQKLCQCGLCGKEFSSKASLRHHVRSIHDERENKSMKTTICSICGKELSNTAGLMRHMKITHGGEKAFKCDICSREYSTKVARDDHRRSHTGERPYTCSICPKTFSSLSNLHIHKASHSEDRPHKCSYCNKQFKRRAHLVPHIRTHTGEKPYVCDICSRGFAQSNDLHKHRLTHSNDKAFTCYCGQAYRIKRDLIRHQNKHHPHNLPPEAQPQVGSESLNTVVDISHQKQQIILTPGLPSASASSFNPNQTSDTNVISSSIIICNSMMQNKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -