Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML762981.1:540043-547150[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.033 1.8 9.1 0.7 2 23 433 454 432 454 0.96

2 20 0.00095 0.052 13.9 2.1 2 23 456 477 455 477 0.97

3 20 0.00073 0.039 14.3 1.0 2 23 484 505 483 505 0.96

4 20 2.9e-06 0.00016 21.8 1.4 1 23 511 533 511 533 0.98

5 20 7.6e-05 0.0041 17.4 1.1 3 23 541 561 539 561 0.95

6 20 0.033 1.8 9.1 0.7 2 23 993 1014 992 1014 0.96

7 20 0.00095 0.052 13.9 2.1 2 23 1016 1037 1015 1037 0.97

8 20 0.00073 0.039 14.3 1.0 2 23 1044 1065 1043 1065 0.96

9 20 2.9e-06 0.00016 21.8 1.4 1 23 1071 1093 1071 1093 0.98

10 20 7.6e-05 0.0041 17.4 1.1 3 23 1101 1121 1099 1121 0.95

11 20 0.39 21 5.7 1.5 1 10 1124 1133 1124 1134 0.93

12 20 0.00018 0.0099 16.2 3.7 1 23 1135 1157 1135 1157 0.99

13 20 9.9e-05 0.0054 17.0 0.7 1 23 1168 1190 1168 1190 0.98

14 20 0.00026 0.014 15.7 3.7 1 23 1201 1223 1201 1223 0.97

15 20 0.0031 0.17 12.3 0.8 2 23 1230 1251 1229 1251 0.91

16 20 0.00011 0.0062 16.8 0.1 1 23 1257 1279 1257 1279 0.97

17 20 0.0015 0.084 13.3 0.5 1 23 1285 1307 1285 1307 0.98

18 20 0.061 3.3 8.2 2.1 1 23 1313 1335 1313 1335 0.98

19 20 0.0053 0.29 11.6 5.0 1 23 1341 1364 1341 1364 0.98

20 20 0.0021 0.11 12.8 0.3 1 23 1378 1401 1378 1401 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.033	1.8	9.1	0.7	2	23	433	454	432	454	0.96
2	20	0.00095	0.052	13.9	2.1	2	23	456	477	455	477	0.97
3	20	0.00073	0.039	14.3	1.0	2	23	484	505	483	505	0.96
4	20	2.9e-06	0.00016	21.8	1.4	1	23	511	533	511	533	0.98
5	20	7.6e-05	0.0041	17.4	1.1	3	23	541	561	539	561	0.95
6	20	0.033	1.8	9.1	0.7	2	23	993	1014	992	1014	0.96
7	20	0.00095	0.052	13.9	2.1	2	23	1016	1037	1015	1037	0.97
8	20	0.00073	0.039	14.3	1.0	2	23	1044	1065	1043	1065	0.96
9	20	2.9e-06	0.00016	21.8	1.4	1	23	1071	1093	1071	1093	0.98
10	20	7.6e-05	0.0041	17.4	1.1	3	23	1101	1121	1099	1121	0.95
11	20	0.39	21	5.7	1.5	1	10	1124	1133	1124	1134	0.93
12	20	0.00018	0.0099	16.2	3.7	1	23	1135	1157	1135	1157	0.99
13	20	9.9e-05	0.0054	17.0	0.7	1	23	1168	1190	1168	1190	0.98
14	20	0.00026	0.014	15.7	3.7	1	23	1201	1223	1201	1223	0.97
15	20	0.0031	0.17	12.3	0.8	2	23	1230	1251	1229	1251	0.91
16	20	0.00011	0.0062	16.8	0.1	1	23	1257	1279	1257	1279	0.97
17	20	0.0015	0.084	13.3	0.5	1	23	1285	1307	1285	1307	0.98
18	20	0.061	3.3	8.2	2.1	1	23	1313	1335	1313	1335	0.98
19	20	0.0053	0.29	11.6	5.0	1	23	1341	1364	1341	1364	0.98
20	20	0.0021	0.11	12.8	0.3	1	23	1378	1401	1378	1401	0.96

Sequence Information

Coding Sequence: CTGTTCCTGTTGATTGTTGAGTCTAATGACAAATCAATCAAAGACATGGAAGTAATCAAAGATGCCAGACAACAAGAGACAGCTGAAGAACAAATGCACCAAGTTCCTATCAATTATAACTATCTTTACAAAACAGACATTTTGAAGAAATCAGCTGAGTTTTGTTCTCTGATAAATAGTGATACTATTGAGGAAATTTGGCATTTACCTCATAATTTGTGTCGCATTTGCGCTCAAAACGATGAAAATGCTATTCAACTTTTTTCTGATGAGAGCAATAGTTGTAAAATATTAGATATGATCAAAGAACACCTATCAATTGCTGTCACACCCAAAGACATCCTGCCTCTCTACATTTGTCATAGGTGTCTTAATAGCTTACAAGCTACGGACAGACTAATCAAAACATGTTCCATGACTGATGAAAATTTTCACTGGATCTTGGACCACATTTGTCGATTATCTTTTCCTGATGAAGCCAATGACAAGTTTGATGTAAACAAGAAAGAAGGGACCTCAAAACATAGTATGTCTTTAACTGATAAGCAATTAAATAAATTTggagacaattttccttgtgcTGCTGGTGAGAAAATCAAGAGCAATTGTGTGACAGTTGTCAAACTTACAAAGGAAAATACTAGCATCTTTCAGGATGTACTAAAGTCAATGAGTGCACATCCTATTTACaaaagaaaggaggagaagggtAGTGAGATAGTTTGTGCAATGCCTGAATCTCCAGCAGCACATTCAACATGCTCAAGTTCTGAAAATAGCATCTTTGAAGAAATTGAGGATACAGAAATCATTCAGCAAAATATTGAAGAGCAGATCAATCAAACCGGAAATCGGAATGACTGTAAATTTTCATCTTCAATTCTTCTCACGATCGGGGCTAAAGAGCCATCTCAAggcggaagaaaaagaaagggaaatacAGTTGAAGAAAATACACAACAAGTTGAAAACCAGATTAAAGGTGAATCTTTACTGCTGACTGGCCCAAAGGAGCCAGCCCAACGTAGGAAATTAAGGAAAAGGCCAATTGAAGAGCAAGTGCAGCAAGTTGAATGTCAAAATGAGGCTGAATCTATAACAGCTCTCATAACTGGCCCAAAAAAGACTACCAAAgtcaaagaaaaaagaaaaaaacagccTAATGCAAAACAAGTAAACCATGCTGAAGATCAGGTTGATGGTGAATCTTCACTTACCGTGACTGATTCAAAGGAACCAACTGAATgtaagataaaaagaaaaagaaagccaagagctaaattaaaaaaaaaattgaaatgtccTGATTGCGACTATTCCACACATGTAAAAGAAGATTTTGCTGAGCACAAAGTAACTCATTTAAAGTGCAGATTCTGTGATAAGTCCTTAAAATCAAAATGGCATCTAATTGAACATGAGAGAATACATACGAGAGAGAAACCAGTCGTATGTGATCACTGCGGATTAGGTTTTCGAACAAAACAGCAAATGATGTCTCATGCTCAGCGTCACAATGCAGAGAAACCCTATGTCTGTCATGAATGTGGAAAAAGATTTTCTGTAAAATCAACTTATGCTGCCCATTTGCTGAGACATAATCCAGACTCTCCCCATCTATGTGACATATGTGGGAAAAGCTTTAAGCTTCAAGATGGTTTAAGAATCCATCGGCTAAATCATCGTACATTTACCTGCACTTCTAATGACAAATCAATCAAAGACATGGAAGTAATCAAAGATGCCAGACAACAAGAGACAGCTGAAGAACAAATGCACCAAGTTCCTATCAATTATAACTATCTTTACAAAACAGACATTTTGAAGAAATCAGCTGAGTTTTGTTCTCTGATAAATAGTGATACTATTGAGGAAATTTGGCATTTACCTCATAATTTGTGTCGCATTTGCGCTCAAAACGATGAAAATGCTATTCAACTTTTTTCTGATGAGAGCAATAGTTGTAAAATATTAGATATGATCAAAGAACACCTATCAATTGCTGTCACACCCAAAGACATCCTGCCTCTCTACATTTGTCATAGGTGTCTTAATAGCTTACAAGCTACGGACAGACTAATCAAAACATGTTCCATGACTGATGAAAATTTTCACTGGATCTTGGACCACATTTGTCGATTATCTTTTCCTGATGAAGCCAATGACAAGTTTGATGTAAACAAGAAAGAAGGGACCTCAAAACATAGTATGTCTTTAACTGATAAGCAATTAAATAAATTTggagacaattttccttgtgcTGCTGGTGAGAAAATCAAGAGCAATTGTGTGACAGTTGTCAAACTTACAAAGGAAAATACTAGCATCTTTCAGGATGTACTAAAGTCAATGAGTGCACATCCTATTTAcaaaagaaaggagaagaagGGTAGTGAGATAGTTTGTGCAATGCCTGAATCTCCAGCAGCACATTCAACATGCTCAAGTTCTGAAAATAGCATCTTTGAAGAAATTGAGGATACAGAAATCATTCAGCAAAATATTGAAGAGCAGATCAATCAAACCGGAAATCGGAATGACTGTAAATTTTCATCTTCAATTCTTCTCACGATCGGGGCTAAAGAGCCATCTCAAggcggaagaaaaagaaagggaaatacAGTTGAAGAAAATACACAACAAGTTGAAAACCAGATTAAAGGTGAATCTTTACTGCTGACTGGCCCAAAGGAGCCAGCCCAACGTAGGAAATTAAGGAAAAGGCCAATTGAAGAGCAAGTGCAGCAAGTTGAATGTCAAAATGAGGCTGAATCTATAACAGCTCTCATAACTGGCCCAAAAAAGACTACCAAAgtcaaagaaaaaagaaaaaaacagccTAATGCAAAACAAGTAAACCATGCTGAAGATCAGGTTGATGGTGAATCTTCACTTACCGTGACTGATTCAAAGGAACCAACTGAATgtaagataaaaagaaaaagaaagccaAGAGCTAAAATAGAAAAAGAATTGAAATGTCCTGATTGCGACTATTCCACACATGTAAAAGAAGATTTTGCTGAGCACAAAGTAACTCATTTAAAGTGCAGATTCTGTGATAAGTCCTTAAAATCAAAATGGCATCTAATTGAACATGAGAGAATACATACGAGAGAGAAACCAGTCGTATGTGATCACTGCGGATTAGGTTTTCGAACAAAACAGCAAATGATGTCTCATGCTCAGCGTCACAATGCAGAGAAACCCTATGTCTGTCATGAATGTGGAAAAAGATTTTCTGTAAAATCAACTTATGCTGCCCATTTGCTGAGACATAATCCAGACTCTCCCCATCTATGTGACATATGTGGGAAAAGCTTTAAGCTTCAAGATGGTTTAAGAATCCATCGGCTAAATCATCGTACATTTACCTGCACTGTGTGTGATAAGACTTTTAATTACCGTTGTGGGGTGTGTCATCGGTCATTCAATAGAATGACTACTCTTCAAGTCCATCGACAGCGGCATGCTGAAGACCTTCTTCTAGGACTGTTGTTTTATAGGTGTGCAATCTGTCATGAAAGTTTTGATACAGGGGGCCAGCTATCTCGTCACATTCAAAATCACAAGGAAGGAGATCAGAATAATTCAAAGGAATATAAGTGTGCACTGTGTAATAAATGCTTCACTAATGAGCAGCAGCTTTCGAACCATACACTCCAGCATAAAGAGACCCAGCCTCTGTCGTGCAGAATATGCAATAAATTCTTTAGCAATCGCACTGAACTTGATAGCCATGCAAGTGATCATTTTGAGGACAAACCCTATGCCTGTAATATCTGCGGTGATCGATTTGAAGACCCTTCAAATTTGAACAGTCATAAATCTGTTCATTTGTCAACCAATTGTTTCACATGTGAAATTTGTGCTAAGTCATTTAAAGCTTTAGATAGACTAAATCAGCATAAAATGGTTCATTCAGAGGTTGGTACCTTTACCTGTCTTGTCTGCTGTGTAAGTTTTAATGAGAGGGACGCACTTAAGAAACATGAACGTTCCCACTTTGTTGAGAGACCATACACCTGCAGTGTTTGCTCTCGATCTTTCAAAGTTAAATCTGACTGTACAACACATTTAAGGCGTTATCATTTGTTAGCTGGAGTGGAGGGAACTGTTCTTGAGTCAGTGTATAGTTGTCTTAAGTGCCCTAAAAAGTTTGCCTTGAGGGTGGATCTCATTAACCACACAGAATCTCTTCACTCTGACCAAGAGACAAACACACTGCTATTATCTGAGGAAAATCCTCAATCATTTGAAAATTCAACTGTTCAGCCCATTTTGTAA
Protein Sequence: LFLLIVESNDKSIKDMEVIKDARQQETAEEQMHQVPINYNYLYKTDILKKSAEFCSLINSDTIEEIWHLPHNLCRICAQNDENAIQLFSDESNSCKILDMIKEHLSIAVTPKDILPLYICHRCLNSLQATDRLIKTCSMTDENFHWILDHICRLSFPDEANDKFDVNKKEGTSKHSMSLTDKQLNKFGDNFPCAAGEKIKSNCVTVVKLTKENTSIFQDVLKSMSAHPIYKRKEEKGSEIVCAMPESPAAHSTCSSSENSIFEEIEDTEIIQQNIEEQINQTGNRNDCKFSSSILLTIGAKEPSQGGRKRKGNTVEENTQQVENQIKGESLLLTGPKEPAQRRKLRKRPIEEQVQQVECQNEAESITALITGPKKTTKVKEKRKKQPNAKQVNHAEDQVDGESSLTVTDSKEPTECKIKRKRKPRAKLKKKLKCPDCDYSTHVKEDFAEHKVTHLKCRFCDKSLKSKWHLIEHERIHTREKPVVCDHCGLGFRTKQQMMSHAQRHNAEKPYVCHECGKRFSVKSTYAAHLLRHNPDSPHLCDICGKSFKLQDGLRIHRLNHRTFTCTSNDKSIKDMEVIKDARQQETAEEQMHQVPINYNYLYKTDILKKSAEFCSLINSDTIEEIWHLPHNLCRICAQNDENAIQLFSDESNSCKILDMIKEHLSIAVTPKDILPLYICHRCLNSLQATDRLIKTCSMTDENFHWILDHICRLSFPDEANDKFDVNKKEGTSKHSMSLTDKQLNKFGDNFPCAAGEKIKSNCVTVVKLTKENTSIFQDVLKSMSAHPIYKRKEKKGSEIVCAMPESPAAHSTCSSSENSIFEEIEDTEIIQQNIEEQINQTGNRNDCKFSSSILLTIGAKEPSQGGRKRKGNTVEENTQQVENQIKGESLLLTGPKEPAQRRKLRKRPIEEQVQQVECQNEAESITALITGPKKTTKVKEKRKKQPNAKQVNHAEDQVDGESSLTVTDSKEPTECKIKRKRKPRAKIEKELKCPDCDYSTHVKEDFAEHKVTHLKCRFCDKSLKSKWHLIEHERIHTREKPVVCDHCGLGFRTKQQMMSHAQRHNAEKPYVCHECGKRFSVKSTYAAHLLRHNPDSPHLCDICGKSFKLQDGLRIHRLNHRTFTCTVCDKTFNYRCGVCHRSFNRMTTLQVHRQRHAEDLLLGLLFYRCAICHESFDTGGQLSRHIQNHKEGDQNNSKEYKCALCNKCFTNEQQLSNHTLQHKETQPLSCRICNKFFSNRTELDSHASDHFEDKPYACNICGDRFEDPSNLNSHKSVHLSTNCFTCEICAKSFKALDRLNQHKMVHSEVGTFTCLVCCVSFNERDALKKHERSHFVERPYTCSVCSRSFKVKSDCTTHLRRYHLLAGVEGTVLESVYSCLKCPKKFALRVDLINHTESLHSDQETNTLLLSEENPQSFENSTVQPIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733676;
90% Identity: iTF_00733676;
80% Identity: iTF_00733676;