Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML762974.1:951229-954065[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00016 0.0085 16.4 0.4 1 23 212 234 212 234 0.97

2 14 0.022 1.2 9.6 1.6 1 23 240 263 240 263 0.89

3 14 1.2e-05 0.00062 20.0 0.7 1 23 271 293 271 293 0.98

4 14 0.021 1.2 9.7 0.1 1 23 299 321 299 321 0.97

5 14 5.4e-05 0.0029 17.8 6.2 1 23 327 349 327 349 0.92

6 14 3.3e-06 0.00018 21.7 2.3 1 23 356 378 356 378 0.98

7 14 7.3e-06 0.00039 20.6 0.4 1 23 384 406 384 406 0.96

8 14 5.1e-05 0.0028 17.9 0.9 1 23 412 435 412 435 0.94

9 14 0.00025 0.014 15.7 0.7 1 23 441 463 441 463 0.98

10 14 2e-06 0.00011 22.3 2.6 1 23 467 489 467 489 0.95

11 14 8e-05 0.0044 17.3 1.7 1 23 495 517 495 517 0.96

12 14 2.6e-07 1.4e-05 25.2 2.0 1 23 523 545 523 545 0.98

13 14 2.7e-05 0.0015 18.8 0.0 1 23 551 573 551 573 0.98

14 14 0.00013 0.0071 16.6 0.1 1 23 579 601 579 601 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00016	0.0085	16.4	0.4	1	23	212	234	212	234	0.97
2	14	0.022	1.2	9.6	1.6	1	23	240	263	240	263	0.89
3	14	1.2e-05	0.00062	20.0	0.7	1	23	271	293	271	293	0.98
4	14	0.021	1.2	9.7	0.1	1	23	299	321	299	321	0.97
5	14	5.4e-05	0.0029	17.8	6.2	1	23	327	349	327	349	0.92
6	14	3.3e-06	0.00018	21.7	2.3	1	23	356	378	356	378	0.98
7	14	7.3e-06	0.00039	20.6	0.4	1	23	384	406	384	406	0.96
8	14	5.1e-05	0.0028	17.9	0.9	1	23	412	435	412	435	0.94
9	14	0.00025	0.014	15.7	0.7	1	23	441	463	441	463	0.98
10	14	2e-06	0.00011	22.3	2.6	1	23	467	489	467	489	0.95
11	14	8e-05	0.0044	17.3	1.7	1	23	495	517	495	517	0.96
12	14	2.6e-07	1.4e-05	25.2	2.0	1	23	523	545	523	545	0.98
13	14	2.7e-05	0.0015	18.8	0.0	1	23	551	573	551	573	0.98
14	14	0.00013	0.0071	16.6	0.1	1	23	579	601	579	601	0.97

Sequence Information

Coding Sequence: ATGGTTGAATTAGAGAAAAGACTTCTGAAAAACATGGATTCGGTGTGTCGGCTCTGCCTGTCAGAGGACAGGAGCACCGTTTCAATATTTGACAGTAGTAACCAGAAACACTCCGTGCCTTTGCCAATTCTGATTATGACTTGCACTCAAATTCAGGTGTATGCTAATGACGGACTGCCAGCTCAAGCCTGTGAAGCTTGCATTGAGAAAGTTGAGTCGTGGTTTGAATTTAAGGGGGTGTGTACTCGATCTGATGAGAAATTACGCCAACTGATAATCAAGAAAGAGGTTCTACCACATTGGGGAGAAGGAGCTATTCTCAGCAGTCCAAAGTCTGACGAAAACCGTCAGAACTCAAACTTTTGCCAGTATGAAAATGGGCAGTCTCAAGAAGTTGAGGTACCGGAAGTTGAGTGTGATGTTGGTTTTGCTTCTGACCGGTATGAGGATTCAGATTCTGAAAGCAGAACAGGACACGAGAAAGAGTCTCGGCGCTTAAACAGAGAAAGTTCAAACAAAACGAGGAAAGTTATGTTAGATCGTAATGAAACCCCAGACCACATACTAGGAATGGATTTCTCTTCACTGGAAAGTGATGAAAGTGGTTCTGAAGGAGATGAAGACTGGGATGAATACAAATGTGATGTCTGTGACAAAGTTTTAAAATCTGATGCCGCTCTTAAAAAGCATAAGTTAAACCATGCCCGAAAACGAAAGTTTCCTTGTACAGTTTGTGGTAaagcttttctttttaaaaatcatcAGGTGCGGCATGAAAGAAATTTGCATGGCAAGAGCATAAATGAGACCTTTTCATGTACTGAGTGTGACAGGAAGTTCACTCAAGACTTTGAGCTGAAAGCTCATGCTCGTATACATGCTAGTGTTATAACATTTGATTGTGAGTTTTGTCAAAAGGTTTTGCTCGACGAGACTAGTCTAGCTGACCACATGCGCATACATCTCAGTGAACGTCCACATGTTTGTGAAACATGTGGTAAATCATTCATTCGAAATTGTCATCTCAAGAAGCACATGTGGACCCATAATGAGGATGATAAACCCCATCGATGTACATATTGTGGAAAATCTTTCTTAACGGCTAGTTCCCTTCAGGATCATGTTCGCACtcacactggggaaaagccaTACCTGTGCACCCACTGCGGGAAATCTTTTTCTCAAGCACCAGCTTTAATCATGCATGAAAAAATTCATGCCACTGGACGTACACATCCTTGTAAATATTGCTCTAAAAGTTTTACCTCGGCAGTTGAAGTATCAGCGCATATGAAGGACAACCATTCTAGAGAAAAGCCTTTCACTTGTGGAACATGTGGTAAAACCTTTGCAATGCAGGTTGTTTATATGAAACACGTCAAAAGACATGAAAGTCTGTTTTTATGTAATGTTTGCGGTAAAACTTTTGCAAGCAAACAGTGCCTTAAGAGGCATGTTCGTATTCATACAGGGGAAAAACCATATCTTTGCCAATATTGTAATACCTACTTTAGAACTTCTGCACATCTTGTTGAGCATGTAAGGATTCATACTGGAGACCGACCTTATGCATGTGAAACTTGTGGAAAGAGTTTTGCTCGGAGAACACATTTGCAACAACATGTGCGCTCTCACACGGGTGAAAAGCCTTATGTTTGCAAGTATTGTGGAAAACCATGGGCTTCATCTAGCAACTTGGCTGAGCATGTGAGGattcacactggtgagaaaccttacatgTGTCAGATTTGTGGCCAAGCTTTTGGGAAGAGGTCTGCTATGCAGGAACATTTGAAGGGACATCCTTCATCAGAATCAGAGGTGGCTACTTCAAGTACACCTTTACAAGATTCATCATCAGCAATTCCTGTAGCATTTCCCAGTTCAAGACAACTTCCCTTACCTGTTCCAAACATGTTGGAACACTTAAAAGAGCATCCTTCAATTGTTGCCAGCTCACGCACTCATCTCCCAGTTACAACACCTACTGGACTTTCACTACCACTTTCTGCTTCAGGACAACTACCATTATCAGTAACAAACATGTTAGCTTAA
Protein Sequence: MVELEKRLLKNMDSVCRLCLSEDRSTVSIFDSSNQKHSVPLPILIMTCTQIQVYANDGLPAQACEACIEKVESWFEFKGVCTRSDEKLRQLIIKKEVLPHWGEGAILSSPKSDENRQNSNFCQYENGQSQEVEVPEVECDVGFASDRYEDSDSESRTGHEKESRRLNRESSNKTRKVMLDRNETPDHILGMDFSSLESDESGSEGDEDWDEYKCDVCDKVLKSDAALKKHKLNHARKRKFPCTVCGKAFLFKNHQVRHERNLHGKSINETFSCTECDRKFTQDFELKAHARIHASVITFDCEFCQKVLLDETSLADHMRIHLSERPHVCETCGKSFIRNCHLKKHMWTHNEDDKPHRCTYCGKSFLTASSLQDHVRTHTGEKPYLCTHCGKSFSQAPALIMHEKIHATGRTHPCKYCSKSFTSAVEVSAHMKDNHSREKPFTCGTCGKTFAMQVVYMKHVKRHESLFLCNVCGKTFASKQCLKRHVRIHTGEKPYLCQYCNTYFRTSAHLVEHVRIHTGDRPYACETCGKSFARRTHLQQHVRSHTGEKPYVCKYCGKPWASSSNLAEHVRIHTGEKPYMCQICGQAFGKRSAMQEHLKGHPSSESEVATSSTPLQDSSSAIPVAFPSSRQLPLPVPNMLEHLKEHPSIVASSRTHLPVTTPTGLSLPLSASGQLPLSVTNMLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732030;
90% Identity: -
80% Identity: -