Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML762991.1:1488321-1490081[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3e-05 0.00073 19.7 1.4 2 23 33 55 32 55 0.95

2 14 0.001 0.055 13.8 0.3 3 23 63 84 61 84 0.97

3 14 1.5e-05 0.00084 19.6 2.0 3 23 94 114 93 114 0.98

4 14 4.6e-05 0.0025 18.1 0.0 2 23 121 142 120 142 0.96

5 14 1e-05 0.00055 20.1 5.5 1 23 148 170 148 170 0.98

6 14 0.00031 0.017 15.5 6.3 1 23 176 198 176 198 0.98

7 14 0.00014 0.0074 16.6 1.6 1 23 206 228 206 228 0.97

8 14 2e-05 0.0011 19.2 0.5 1 23 284 306 284 306 0.97

9 14 3.9e-06 0.00021 21.4 1.5 1 23 312 334 312 334 0.95

10 14 0.00048 0.026 14.9 4.4 1 23 437 459 437 459 0.98

11 14 9.9e-08 5.4e-06 26.5 4.4 1 23 465 487 465 487 0.99

12 14 1.5e-05 0.00084 19.6 1.6 1 23 494 516 494 516 0.99

13 14 1.7e-07 9.2e-06 25.7 1.3 1 23 522 544 522 544 0.98

14 14 0.00035 0.019 15.3 2.8 1 23 561 583 561 583 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3e-05	0.00073	19.7	1.4	2	23	33	55	32	55	0.95
2	14	0.001	0.055	13.8	0.3	3	23	63	84	61	84	0.97
3	14	1.5e-05	0.00084	19.6	2.0	3	23	94	114	93	114	0.98
4	14	4.6e-05	0.0025	18.1	0.0	2	23	121	142	120	142	0.96
5	14	1e-05	0.00055	20.1	5.5	1	23	148	170	148	170	0.98
6	14	0.00031	0.017	15.5	6.3	1	23	176	198	176	198	0.98
7	14	0.00014	0.0074	16.6	1.6	1	23	206	228	206	228	0.97
8	14	2e-05	0.0011	19.2	0.5	1	23	284	306	284	306	0.97
9	14	3.9e-06	0.00021	21.4	1.5	1	23	312	334	312	334	0.95
10	14	0.00048	0.026	14.9	4.4	1	23	437	459	437	459	0.98
11	14	9.9e-08	5.4e-06	26.5	4.4	1	23	465	487	465	487	0.99
12	14	1.5e-05	0.00084	19.6	1.6	1	23	494	516	494	516	0.99
13	14	1.7e-07	9.2e-06	25.7	1.3	1	23	522	544	522	544	0.98
14	14	0.00035	0.019	15.3	2.8	1	23	561	583	561	583	0.97

Sequence Information

Coding Sequence: ATGCTTTTGGACGCACCGACCATGTGTCGAGGAAATGAAAAACCCTTTGAGGCCTTTGGCGACGACGATGGTGTGGGGAGGCTGCATTCAGGACTGCAGTGCTCGCAGTGCCCCATCACCTTTAAGTCCCACAGCCTTCTCCGCCGGCACCTCATCCGCGCGCACGAAGAGGTGATGCTCTACGGCTGCACGGACTGCCTGCGGATGTTCACCAGCGTGTATGAACTTCAAGAGCATCGTAGTACAGCGCACATTAACGGTTGTGGTAAGCCTGTGCTCTGTCCCGAGTGTCCCAAATCATTCTCCTCAGAGAGATCGCTTCATCAACACAGACGCTATCATAGAGAGTCGGAGTTAATACCGTGCCCCATGTGTGATGTGAAGTTTAGGTACCCTGGGGAGCTTAGGGCTCACTTGGCTGTTCATTCTCAAGCGAGACCATTCCAGTGCCATTTGTGTGAAAAGGCTTTTAAATACAAGCGTAACCTCCAGAAGCACTTCCTAACTCATACGGGGCTGAAACCACACGAGTGCCACCTCTGTGGCTGTAGGTATGCAGAACGAAGTAGCCTAACAAAACATCTGAGGTCTCATTCCACGCCTGGTGGCAGACCCTTTAGCTGTGATGTCTGTCGTAAAAGATTTGCTGATCATTTCCAGCTTTCTGCTCATTTAGAAAGTCATATTAATTCATCCATGACTGCCATCACTTCTAATGCTCCCCTCTACGAGCAGTTTCCCCCTTCAAACAGTTTCACCAATGCTCTACAGGAACCTCTGCAATTGAAACTTGAACTGTCAGAAATCAAAAAAGAATTGTTTGTACCAGGTGATCTTCTGAAAAAATCGTTCGACTGCACGGAGTGTCCTGAGACATTCGAAAGAAGAAGTGATTGGCTTCGGCACTTCCGTATTCACAGGGGGTCCCGGCCATACAAATGTACTGAGTGCTGGAAGACATTTCGTGAATCGAGTGACTTACGAAATCACTTGTTTGATCACACGAAAGAACTTTGTGATTCTTTTAGTAATGACTCAAATGATTCGTGTTTTGCTACTAGTGATGAGCTGGAGGACATTACAGATGTGACTTCGGGTGATTCTCTACACCTTAACTCTACAAAAATTGTTGATGATATAAGTGATCATATATCCCTTGATTTAACAGAGCCAACTAGTGATGGAATGGATGACAGTATGAATTACTGTGATTTGACTGACAGCTTACGTGATGATCTAAGTGATGGAGGCTTTAGCGAGTGGTCTGGTGCTTTAAGACAATTACATTTTCGCAAAAATTCAAAACCTCATAAATGTCCAATGTGCCGCTTGCGGTTCCGTCAAGTCAACCATTTACTTCGGCACTTGGACACTCATCTTCCAAACAGACCTTATAAATGCCTAGAGTGTAACCAGTCATTCAAGCGATCAGACCATTTGCGTAGGCATATGTTAACTCACAATGCTAGGGAAAAACCCTTCAGATGTTCACAGTGCCCGGAACAGTTTGTATCGGCTCATTACTTAGGTCGCCACATGCGTAGCCATGCAGGAGACAAGCCGTACTCCTGTAAATATTGTGAATATAATTTCCGGAGCCCCAGTTCGTTAGAAAGGCATCTTCGAGTCCACAATGACAAGACGTCAAAAAGATTAGGAACCACCCCAAATAGCAAGACCTTCAAGTGTACTGAATGTTTACTTAAGTTCCGCAAGAAAAAATCGCTGATGAAGCATCTTCTGGAGCACCTCGGGCGTTGA
Protein Sequence: MLLDAPTMCRGNEKPFEAFGDDDGVGRLHSGLQCSQCPITFKSHSLLRRHLIRAHEEVMLYGCTDCLRMFTSVYELQEHRSTAHINGCGKPVLCPECPKSFSSERSLHQHRRYHRESELIPCPMCDVKFRYPGELRAHLAVHSQARPFQCHLCEKAFKYKRNLQKHFLTHTGLKPHECHLCGCRYAERSSLTKHLRSHSTPGGRPFSCDVCRKRFADHFQLSAHLESHINSSMTAITSNAPLYEQFPPSNSFTNALQEPLQLKLELSEIKKELFVPGDLLKKSFDCTECPETFERRSDWLRHFRIHRGSRPYKCTECWKTFRESSDLRNHLFDHTKELCDSFSNDSNDSCFATSDELEDITDVTSGDSLHLNSTKIVDDISDHISLDLTEPTSDGMDDSMNYCDLTDSLRDDLSDGGFSEWSGALRQLHFRKNSKPHKCPMCRLRFRQVNHLLRHLDTHLPNRPYKCLECNQSFKRSDHLRRHMLTHNAREKPFRCSQCPEQFVSAHYLGRHMRSHAGDKPYSCKYCEYNFRSPSSLERHLRVHNDKTSKRLGTTPNSKTFKCTECLLKFRKKKSLMKHLLEHLGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00733352;
90% Identity: iTF_00733352;
80% Identity: iTF_00733352;