Focc008611.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML763012.1:1892667-1898683[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 9.2e-06 0.0005 20.3 1.0 1 23 147 169 147 169 0.99 2 34 1.1e-05 0.00061 20.0 1.9 1 23 175 197 175 197 0.98 3 34 0.00015 0.0081 16.5 0.9 1 23 203 226 203 226 0.96 4 34 0.1 5.5 7.5 0.0 2 23 233 255 232 255 0.94 5 34 0.003 0.16 12.4 0.4 2 23 290 311 289 311 0.97 6 34 0.091 5 7.7 4.6 1 23 317 339 317 339 0.98 7 34 0.00019 0.01 16.2 2.0 1 23 345 367 345 367 0.98 8 34 0.0056 0.3 11.5 1.9 1 23 376 398 376 398 0.99 9 34 0.0042 0.23 11.9 0.6 1 21 429 449 429 450 0.96 10 34 0.0053 0.29 11.6 4.1 1 23 473 495 473 495 0.98 11 34 0.0026 0.14 12.5 1.5 1 23 533 555 533 555 0.98 12 34 0.00053 0.029 14.7 0.4 1 21 601 621 601 622 0.95 13 34 0.0014 0.077 13.4 0.8 1 23 654 676 654 676 0.98 14 34 2.6e-05 0.0014 18.8 0.4 1 23 699 721 699 721 0.99 15 34 0.01 0.55 10.7 1.0 1 23 746 768 746 768 0.98 16 34 0.015 0.79 10.2 3.7 1 23 792 814 792 814 0.98 17 34 9.9 5.4e+02 1.3 0.8 1 23 840 862 840 862 0.87 18 34 0.085 4.6 7.8 0.3 1 23 878 900 878 900 0.98 19 34 6.1 3.3e+02 1.9 0.8 1 23 917 939 917 939 0.94 20 34 1.7 95 3.7 1.0 1 23 962 984 962 984 0.93 21 34 7.2 3.9e+02 1.7 3.6 1 23 1007 1029 1007 1029 0.95 22 34 0.0068 0.37 11.2 0.2 1 23 1046 1068 1046 1068 0.98 23 34 0.92 50 4.5 1.7 1 19 1087 1105 1087 1109 0.86 24 34 1.6 86 3.8 5.4 2 23 1185 1207 1184 1207 0.91 25 34 4.3e-05 0.0023 18.2 0.2 1 23 1221 1243 1221 1243 0.98 26 34 1.2 64 4.2 0.2 1 23 1286 1309 1286 1309 0.95 27 34 0.00042 0.023 15.0 1.4 1 23 1333 1356 1333 1356 0.95 28 34 2.1 1.1e+02 3.4 0.5 1 23 1370 1392 1370 1392 0.96 29 34 0.028 1.5 9.3 1.4 1 23 1421 1443 1421 1443 0.96 30 34 0.00029 0.016 15.5 1.6 1 23 1480 1502 1480 1502 0.99 31 34 0.038 2.1 8.9 1.1 1 23 1546 1568 1546 1568 0.99 32 34 0.0039 0.21 12.0 0.0 1 23 1575 1597 1575 1597 0.96 33 34 0.00029 0.016 15.6 0.2 3 23 1617 1637 1616 1637 0.98 34 34 0.00032 0.017 15.4 1.0 1 23 1643 1665 1643 1665 0.98
Sequence Information
- Coding Sequence
- ATGCACGATTACTTTGAATGCGACGAGTCCCTCAACTTCTCCGTCTGCGTGATTAAGGAAGAGGCCTCTGAGCGTGAAGCCCACGGGGCGTCTTCTCCCTCGCGCGCCGAGGAGCCTAGCAGTGACCCTTTGCaggtgcccgccggcgccgcctggctcgtcctggcggcgccgccggagcagcctcccccgcagcacccgctcccgcccggaGACGTACGGGCCAAGGCCGACTCGGCCGACGACTTCGAGATCGAGTACGACGACGAGTGGTACGACGACTGGGCCAGCCGGCACCCCGCCGACGACCCGGACGACTTGCAGCCCGTCGTGATGCTGGACAGGATCAGCGTGGACTCGATGTCATGCCGGAGCCTCGAGGAGGAGCCACCTCGGGAGCGCCAGCCGGAGCCTCACCGCGGGGCCACCGTGCGGCCCTACCGCTGCCCGCACTGCCCGGCCCGCTTCACCAAGAACTTGTCGCTGGCCAACCACATGCGGATCCACGTGAACGAGAAGCCCTTCCCGTGCACCTACTGCCACCAGCGCTTCCGCCAGcggagcgcgctcgccgcccacgaGCGCTCGCACACGGTGGAGTCGCGCTTCAGCTGCGAGGAGTGCGGGCTGCGCTTCCGCTTCAGCAAGACGCTGGCCACGCACCTGCGAGACACTCACCGCTGCACGCGCCCGCTCAAGTGCGCCGTCTGTGAGGCGCTGTTCgtgtcggcgggcgcgctgcagcggcacgaGGAGCGGAAGCACGGCATcgtcccgccgccctccgcggccgccgcgcccgccgcgcccgccgcccccgcaccgcagccgcccAGGCCGCATCCCGCCGGCTTGCTGACGAACACGGTCTGCTACGTGTGCGACAAGAACTTCCCGACGCACACCGCCATGCTGGTGCACGTGCGCGtgcacgccgccggcagccgcttCCGCTGCCGCCAGTGCCCCGCCCACTTCTCCTCGATGCTGAGCCTGCGCTCGCACCACAAGGTGCACACCAGGGCCTCCGTGTTCAAGTGCAAGCTGTGCCCGCTCCGCTTCGGCACCCGCAGCTCGCTCTTCTCCCACCTCAAGCAGCACGACCGGATGAAGGGCGACAACGTCTTCCGCTGCAGCAAGTGCCTGGAGCGCTTCGTGGGCCGCAAGGCGCTGCACGCCCACGTCAAGACCcaccgcgaggaggaggccgaggaccaGATCGGACACAACCTGGAAGAACCCGAAGCCCAAGAGCCAACCCATGACGAGAACAAGAGCAAGTTGTACCAGTGCCAGAAGTGCCCAGAGGTCTTCGACAAGTATTGGAATTATTGGAACCATCGCAAGAACCTGTGCCCCGGTGTCAAAGGCGATGCCGCGCTGCCCACGCCAGGGAAGGCGTCCCCTGGGAAGGGCTAccgctgcggcacctgcgggcTCCGGTGCACGACGAGGAAGAAGCTGTACCGGCACGCGCAGAGTCACGTCATCAAGGTGGAGCCTGACACTGACGCCGACTACGTGCAGACCCTGGAGGAGAAGCCCGTCGTGGACGCCAGCACGTCGGCGAGCACATCGACCAGCCCACAGAAGACGTTCCGATGTGGCAAGTGCTCGCAGCCCTTCCCGGACAGGCGGGCCCTGCACGTCCACTCCAAGACGCACTCGGGCGCCATGGTCGTGATCGGCGTAGAGGACGACACCGTGCTGGACGCGTCGGCcctgccggagccgcccgctGAGTCTGGGTTCCCTCCGGCACCGGCCTCTGTCAAGAAAGGAAAGACCTCCAAGAATGTCTTCCGCTGCGGCCAGTGTGGAAAGTCTTACCGCGGCAGAAAGCTGCTCTGGCAGCACCGCAAAGTGTGCTTCCCCGAGGACAAGAAGAACCACGAGGATGTGCCCCCCAGTCCCAACGATACTGTGATAAAAGTTGAGCCAACAACAAAACCAAAGAAGTACCGCTGTACCAAATGCCCCGAAGTATTCTCAGACGCAGACAACCACTGGCTGCATTATAAGGTGCATGTGACGGACAACATCCACGAGATTGTCCGCTCAGACGCCACGACTGATCCCTTGGCGTCGCCTAGCTACAAGTGCAGCGAATGCGGTCTAGTGTTCCCGCACAGGGTCGGCCTCTGGTGGCACTACAAGTCCCACCTGGGTGGCGGCGAGGTCGCGGACACCTGCGTGACCagcccggcggctggcggtgACCCATTGTCCAGCCTCTTCCGCTGTCGCGAGTGCCCCGAGACGTTCCCCGACGAAGACCTGCACTGGCAGCACTACAGGACACATGTGAGCGAGCCGTGTCAGGAAGTCAGGCAGGAGGCCGCCCAGGAGGCTGAGGCGCAATCGCCGCCCTCTTACCAGTGCAAGAAATGCTCAATAACATTCTCAGACAAGGAGAGCCACTGGCAGCACTACAAGGTACACGCGGAGCTGCCCGCTTCTGAGCTGTACGAGATAGTGAAGCCTGCCAACGGGCAGCGAGAAGGTCTGCCGGGTCAGTACCGCTGCAGCAAGTGCCTGGAGTTGTTCGCCGACCTCGAAAGCCACTGGTGGCACTTCCGTGCGCACTACCAGTCCGCGGAGTTGGCGCAGCTCGAGGAGACTGAGCCCAAGTACAAGTGTTCCCAGTGCCCCGAGCTGTTCGAGGACGACAGAAGCCGCTGGTGGCACTACCGTGTCCACGCCACGGACTCGTCCAACTGCTTCGAAGTGGTGCGCAGCCGGCCCGAGTACCGCTGCATCAAGTGCTCTCAAGTCTTCCCAACCGTCGCTAATCACTGGGTGCACTACCGTGACCACTACGACGCCGAGGTGTTCGACCTGGTGGTGAACGGGCGTGTGAACGGGGAGGCTGCGCCCTCCCAGTACCGCTGCTCCAAGTGCCCCGAGCTGTTCCAGGATGTAGACGCTCACTGGGAACATTACCGCCGTCACTTCGAGTCTGTCGAGGACCGCCCGTGCCAGGAGGTGGGCATCGGCATGGAAGAGAAGGCAACAACATTCTGCTGCAACAAGTGCGACCAGATGTCCGACGACCTGGAGTCCCACTGGTGGCACTACCGCTCCCACATGGACGTtgacgacgacgtggagctGGACCAGACGGGGGCCGTCACATTCCGTTGCGTGGAGTGTTCGGAGACGTTCCCGGACGCCGACAGCCAGTGGCTGCACTACCGCCAGCACGTGGACGCCGAGGTCTGCGAGGAGGTGTTGCCGCAGGACGTGAAGCCCAAGCTGTACCCGTGCTCCAAGTGCTCCGAGGTGTTCCCGGACCGGAGGAGCCGCTTCCTGCACTGCGCCGTACACGTgacgccgcgcggggccggcccggggcccagcgcggccgtgcAGCTGGACAAGGGCAAGGGCTTGCAGTGCAACGCCTGCCGGGAGATCTTCCTCGACACGGAGAGCCACTGGTGGCACTTCAAGACTGTGCACAAGCCGGACGCCGAGGAGGTCGGCCCCGAGACGTACCAGATAGTGGAGCTGACAGCTGACCCCACCGAAGACCCGCTGACAAAGCGCTGCCAGTGCAGCAAGTGTCCAGAGACGTTCCCTGATCGCAAGGCTCACCACCGTCACTATAAGGCCGTTCACTCCAAAGAGGGCCTGACATCGCCCTTGGAGGCGGGGGGCTTCCCCTGCAGCAAGTGTTCAGAGGTGTTCGCGGACCGCAGGAGTCTTTGGTGGCACTACCGTGTCCACACCGACGCGTCTGAGTCCACGGCCGTGGAGCTTGCGGCTGAGGCGCCCGCCCAGCTGCCCGCCCAGCTGCCCGCCCAGCTACCCGCCCAGCTACCCGCCCAGCTGTCCGCCGAGCGGTCTGGGGTTTACTGCTGCACCATCTGCTCTGAGCTGATCGCGGACGGCGACGACCTGGAAACTCACGTGAAAGTGAAGCACGGGGAGCCTCCCGTGGAGGACGCCACAGAGGCTGCCGTGGACGACGCCACAGAGGAGCAGTCTGGGGTTCACTCTTGCACCCACTGCTCTGAGCTGTTCACCGACCGAGGGGACCTGCAGGCTCACATTAAAGGAGAGCACAGCGCGGTGGAGAACGAGGACGCGTCTCGCGTCAAGGAATACCGGTGCAGCAGGTGCCCAGATGTGTTCCCCGACCTGGAGCAGCACTGGTGGCACTTCCGGGTCCACACTGACGCGGAGTTCGTGGCCTCTGTTCGTGGGCAGGACATCGAAAAGCCCGCCGAACCGCGGCCCGAGACGACACCCAGCAGGTACCAGTGCAGCAAGTGCCCACTGAGCTTTCCGGACCGCAAGGCCCATTGGGCACACTACAAGAACCACAAAGAGGCCAGGATCGTGGTGAAATCAGAACCAGCCAAGGTGAGCAGCAGGGTGCGTTTATCGGCAGAGGGCCCGGCACAGGCGGCCGCTGTCAAGCAGACCAAGACGTACAAGTGCAACCAGTGCTCCAAGGTGTTCCAGCTCTGGATAAACCTGTTTAACCACAAGAAGGTCCACGACCTTGCGAATCGCGCCGCCCAGAGCCAGGGCAGCCAACCTGCGGAGCATCCGCCCACCCCTACCATCCCGGCGGCCGAGACGCCAGCGCGCAACTTCCCCTCCTCGAAGGTCGTCGCGGGCCGCTCCTTCAAGTGCAGCGAGTGCCCTGCACGGCTGAGCAGCCACCGCGTGCTGTGGGCGCACTTCAAGACCCACAAGCAGAGCGGGCGCATGTACCCCTGCGTCGACTGCAGCGCCAAGTTCAACTCGCggggcgccctccgcgcgcacgccgacgtgcacctcgccccgccggacccggaGCAGAAGCAGGATGCTGACGAGCCCGGCGCCGTGGCCTGCACCAAGTGCGACGCCGTCTTCAAGAACAAGGTGGCCCTGGGGTCGCACCAGCGCGTCCACCCTGGCCCGAAGCCCTTCAAGTGCAAGCAGTGCGGTGCGCGCTTCACCAACGGGGCTAACATGCTGAGGCACACAAAGCTGCATAAGGGGAAAAAGGCCTTGAAGTGA
- Protein Sequence
- MHDYFECDESLNFSVCVIKEEASEREAHGASSPSRAEEPSSDPLQVPAGAAWLVLAAPPEQPPPQHPLPPGDVRAKADSADDFEIEYDDEWYDDWASRHPADDPDDLQPVVMLDRISVDSMSCRSLEEEPPRERQPEPHRGATVRPYRCPHCPARFTKNLSLANHMRIHVNEKPFPCTYCHQRFRQRSALAAHERSHTVESRFSCEECGLRFRFSKTLATHLRDTHRCTRPLKCAVCEALFVSAGALQRHEERKHGIVPPPSAAAAPAAPAAPAPQPPRPHPAGLLTNTVCYVCDKNFPTHTAMLVHVRVHAAGSRFRCRQCPAHFSSMLSLRSHHKVHTRASVFKCKLCPLRFGTRSSLFSHLKQHDRMKGDNVFRCSKCLERFVGRKALHAHVKTHREEEAEDQIGHNLEEPEAQEPTHDENKSKLYQCQKCPEVFDKYWNYWNHRKNLCPGVKGDAALPTPGKASPGKGYRCGTCGLRCTTRKKLYRHAQSHVIKVEPDTDADYVQTLEEKPVVDASTSASTSTSPQKTFRCGKCSQPFPDRRALHVHSKTHSGAMVVIGVEDDTVLDASALPEPPAESGFPPAPASVKKGKTSKNVFRCGQCGKSYRGRKLLWQHRKVCFPEDKKNHEDVPPSPNDTVIKVEPTTKPKKYRCTKCPEVFSDADNHWLHYKVHVTDNIHEIVRSDATTDPLASPSYKCSECGLVFPHRVGLWWHYKSHLGGGEVADTCVTSPAAGGDPLSSLFRCRECPETFPDEDLHWQHYRTHVSEPCQEVRQEAAQEAEAQSPPSYQCKKCSITFSDKESHWQHYKVHAELPASELYEIVKPANGQREGLPGQYRCSKCLELFADLESHWWHFRAHYQSAELAQLEETEPKYKCSQCPELFEDDRSRWWHYRVHATDSSNCFEVVRSRPEYRCIKCSQVFPTVANHWVHYRDHYDAEVFDLVVNGRVNGEAAPSQYRCSKCPELFQDVDAHWEHYRRHFESVEDRPCQEVGIGMEEKATTFCCNKCDQMSDDLESHWWHYRSHMDVDDDVELDQTGAVTFRCVECSETFPDADSQWLHYRQHVDAEVCEEVLPQDVKPKLYPCSKCSEVFPDRRSRFLHCAVHVTPRGAGPGPSAAVQLDKGKGLQCNACREIFLDTESHWWHFKTVHKPDAEEVGPETYQIVELTADPTEDPLTKRCQCSKCPETFPDRKAHHRHYKAVHSKEGLTSPLEAGGFPCSKCSEVFADRRSLWWHYRVHTDASESTAVELAAEAPAQLPAQLPAQLPAQLPAQLSAERSGVYCCTICSELIADGDDLETHVKVKHGEPPVEDATEAAVDDATEEQSGVHSCTHCSELFTDRGDLQAHIKGEHSAVENEDASRVKEYRCSRCPDVFPDLEQHWWHFRVHTDAEFVASVRGQDIEKPAEPRPETTPSRYQCSKCPLSFPDRKAHWAHYKNHKEARIVVKSEPAKVSSRVRLSAEGPAQAAAVKQTKTYKCNQCSKVFQLWINLFNHKKVHDLANRAAQSQGSQPAEHPPTPTIPAAETPARNFPSSKVVAGRSFKCSECPARLSSHRVLWAHFKTHKQSGRMYPCVDCSAKFNSRGALRAHADVHLAPPDPEQKQDADEPGAVACTKCDAVFKNKVALGSHQRVHPGPKPFKCKQCGARFTNGANMLRHTKLHKGKKALK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -