Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: su(Hw)
Assembly: None
Location: ML763208.1:259219-264619[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.5e-05 0.0013 18.9 1.4 2 22 145 165 144 165 0.96

2 13 2.1e-06 0.00011 22.3 3.7 1 23 237 260 237 260 0.97

3 13 2.3e-05 0.0012 19.0 0.6 1 23 266 288 266 288 0.98

4 13 0.00014 0.0076 16.5 1.2 1 20 294 313 294 315 0.95

5 13 1.2e-07 6.6e-06 26.2 0.4 1 23 326 348 326 348 0.98

6 13 3.6e-05 0.002 18.4 0.6 1 23 358 380 358 380 0.99

7 13 8.2e-07 4.4e-05 23.6 0.4 1 23 386 408 386 408 0.98

8 13 5e-06 0.00027 21.1 1.5 1 23 414 436 414 436 0.99

9 13 5.3e-06 0.00029 21.0 4.4 1 23 442 464 442 464 0.95

10 13 0.00034 0.019 15.3 0.9 1 23 470 493 470 493 0.96

11 13 2e-05 0.0011 19.2 0.5 1 23 499 521 499 521 0.94

12 13 1.5e-07 8.1e-06 25.9 1.3 1 23 527 549 527 549 0.98

13 13 9e-07 4.9e-05 23.4 2.0 2 23 556 578 556 578 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.5e-05	0.0013	18.9	1.4	2	22	145	165	144	165	0.96
2	13	2.1e-06	0.00011	22.3	3.7	1	23	237	260	237	260	0.97
3	13	2.3e-05	0.0012	19.0	0.6	1	23	266	288	266	288	0.98
4	13	0.00014	0.0076	16.5	1.2	1	20	294	313	294	315	0.95
5	13	1.2e-07	6.6e-06	26.2	0.4	1	23	326	348	326	348	0.98
6	13	3.6e-05	0.002	18.4	0.6	1	23	358	380	358	380	0.99
7	13	8.2e-07	4.4e-05	23.6	0.4	1	23	386	408	386	408	0.98
8	13	5e-06	0.00027	21.1	1.5	1	23	414	436	414	436	0.99
9	13	5.3e-06	0.00029	21.0	4.4	1	23	442	464	442	464	0.95
10	13	0.00034	0.019	15.3	0.9	1	23	470	493	470	493	0.96
11	13	2e-05	0.0011	19.2	0.5	1	23	499	521	499	521	0.94
12	13	1.5e-07	8.1e-06	25.9	1.3	1	23	527	549	527	549	0.98
13	13	9e-07	4.9e-05	23.4	2.0	2	23	556	578	556	578	0.97

Sequence Information

Coding Sequence: ATGTCGGAGGCAAGTGGGAAAAAGAAATCTATTCCCAGGACGTATGGTGGGCGATCTGGGAAGAAGATTAAACCTGATCCGGATGATGGAGCAGACGAGATGGAAGAAGGTACTCCAGAAACTGAAGAATTAGAAGCTCCCTTGTCGCCTGCACCTCGAACAGGTCTTCGAGTAAGAAAACTTCCTCTTGCAAGGGAAAACAATGAATCAAATGAAGAATCTGATTCTGGAAATAGCAAAAAGAAAGCTAAGGGTGGAgttaataataacaataatcaaGGCAGTGGGAAAGGTGCTGGTCGTAAGCCTGTAACCCCAAAGAATGTTGTCGACCCTGTGTCAGAGAATGATGGCAATACTGAGGGAGAAGAAGACCTTGGTGCCTTAGATGGGGATGTTGGCCCTAATCCTTCAACACCTGTGAACGACAGTAAATGCCATCATTGTTTTAAGGTCTTTGCAACCCCAGCTAGTCTTAAGATTCATCTGAAGACCTGTTCAGCTTTGACGACAGATGGGAACATTGGATTGACTGTGAATCAGGGTCTCATTGTCCCTGATCATCTTGATAACATGCATGGAGATGAAAACGATATGCTAGCTGCTGAAAACAATGTGATGGAAGCAGGCAGTTATTCTGCAGAAATGCCTGTTGGAAAGTGTCATTGTTGCGGGGAAGATATTGATGGAGCTCATGAGAATGGAGAGTTTTCATGCCACGACTGCAACAAGCAGTTTAAACTCAAGTCTAGTTTGGAACGGCATCGGAGAGTGATCCATGCTGAAGGTGATACGTACTCATGCCCAGAATGTAATGCTCGCTGTCCTGACAAAGGAACACTTGCAAGACACATGTATACCCACACAGGGTTGAAGCCATATGAATGTGAAAGATGCAACATCAAGTTTAGTAGAAAATATCATCTGGACAGACATGTTTTGCAAAGTGGTTGTGATGGTAATGCTCGCCCACAGTATCCTTGCCAGGTCTGTGGCCGAATGTTTAACCGGAAAGACAACCTCCGTGAGCATCTGCGTGCTCATGCTGGTCAGGTGAAACGAAAACGCACCTACACCTGCGAGATGTGTGAGAAGGAATTCCAAGGCACAACCCTACTGCAAATTCACATGAGAACTCACACTGGTGAAAAACCCTATGCTTGCTCATACTGCCCGAAAGTATTCCCCTCTAGCAGTGCAATGAAGAAGCATACCCGTATCcatactggagagaaaccatatgaGTGCAAAGAGTGTTATGCAAAATTCACAGCTAAGGAGACCCTGAATAGGCACATGAGAACTCACACTGGAAATAAACCACATAGCTGCAAATATTGTGGCAAAACATTCATTCAACTCTCTCAATTACGGGCCCACATTTTCCATCACACAGgcGAAAATGGATACACCTGTGATATCTGTAGCAAGGCTTTCAATCGCAAGACACGTCTTGACCTTCATGTTAAGTATGTGCATGAGGGGgcaaagccttttgagtgcactgagtgcaacaaaacatttgtgCGACGTGAAGACATGGCCCGGCACACTGTTTTGCACTCTGGTCTCAAAGCCCACAAGTGCCCAATTTGTGACAAATCATTTGCCATGAAATCATCTCTGAAGATTCATTTGCTGACTCATACCAAGGAACCCCCCCGGTCATGCGATGAATGTGGTCGTGCTTTCATCCGTCAAGACTGCTTGCTGCGCCACATGCGTACTAAACATCGTGACATGCTTGAAGAAATTTTGGCTGAagcagaaaagaagaaattgcaAGCCCAGTTGCTTGTTGCTGCCAATGACAACGAAGGGGAAACTGCGGGTCCTACCAGGACAATTCCCATTCCAGCTAAGCATGTTTTGGAAGACGGTGCCCTTGCAGACTCTGTCCGTGAGCTTCTTACTTTGCTTGTGGATGAAGCAACACTTCGGGCATTTGGCTGGCCAGATGCTCCAGTCGACCAGTTACTAGAAGCAGTCATCCGACGATGTGGTCATCCTCCAGCTGGATCTGATGATCTACCATACAGTGACCGGCTACGTCACAATGCAAAGCTTCTGTTCACTGTTGTTATTGATGATACTGCAGTCAAGACGCTTCTTAATAATCAGACTGTAGATGAAGTTATATTGCATGTGCTGCGTCTTGCAAAGTCATAG
Protein Sequence: MSEASGKKKSIPRTYGGRSGKKIKPDPDDGADEMEEGTPETEELEAPLSPAPRTGLRVRKLPLARENNESNEESDSGNSKKKAKGGVNNNNNQGSGKGAGRKPVTPKNVVDPVSENDGNTEGEEDLGALDGDVGPNPSTPVNDSKCHHCFKVFATPASLKIHLKTCSALTTDGNIGLTVNQGLIVPDHLDNMHGDENDMLAAENNVMEAGSYSAEMPVGKCHCCGEDIDGAHENGEFSCHDCNKQFKLKSSLERHRRVIHAEGDTYSCPECNARCPDKGTLARHMYTHTGLKPYECERCNIKFSRKYHLDRHVLQSGCDGNARPQYPCQVCGRMFNRKDNLREHLRAHAGQVKRKRTYTCEMCEKEFQGTTLLQIHMRTHTGEKPYACSYCPKVFPSSSAMKKHTRIHTGEKPYECKECYAKFTAKETLNRHMRTHTGNKPHSCKYCGKTFIQLSQLRAHIFHHTGENGYTCDICSKAFNRKTRLDLHVKYVHEGAKPFECTECNKTFVRREDMARHTVLHSGLKAHKCPICDKSFAMKSSLKIHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRTKHRDMLEEILAEAEKKKLQAQLLVAANDNEGETAGPTRTIPIPAKHVLEDGALADSVRELLTLLVDEATLRAFGWPDAPVDQLLEAVIRRCGHPPAGSDDLPYSDRLRHNAKLLFTVVIDDTAVKTLLNNQTVDEVILHVLRLAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732022;
90% Identity: iTF_00732022;
80% Identity: -