Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763014.1:1430514-1438715[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.033 1.8 9.1 0.2 2 23 235 255 235 255 0.96

2 20 2.1e-05 0.0011 19.2 0.1 3 23 263 283 261 283 0.96

3 20 5.7e-07 3.1e-05 24.1 1.3 1 23 289 311 289 311 0.98

4 20 5.5e-05 0.003 17.8 2.9 1 23 317 339 317 339 0.99

5 20 0.00038 0.02 15.2 2.9 1 23 345 367 345 367 0.98

6 20 0.00091 0.049 14.0 7.1 1 23 372 394 372 394 0.98

7 20 1.1e-06 5.9e-05 23.2 0.7 1 23 405 427 405 427 0.99

8 20 5.5 3e+02 2.1 0.6 2 23 527 548 526 548 0.86

9 20 2.7e-05 0.0015 18.8 0.6 1 23 554 576 554 576 0.95

10 20 0.00013 0.0069 16.7 0.2 2 23 582 603 581 603 0.96

11 20 7.1e-05 0.0039 17.5 2.4 3 23 610 631 608 631 0.93

12 20 0.00013 0.0072 16.6 1.2 1 23 634 656 634 656 0.97

13 20 0.00016 0.0086 16.4 6.4 1 23 662 684 662 685 0.95

14 20 0.0017 0.09 13.2 0.0 1 23 690 712 690 712 0.95

15 20 0.027 1.5 9.3 1.1 1 14 718 731 718 732 0.91

16 20 0.0044 0.24 11.8 0.2 1 23 762 784 762 785 0.95

17 20 7.3e-05 0.004 17.4 1.3 1 23 839 861 839 861 0.97

18 20 1.6e-05 0.00086 19.5 3.2 1 23 867 889 867 889 0.99

19 20 6.3e-07 3.4e-05 23.9 1.8 1 23 917 939 917 939 0.98

20 20 0.006 0.32 11.4 1.6 1 21 945 965 945 966 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.033	1.8	9.1	0.2	2	23	235	255	235	255	0.96
2	20	2.1e-05	0.0011	19.2	0.1	3	23	263	283	261	283	0.96
3	20	5.7e-07	3.1e-05	24.1	1.3	1	23	289	311	289	311	0.98
4	20	5.5e-05	0.003	17.8	2.9	1	23	317	339	317	339	0.99
5	20	0.00038	0.02	15.2	2.9	1	23	345	367	345	367	0.98
6	20	0.00091	0.049	14.0	7.1	1	23	372	394	372	394	0.98
7	20	1.1e-06	5.9e-05	23.2	0.7	1	23	405	427	405	427	0.99
8	20	5.5	3e+02	2.1	0.6	2	23	527	548	526	548	0.86
9	20	2.7e-05	0.0015	18.8	0.6	1	23	554	576	554	576	0.95
10	20	0.00013	0.0069	16.7	0.2	2	23	582	603	581	603	0.96
11	20	7.1e-05	0.0039	17.5	2.4	3	23	610	631	608	631	0.93
12	20	0.00013	0.0072	16.6	1.2	1	23	634	656	634	656	0.97
13	20	0.00016	0.0086	16.4	6.4	1	23	662	684	662	685	0.95
14	20	0.0017	0.09	13.2	0.0	1	23	690	712	690	712	0.95
15	20	0.027	1.5	9.3	1.1	1	14	718	731	718	732	0.91
16	20	0.0044	0.24	11.8	0.2	1	23	762	784	762	785	0.95
17	20	7.3e-05	0.004	17.4	1.3	1	23	839	861	839	861	0.97
18	20	1.6e-05	0.00086	19.5	3.2	1	23	867	889	867	889	0.99
19	20	6.3e-07	3.4e-05	23.9	1.8	1	23	917	939	917	939	0.98
20	20	0.006	0.32	11.4	1.6	1	21	945	965	945	966	0.95

Sequence Information

Coding Sequence: ATGGATAACTCTGATATAATGGATGTGTGTCGCCTTTGTCTAGATAAAGATGGGGTTACAATACCCATATTTGAAGGAGAAGGTGCAGAACGGGAGATATGTTCGAAAATTGGATCCTGTCTTCCTGTGAAGGTCTCTAGCGATGATCCTCTCCCAAAGAAAATTTGTGATGATTGTACTCATAAAGTGGAACTTGTCTATTCCTTTTGGAACACAACGACGAACTCGGAAAAACAATTATTGGAATGGTTGGGCTTATGTGAACCCAACCATGAAACCCCTATGGATTTGTTAAAGACTGAAATGGTTATACTTAAAGGAGAACACGGCGCTGATCTAAGTCACATGGATCTTGTAGAGGATTCCCAAGATTTGCTTGATCAGAGTGGTGACACAGCAGAGGGtagtgaggaggagggtggcaggGAAGAAGATCCAGGTGGAGGTGACTATCGCTATGAAGAGGGGACATCAAATGATCCCTCATCTTTGGATGTCCCACATCCTGAGCCGTTACCTGAAGCTGGTCCATCGAGAGTATTGCAACAATCTCAACAGCCAAGTCAGCCTCCTGCCCAACAGATACCAGCATCACAATCCACACCAGAGCAGCTGACTCCAGAAATAAACCCTATAAGATACTGTGACTCCAATGAGAATGgtgggaagagggaggaagtTCCCTCCAAGGCTCAGAAAGAAGTGTGTGATGTTTGTGGGAAAAAGTATGTTGCAAGTTTCATGATTGTGCATAAGCGGACCCACACAAGTGAAAAACCCCTTGATTGTCCTGTTTGTGGTACATCATTTGTAAATTACAAAGCTCTGCGCAGTCATATGGTGAGCCACTCAGATTATAGACCTTTTTCATGTGAGATTTGTGATCGAAAATTCAAACGGAATAATGAACTAAACATGCATATGAAAATTCATTCTGGTGAGAAGGCTTACCGCTGTGATCTTTGTGACTATTCTTGTGTACAGAAATCTAATCTAGTAATCCATAAAAAACGTCACAGTAATGAATATAGGTTCATGTGTGATATTTGTGACAAAGGCTGCTACACTACTCAAGAATTACAAAAACATAAGATGACCCACATGGATATTGCTTTTAAATGCAAGATCTGCAACAAAGAATTCCATCATAAATATGGTTTAACAATGCATGAGAAAAAGCATGATCCTAACTATGAACCTCCTGTTGGACAGTATAAATGTGAACTATGCGGAAAGAGCTATGTTAAGTATGGTGGTTTAAAGGTTCATATGAGGAAACATACTGAATCCCACATGGAGGTTGAGGAAATTCTTGAAGAGCCAGAAGATCTTAATGAAGTTGCCCAAGCTTCATTGAGAGATGCCGATGTTGCTGATGCAGATGTGATCATAGCTTCAACACATGATACATCAATACCAATTATGATAGAAGATGAAAGGGAATTGACTAGCCTACTTTTCCTTCTAAATATCTATCTGACTTGTAATCCATTTAATATTCGTGAAGGGATTGAGTTCAAGTCGTTTGCGTTTCTTTCCAGACCTACAGCTGGCTCTGGACCTTCAGGTGAAAGACTCAGGTGTGAAATCTGTCATATCCAGGTCACAACCACTGAGATGGAAGATCACCTTCAGAAGTTACATTCTAAAGCTAGGAGTTTCTTATGCAACATttgcaatatttattttaacaaCAAATCAGCTCTAATTCGTCATAGAAATATTCATAATTCACCAAGTTTGAAGTGTGAGTTGTGTGGAGCCTTGTTTACTTATCCATATCAGTTGCGAAGACATGCTAGAGGACACAGAACAAAATTTCATTTGTGTCAGTCCTGTGATAAAACCTTCACCTCTAAAGATAGTTTGAAACAACATGTAATACGTGAGCACAAATCATACATTTGTGATGTATGCAAgaaatcatttaaaatttattCAGACTACAAAGTTCACTTAAAGTTACATTTAAACATAAAAATACATACATGTGATGAATGTAGCCATGCATTTGCTAGAAAATCTTCTTTGAAGTCTCATCTGAATAGACATCACAAAACTTATAAATTTATTTGTGGCGTTTGTGGGAAAGGGTTTTATGTTGCTTCTGAATTTAGTGCTCACAATTTGATTCACACTGGCGATAGTCCTCACAATTGTTCAACTTGTGGCAAGTCATACAGCCGTAAAAGTGCGTCAATCCTCACTGAGAAGGCCAACCGCATCGCCGCCATGCTCAAGGCGGCTGCTGCATCGGGTTCCTTGAGCCGTGCCACCCGGACATTCCCTTGCCCCGACTGCGACCTGATCCTGCCCAGTCGTCAGCGGCTCAACCAGCACTGGAAGGTGCACCACGAGACGCCGCAGCTGAACCCAGTGTCCCCGCGGCCCAAGCCGCAGCCCATCGACGAGGAGGAGCTAGAGGgtgagcgcgctgcggcggtaGCGGCCGCCGTCAAGGTGGAGGTGCACTCGGGGAGTGAGGACGAAATATTGAACGTGCCGCAGGCGGTGTTTGAATGTGCCCAGTGCCACAAAGAGTTCAGCAGCGAAAAGTCGCTTAAAGTGCACCAAGTGGTACACTCGGAGGAGCGCCCCTACACGTGCAACGTGTGCTTCAAGTCGTACAAGCGCCCGTATGAGATGAAGATGCACCAGCGCAAGCACACGGAGCAGAAGAACCTGCAGTGCAACGACAAGCCCGGCAACCTGACGCTTCACGAGCGGGTGCATACCGGCGAACGGCCCTACACCTGCGACACCTGCGGCAAGTCGTTCTCGCAGCGATCCACGCTCGTGATCCACAAGCGCTACCACACTGGGCAACGGCCTTACGAATGCCCGCACTGCCAGAAGGGCTTTGTCTGCAAAGCTCTGCTCAATTCTCACCTCAAGAACAGCTGTTATACAGCGGGCTGA
Protein Sequence: MDNSDIMDVCRLCLDKDGVTIPIFEGEGAEREICSKIGSCLPVKVSSDDPLPKKICDDCTHKVELVYSFWNTTTNSEKQLLEWLGLCEPNHETPMDLLKTEMVILKGEHGADLSHMDLVEDSQDLLDQSGDTAEGSEEEGGREEDPGGGDYRYEEGTSNDPSSLDVPHPEPLPEAGPSRVLQQSQQPSQPPAQQIPASQSTPEQLTPEINPIRYCDSNENGGKREEVPSKAQKEVCDVCGKKYVASFMIVHKRTHTSEKPLDCPVCGTSFVNYKALRSHMVSHSDYRPFSCEICDRKFKRNNELNMHMKIHSGEKAYRCDLCDYSCVQKSNLVIHKKRHSNEYRFMCDICDKGCYTTQELQKHKMTHMDIAFKCKICNKEFHHKYGLTMHEKKHDPNYEPPVGQYKCELCGKSYVKYGGLKVHMRKHTESHMEVEEILEEPEDLNEVAQASLRDADVADADVIIASTHDTSIPIMIEDERELTSLLFLLNIYLTCNPFNIREGIEFKSFAFLSRPTAGSGPSGERLRCEICHIQVTTTEMEDHLQKLHSKARSFLCNICNIYFNNKSALIRHRNIHNSPSLKCELCGALFTYPYQLRRHARGHRTKFHLCQSCDKTFTSKDSLKQHVIREHKSYICDVCKKSFKIYSDYKVHLKLHLNIKIHTCDECSHAFARKSSLKSHLNRHHKTYKFICGVCGKGFYVASEFSAHNLIHTGDSPHNCSTCGKSYSRKSASILTEKANRIAAMLKAAAASGSLSRATRTFPCPDCDLILPSRQRLNQHWKVHHETPQLNPVSPRPKPQPIDEEELEGERAAAVAAAVKVEVHSGSEDEILNVPQAVFECAQCHKEFSSEKSLKVHQVVHSEERPYTCNVCFKSYKRPYEMKMHQRKHTEQKNLQCNDKPGNLTLHERVHTGERPYTCDTCGKSFSQRSTLVIHKRYHTGQRPYECPHCQKGFVCKALLNSHLKNSCYTAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -