Focc005571.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella occidentalis
Gene Symbol
ZNF236
Assembly
None
Location
ML763056.1:105641-120098[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.024 1.3 9.5 0.2 1 23 287 309 287 309 0.97
2 17 5.9e-05 0.0032 17.7 0.3 1 23 315 337 315 337 0.98
3 17 3.8e-05 0.0021 18.3 0.3 2 23 343 364 342 364 0.96
4 17 0.17 9 6.9 0.1 3 23 372 392 370 392 0.95
5 17 4.4e-06 0.00024 21.3 1.1 1 23 405 427 405 427 0.98
6 17 1.9e-07 1e-05 25.6 2.1 1 23 450 472 450 472 0.98
7 17 4.9e-08 2.6e-06 27.4 0.3 1 23 478 500 478 500 0.98
8 17 6.9e-06 0.00038 20.6 0.4 1 23 506 529 506 529 0.98
9 17 0.00033 0.018 15.4 1.1 1 23 539 562 539 562 0.96
10 17 0.00083 0.045 14.1 4.6 1 23 701 723 701 723 0.98
11 17 3.4e-07 1.9e-05 24.7 2.4 1 23 729 751 729 751 0.99
12 17 1.5e-07 8.4e-06 25.8 1.3 1 23 757 779 757 779 0.98
13 17 0.00052 0.028 14.7 2.4 1 23 785 807 785 807 0.96
14 17 0.00012 0.0066 16.7 5.6 1 23 869 891 869 891 0.97
15 17 6.8e-06 0.00037 20.7 0.5 1 23 897 919 897 919 0.99
16 17 3e-07 1.7e-05 24.9 0.6 1 23 925 947 925 947 0.98
17 17 0.023 1.3 9.6 9.6 1 23 953 975 953 975 0.97

Sequence Information

Coding Sequence
ATGGAATCTGTTCAACTTCTTGCTGAGCCTGCAGAGGTACTGGGTGGACATGTTTTGTCTCTCTCCGCTGGTGATGTTCTTCGGGACAGTGGCATTATATTTACCCAAGATGCACTATCAAACATTATTACTACTGATGCTGGTGGTGAAGAAGTTCAAACATTTATGTCCTTACCTGTCCACCTCCTTCAAGACAATTCCTATGTTGGCCCTGTTCTTGTCAAAAATGCTGCTGGGAATACCTTCTTGATAGATCCCAGACAGTGTAGTGTTTTAGGAGATGGGAGCGACGATGGTCAAGCCCAGCTAATCATCACTCCGAGCACTGAAGCCATCTCTTCTGATCAGTCAACATCAAACATACTGGGTTTGGATATGGACTTTCCGTACATTACTAATGTTGGTAATGTAGTCCTTGGTGAAAATGGAGGTGTAGCTGAAAATAATATTGATGTTAACTCCTCGACAATTCTTCAACTTGAAAGCCGTATGATTCAAGGAGCAAGCCAAATGTTACAAGGAGCCAACAAATTGCTCCCTGAGGGAATGTGTATTGATATGTCCCAATTAAGCATTGTTACCTCAGATGGTGTTGTATCATACGTGACTGCAGCATCTGCCGACAGTGCCCTTCCTGAAGCAAATGTAGTGGCACCAGCTCTCCCTCAAACTTCTCATGGCTGTGGAGATGAAGATTTCAAGGAATCTGTTATTTTTACATCTGAAGCTACAATTTCTCAAGATAATCCTAGCAATCTAGAAATTCACCCTGCCAAAGTAAAACGAGGCCGTGGAAGACCTCGTAAAAGTGACCCCAATCAAGACGATGTAATGGATCCTCCTGTAGGAAAGCCACCTTATAAATGTGATACGTGTGGCTATGAAGCAGCTCTCTGGGGAAGATTGAAGAGACACAAGGAAAGCCATCGCAATGAGAAACCACATCGCTGCAAAGTTTGTGGGGCTTCATATAATGTTGAGGCTAATCTCACATTGCACATGGCTACTCACAATCAAGAACAACTCAAATGTCCTGAGTGTCAGAGAGAGTTTTCTCGAGTTGCAAGTTTAAGGTCTCACCTAATGCTCCATGAAAGAGAGGACAATCTCTTCTGCACTGAATGTGGGGATGAGTTCGCTTTGCAGtaCCAATTGGACAGTCATGTTATGGAGCACCAAGATGAGTGGGTGTCAAAAAATGTTGAGAAAATTTATGAGTGTCAGAAGTGCCAACGTCAATTTTCAAAGGCTTCAGCTCTGAAAGAGCACATGCGAGACCATGTCAAGGTCAAACATTCATTAGTACGTCGAAAACATGATCGTACTCAAGATAGATCAGAATTTTCTCACAAGTGTACTACATGTGGGAAGGTTTTCCAAAAGCCTAGTCAGTTAGTTCGTCATATGAGGATCCACACTGGAGAAAGACCTTATCCGTGCAATATTTGTGGTAAAGCCTTTAGCCAAAAGGGCTCTTTGCAAATTCACATGACCAAACACAATGGCGAGAAACCTTATGAGTGTGATTTTTGCAGTGCAAAGTTTAGTCAAAAAGGTAATCTCCGAGCACACATACAAAGAGTCCATTCAATTCCTCAACAAGGCACTGTAACATTTAGGTGCAGTGAATGCCCATGTATCTTTAGAAAATTAGGTAGTCTTAATTCTCACATGGGGCGTGCTCATAGTCAAGTAGATAATGTGAAAGCATTGAAAACTGAGACCCTGAACTCTGAGCAAATAATGCAAGTAAATGTTAACCAAATTATGGCCCAAATAGCTGCTTTGGAGACAGTCAACAGTTGTGATGAGACTCAGAGCACACCTAACATTAAAGATCAAGGAAAGGAAGATTCCGTTTCTGAAACAGCACCATCAACTTTAAAACACCCAGGTCCCTTATCTGTCAAAAAGCCTGATTCTAGTGACATTCTTCAAGAAGCTATAAGTAAGAGTGGTCTCGAAGGGAAGCCAGAACTAGAAGTCTCAGCCAaCAAAGCAACAGCTGTTACTGGATTCATTACTTTAGCAGACAAATCCTTGGATGGAACAGTGAGGCGCTATACTATTAGACAGAGGAAAGTTGGAGGTGTGCGATGGCATCAGTGTTCATTTTGTTGCAAGGAGTTCAAAAAGCCATCTGATCTTGTCCGTCACATACGTATTCATACTCACGAAAAGCCTTTCAAATGCCCTCATTGTTTCCGAGCGTTTTCTGTGAAATCAACATTAACTGCCCATATTCGTACCCATGGTGGTTTAAAACATTACTCTTGTCCAGATTGTAACAAAAATTTTTCTACAACAAGTAGTCTTAAAGTTCACCAAAGGCTTCACAATGGTGAGAGGCCATTCCCTTGTAGTGTATGTAATCGAACATTCCGGACATCTGGTCACAGACAGACTCATTGGCTACAGCACTGTGATCCCCAATCAAATCTCTCAACTGGATCCAAAAAAAGGCgaagaaaatcaaaaaaatcagaattacAACCTGGAGAAAATCTTCCAGATGTACTACTTGGAGAACCAATTGTCATTACAGAATCAGGATTAGTTCAAACTGAAATGATAAAACCTGATAAACAGCCTGGACCAAGGCTTCATAGCTGTGATCAGTGCAATGCCTCTTTCCGCAAAAAGAACCATTTGCGCAACCATCTCAGAATTCACAGTGGAGAACGTCCATTTCAGTGCAATATTTGTTCTAGGAGTTTTGTATCCAATGGTGTACTGAAAACACACATCCTTACTCATGATGCAGTTAAAGCGTTCAAATGTGAGATATGTCCAACAGCATTTTCCACTCAAGGTAGTTTAAAGAGACATCAGAGCATGCACAGTGATAGCAAACCTTTTATGTGTCCCTATTGCCACAAGACATTTAAGCACAAATTGGCATGTAAAAAACACATCAAAAACCATAAAGTTGAAGTAGCTCGCGCTGTAGCTCAGCAAGCAAATGAACTTCAAGAGCAACAATTTGTTGTGTCTGTTGGAGACAGCTTTAACGGGGGTGAAATAATTGTTCCCAACTTCCAGGGCTTTTCAAACAATGCTCTTGGTGGATCAGATAACCTTGAAGAAAGTGTAACAGGTACAAATTTCAAACATAATATTACATTATCTAATGCATag
Protein Sequence
MESVQLLAEPAEVLGGHVLSLSAGDVLRDSGIIFTQDALSNIITTDAGGEEVQTFMSLPVHLLQDNSYVGPVLVKNAAGNTFLIDPRQCSVLGDGSDDGQAQLIITPSTEAISSDQSTSNILGLDMDFPYITNVGNVVLGENGGVAENNIDVNSSTILQLESRMIQGASQMLQGANKLLPEGMCIDMSQLSIVTSDGVVSYVTAASADSALPEANVVAPALPQTSHGCGDEDFKESVIFTSEATISQDNPSNLEIHPAKVKRGRGRPRKSDPNQDDVMDPPVGKPPYKCDTCGYEAALWGRLKRHKESHRNEKPHRCKVCGASYNVEANLTLHMATHNQEQLKCPECQREFSRVASLRSHLMLHEREDNLFCTECGDEFALQYQLDSHVMEHQDEWVSKNVEKIYECQKCQRQFSKASALKEHMRDHVKVKHSLVRRKHDRTQDRSEFSHKCTTCGKVFQKPSQLVRHMRIHTGERPYPCNICGKAFSQKGSLQIHMTKHNGEKPYECDFCSAKFSQKGNLRAHIQRVHSIPQQGTVTFRCSECPCIFRKLGSLNSHMGRAHSQVDNVKALKTETLNSEQIMQVNVNQIMAQIAALETVNSCDETQSTPNIKDQGKEDSVSETAPSTLKHPGPLSVKKPDSSDILQEAISKSGLEGKPELEVSANKATAVTGFITLADKSLDGTVRRYTIRQRKVGGVRWHQCSFCCKEFKKPSDLVRHIRIHTHEKPFKCPHCFRAFSVKSTLTAHIRTHGGLKHYSCPDCNKNFSTTSSLKVHQRLHNGERPFPCSVCNRTFRTSGHRQTHWLQHCDPQSNLSTGSKKRRRKSKKSELQPGENLPDVLLGEPIVITESGLVQTEMIKPDKQPGPRLHSCDQCNASFRKKNHLRNHLRIHSGERPFQCNICSRSFVSNGVLKTHILTHDAVKAFKCEICPTAFSTQGSLKRHQSMHSDSKPFMCPYCHKTFKHKLACKKHIKNHKVEVARAVAQQANELQEQQFVVSVGDSFNGGEIIVPNFQGFSNNALGGSDNLEESVTGTNFKHNITLSNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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