Basic Information

Insect: Frankliniella occidentalis
Gene Symbol: -
Assembly: None
Location: ML763137.1:26918-42044[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 2.1e-05 0.0011 19.1 1.1 1 23 360 382 360 382 0.96

2 22 0.011 0.62 10.5 3.2 1 20 388 407 388 410 0.93

3 22 1.4e-05 0.00077 19.7 1.1 1 23 416 438 416 438 0.99

4 22 1.9e-05 0.001 19.3 2.6 1 21 444 464 444 466 0.94

5 22 2.6e-05 0.0014 18.8 4.4 1 23 472 494 472 494 0.99

6 22 3.3e-05 0.0018 18.5 5.3 1 23 500 522 500 522 0.97

7 22 2.1e-06 0.00011 22.3 4.0 1 23 528 550 528 550 0.97

8 22 2.9e-06 0.00016 21.8 3.5 1 23 556 578 556 578 0.98

9 22 0.00011 0.0059 16.9 7.1 1 23 603 625 603 625 0.96

10 22 0.00052 0.028 14.8 8.4 1 23 631 653 631 653 0.96

11 22 5.7e-05 0.0031 17.8 5.9 1 23 659 681 659 681 0.97

12 22 0.00053 0.028 14.7 4.3 1 23 687 709 687 709 0.98

13 22 5.9e-06 0.00032 20.9 4.6 1 23 715 737 715 737 0.98

14 22 4.6e-06 0.00025 21.2 5.0 1 23 743 765 743 765 0.98

15 22 8.5e-05 0.0046 17.2 5.5 1 23 771 793 771 793 0.97

16 22 1e-05 0.00055 20.1 5.6 1 23 799 821 799 821 0.97

17 22 7.4e-07 4e-05 23.7 2.9 1 23 827 849 827 849 0.98

18 22 1.2e-06 6.7e-05 23.0 2.7 1 23 860 882 860 882 0.97

19 22 9e-07 4.9e-05 23.4 1.3 1 23 888 910 888 910 0.98

20 22 9.8e-06 0.00053 20.2 7.2 1 23 916 938 916 938 0.98

21 22 2.1e-05 0.0012 19.1 6.9 1 23 944 966 944 966 0.98

22 22 9.3e-05 0.005 17.1 0.3 1 23 978 1000 978 1000 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	2.1e-05	0.0011	19.1	1.1	1	23	360	382	360	382	0.96
2	22	0.011	0.62	10.5	3.2	1	20	388	407	388	410	0.93
3	22	1.4e-05	0.00077	19.7	1.1	1	23	416	438	416	438	0.99
4	22	1.9e-05	0.001	19.3	2.6	1	21	444	464	444	466	0.94
5	22	2.6e-05	0.0014	18.8	4.4	1	23	472	494	472	494	0.99
6	22	3.3e-05	0.0018	18.5	5.3	1	23	500	522	500	522	0.97
7	22	2.1e-06	0.00011	22.3	4.0	1	23	528	550	528	550	0.97
8	22	2.9e-06	0.00016	21.8	3.5	1	23	556	578	556	578	0.98
9	22	0.00011	0.0059	16.9	7.1	1	23	603	625	603	625	0.96
10	22	0.00052	0.028	14.8	8.4	1	23	631	653	631	653	0.96
11	22	5.7e-05	0.0031	17.8	5.9	1	23	659	681	659	681	0.97
12	22	0.00053	0.028	14.7	4.3	1	23	687	709	687	709	0.98
13	22	5.9e-06	0.00032	20.9	4.6	1	23	715	737	715	737	0.98
14	22	4.6e-06	0.00025	21.2	5.0	1	23	743	765	743	765	0.98
15	22	8.5e-05	0.0046	17.2	5.5	1	23	771	793	771	793	0.97
16	22	1e-05	0.00055	20.1	5.6	1	23	799	821	799	821	0.97
17	22	7.4e-07	4e-05	23.7	2.9	1	23	827	849	827	849	0.98
18	22	1.2e-06	6.7e-05	23.0	2.7	1	23	860	882	860	882	0.97
19	22	9e-07	4.9e-05	23.4	1.3	1	23	888	910	888	910	0.98
20	22	9.8e-06	0.00053	20.2	7.2	1	23	916	938	916	938	0.98
21	22	2.1e-05	0.0012	19.1	6.9	1	23	944	966	944	966	0.98
22	22	9.3e-05	0.005	17.1	0.3	1	23	978	1000	978	1000	0.98

Sequence Information

Coding Sequence: ATGGGTCCCATTGCTAAGTACTGGGTGCTTACAAACCTATTCCCTGGACAAATCCCACAGTTACCTGGTGGTGTCCCTGCGATTTCGACAGCTTCTGGGGGAGTACCGACACTAAGCCAACCTCAACAGTTGAGCTTAGGTGCTACGACACTACCTCAGCAGCAGTCCCAGTCGCATCAAGCTCCCACTCAACTGACAATACCTGTTCCCCTTGACGCAAGCAAAGACAAGCGGGGAACTGGAGCGAGAGGGTTGCCAAGCCACGCTGCGCATCAACTTTTGGTGCGTAACGCTATGGCCACAACTGACACAACAACAAGCATGCATCCAGTTCAACAAGCTGTAGCTCAGCAACAAGCCGCTCAACAAGCTGCTGCTCAAGCTGTTCAGGCTGCTCAGGCTGCTCAAGTTGTTCAGTCCACTTCAGACGTTGGCACACAAATGGATCAACCTCCGCATTCCGTGCACCCAGCTGCACATCCCGCAGCTCATGTCACAGTGCATGCTGCCCATGCTGCACATGGGTCGGGCCATCCCACAGCCCACCCTGTTGCAGTAGTTCATGTTGCAGCTGGTGCTCAGGCAGTGAGTGCTGCAGACATTAAACATGAAGCCAGTAAGGCTGGTGCTAGTGGTCATAAGGACCAAAGATTAATTATGTCGGGcttCCCTATGCAAGAAATAAAAGGACACATGATGGACCTTAGAACTGTAGATGGAAGCATTCTCAAAATAACTACCCCCAATGGAGAGCAAGAACTTGCTAAAACATTGGGTGTAGAAATGGTTCAAAATATGTATAAAGTCAATGTTGAAGATATTAATCAGCTCTTAGCCTATCATGAAGTGTTTGGTAAACTTCAAAATGAAATGGTAACAGCTGGGCAACCTACCAATTCTACCACTGTCACTACTACTACctcacaaccacaaccacctgcagcagctgctatAACTGCAGCACGGCACGCCGAGCCAGCTGTATTGCAAAATGGTGTAATGGTCAAAACATTAAATGAAGCTGGGGAAGGTGTATCTGGGTCAACCTCCCCTTCAGCACTTGCCTCAGCTGTCACTCATGCTTGTGATGTTTGTGGCAAAATGTTTCCTTTCCGCTATCAACTAATTGTCCATCGCCGTTACCATACAGAACGTAAACCATTCACTTGCCAGgTATGTGGCAAGGCATTCTCATGTGCTGCAGAGCTGACCAGGCATGGAAAATGTCATCTAGGAGGAAGCATGTATACATGTTCCGTGTGTTTCCATGTGTTTGCTAATGCACCATCATTAGAACGGCACATGAAGAGACATTCTACAGAAAAACCTTATGCGTGCCCTGTGTGTGGCAAGTCATTTGCCCGGAAGGAGCATCTAGACAATCACACCAGATGTCACACAGGAGAGACTCCATATCGCTGTCAATACTGTGCAAAATCATTTACTAGAAAAGAACATATGGTTAACCATGTGCGCAAGCACACTGGGGAAACTCCACACCGCTGTGATATTTGCAAGAAATCTTTCACAAGGAAGGAGCACTTCATGAACCATGTCATGTGGCACACTGGTGAAACTCCTCATTCATGTCAGGTCTGTGGTAAGAAGTTCATTCGGAAAGAGCACCTGAATAATCACATGATCTCGCATACGCATGAGACGCCCTTTCGTTGTGAAATCTGCAACAAACAGTTCTCTCGGAAGGAACACTTCACGAATCACATCATGTGGCATTCTGGTATGTATGATCAGCTCATTATTGTTCGCTTGTTCTTGTTTCTGTCCCGCATGGTGGGTGAAACGCCGCACCATTGTGAATACTGCCCCAAGAAATTCTCCCGTAAGGAACACCTATTGATTCACACCCGTCTACACACAGGTGAAACACCGCACCATTGCGAATACTGCCCCAAGAAATTTGCTCGTAAGGAGCATCTTATAATCCATACCAGACATCACACAGGTGAAACTCCACACCATTGCGAATACTGCCCCAAGAAATTCGCTCGTAAGGAACACCTTGTGATCCACACACGGATGCACACAGGTGAAATGCCGTACCACTGTGAATACTGTCCCAAGAAATTTGCTCGTAAGGAGCATCAAATTATCCACACGCGTCTTCACACAGGTGAAATGCCGCACCAGTGTGAATACTGTCCCAAGAAATTCTCTCGTAAGGAACACCTTGTTATTCACACCCGTCTGCACACAGGTGAGATGCCTCATCAGTGCGAATATTGCCCCAAGAAATTTTCTCGTAAGGAACACCTCATTATCCACACGCGTCAACACACAGGTGAAACCCCCCATCGGTGTGAATTCTGCTCAAAAGCCTTCACACGTAAAGAACACCTGTTGAACCACGTTCGTCAGCACACTGGCGAGTCACCACATCGCTGTGGATATTGCTCCAAATCTTTCACTCGGAAAGAACACCTGATCAACCATGTGCGTCAACACACAGGTGAAACTCCATTCCGGTGCCAGTACTGCCCCAAGGCCTTCACACGGAAGGATCATCTGGTCAACCACGTCCGCCAGCACACCGGAGAGACGCCGCACAAGTGCCAGGAGCACCCGTGCAGCTACTGCCCGAAAGTATTCTCGAGAAAAGAGCACCTGGTGATTCACGTGAGGAAGCATACGGGTGAGACCCCGTACCGCTGTCAGTACTGTCCCAAGGCGTTTGCCAGGAAAGACCATCTTGTCATTCATGTGCGCCAGCACACTGGGGAAACTCCACACAAGTGCAAGTATTGCACTAAggcatttacaagaaaagaacACCTAAATAATCATGTCCGACAACACACTGGTGAGTCTCCGCACCGCTGTCAGTTTTGCTCCAAGTCGTTCACTCGCAAGGAGCACCTGACTAACCACGTGCGGATCCACACAGGCGAATCTCCCCATCGATGGGAGCGGCCTTTCGTCTGTGGAGAATGTGGGAAGTCGTTCCCTCTCAAGGGAAATCTTCTTTTCCATCAACGTTCACACAACAAAGGAACAACGGCTGACAGACCCTTCCGGCCGCCTGGATTCCCACCACCGGAGCCCTTGTGGCGGGCACCAGGGTTAGTAGCTGGGGTTCGTCCAGATGGTGTAGAGGGTGAACAGTCTGAGCAATCTCAGCAACCAGGACAATCTCAGGCCCATCCAGCACAATCTCAGTCTCAAGCACAGACTCAAGCACAACCACAGCCACAGGCTCTGTCACAACCACAGCCTGCGCAATCCCAAGCCCCAACTGCCCATGAttag
Protein Sequence: MGPIAKYWVLTNLFPGQIPQLPGGVPAISTASGGVPTLSQPQQLSLGATTLPQQQSQSHQAPTQLTIPVPLDASKDKRGTGARGLPSHAAHQLLVRNAMATTDTTTSMHPVQQAVAQQQAAQQAAAQAVQAAQAAQVVQSTSDVGTQMDQPPHSVHPAAHPAAHVTVHAAHAAHGSGHPTAHPVAVVHVAAGAQAVSAADIKHEASKAGASGHKDQRLIMSGFPMQEIKGHMMDLRTVDGSILKITTPNGEQELAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQNEMVTAGQPTNSTTVTTTTSQPQPPAAAAITAARHAEPAVLQNGVMVKTLNEAGEGVSGSTSPSALASAVTHACDVCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFSCAAELTRHGKCHLGGSMYTCSVCFHVFANAPSLERHMKRHSTEKPYACPVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKSFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHSCQVCGKKFIRKEHLNNHMISHTHETPFRCEICNKQFSRKEHFTNHIMWHSGMYDQLIIVRLFLFLSRMVGETPHHCEYCPKKFSRKEHLLIHTRLHTGETPHHCEYCPKKFARKEHLIIHTRHHTGETPHHCEYCPKKFARKEHLVIHTRMHTGEMPYHCEYCPKKFARKEHQIIHTRLHTGEMPHQCEYCPKKFSRKEHLVIHTRLHTGEMPHQCEYCPKKFSRKEHLIIHTRQHTGETPHRCEFCSKAFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGETPHKCQEHPCSYCPKVFSRKEHLVIHVRKHTGETPYRCQYCPKAFARKDHLVIHVRQHTGETPHKCKYCTKAFTRKEHLNNHVRQHTGESPHRCQFCSKSFTRKEHLTNHVRIHTGESPHRWERPFVCGECGKSFPLKGNLLFHQRSHNKGTTADRPFRPPGFPPPEPLWRAPGLVAGVRPDGVEGEQSEQSQQPGQSQAHPAQSQSQAQTQAQPQPQALSQPQPAQSQAPTAHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -