Focc012025.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- -
- Assembly
- None
- Location
- ML762996.1:457017-458520[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 1.5e-05 24.5 0.0 9 40 25 55 19 59 0.91 2 2 4e-05 0.033 13.8 0.0 1 40 202 241 202 245 0.91
Sequence Information
- Coding Sequence
- ATGGTGTGGCCAGAAGGAATGTTACCAAGATCAAGAAGGCGTCCACATGATCATGCCCTCATTCAACAGTGCCTGCGAGAAGTTTCCAATGGGACATCTGTCAACGCTGTAGCAAAGAGTTTTGGAATTCCTCGAACAACTTTGCTCTACCACATGAAGAGGCATGGTGTACAATCTCCCATTGATCGACATGGGGTTTTTTCATCATGCTTAGTAACAGTGTACATTCAATGTGCTTTGGGATCAGCCACTTCAAGATATGTATTTCATCCAGCACTGCTTTTTCCCAACTGCAGGAGATCGGAGATGCACCAGCAGATGCTCCCCCACGGGGCCCAGCTCGGGGGCTCgcacggcgggggagggctCGGGGGCGCTCACCCGCACGGCATGCACGGCCTGCCCGGGGTGCCCGTCGAGAGCCTGCTCTCGACGCCCACCTTCTCTGCCGGCGACttcgaccacgaccaccaggCCCGGATGAACATGAACATGGGCATGGGCATGATGGGCATGGGCGCCGGTCCCGGGggcccgctcggcggcggcctgggcggcggccccggaggcctCGGCAGCCCGGGCAAGGCGCGCATCCGCCGGTCCGaggagcagctgcggcaggccgCCGACTGCGTCGTGGAGGGCTCCACCTTCCAGACCGTCTCGGACCGCTTCGGCATCCCCATCTCCACCATCAGGTTCTACATGGCCCGCCGGGGGATCctgccccagcggcggcgcggccgctcgagcgccgccggcgccgcctccaacAACCAGAGCGTCAGCGCCGTCAACCCCTTCCACCAGCTGCCCTAG
- Protein Sequence
- MVWPEGMLPRSRRRPHDHALIQQCLREVSNGTSVNAVAKSFGIPRTTLLYHMKRHGVQSPIDRHGVFSSCLVTVYIQCALGSATSRYVFHPALLFPNCRRSEMHQQMLPHGAQLGGSHGGGGLGGAHPHGMHGLPGVPVESLLSTPTFSAGDFDHDHQARMNMNMGMGMMGMGAGPGGPLGGGLGGGPGGLGSPGKARIRRSEEQLRQAADCVVEGSTFQTVSDRFGIPISTIRFYMARRGILPQRRRGRSSAAGAASNNQSVSAVNPFHQLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -