Focc005526.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- bab1
- Assembly
- None
- Location
- ML762974.1:1248166-1271822[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-17 2.6e-14 52.5 0.0 1 43 75 118 75 120 0.94
Sequence Information
- Coding Sequence
- TTGGCATGTTTCACTCATTACTCACGTGCATCTACTACAGTGGAGCATCGTCTAGGTTGCCTTTCCTCTATCTCTACTTATACTTTCCCCTGTGGGGTCTTCTTTTTTCCAGCAGACAGCTACCAGTACCAGCTTCAACACATGTGGCAGAAGTGCTggaacaccaacaccaccatgTCGCACAACCTTCGGTTCCGTGAGCGGGGTCCCCTCAAGTCGTGGCGTCCGGAGACCATGGCGGAAGCCATCTTCAGCGTCCTCCGGGAGGGGCTGTCCCTCTCCCAGGCGGCGCGCAAGTACGACATCCCCTACCCGACCTTCGTGCTGTACGCCAACCGCGTCCACAACATGCTGGGACCGTCGGTGGACGGCGGAGCAGCGGACCTCAGGCccaagggccgcggccggccgcagcgcatCCTGCTGGGCATCTGGCCGGAGGACCACATCTACGGCGTCATCAGGGCGGTCGTCTTCCGGGACCCGCAGCACCTCGTCAAGGACGACTCGCACTTATCGTACTCGCGGATGTCGGGACAGATGCAGAATTACAACATGAACGCCAACATCTGCGCCAATGGGCCCGACCAGAACGTGACCCCCAACGCCGCCACCATGGCCGCCATGGCGCAGGGCCTTCGGCAGCAGATGTGCAACATGGTGGCTGcagccgctcagcagcagcaacaacaacaacaacaacagcagcagcagcagcaacagcaaccgcAACATTCCCAACAACAACCGCAACAGCAagcgcagcaacaacagcattCTCAACAACAGCAACATTCTCTTCAtctacaacagcagcaacagcagcaccacatgcaacaacagcagcacctTCATtctcaacagcagcaacaacaacaacaacagcagcaacagcaacaacagcaacagcagcatccCCTACAGCACCTGAGCAGCTTGGAGGCCATGGGCGCGCTGAGCTTGGTGACACATTGCGGGAACATACAGCGTTCGAACgggagcgggcagggcgggcagggccagggtggAGGCCCCGGCATCGGACCCAGCTCCACTCTCAACTGTGCGATGGGCCTTTCGAGTCCGCTGGGTCTGCGGCGCTCCCACAGTCCTGTGGCGGGACTTGGCGTGCTCCAGGGCCTGCAAGGGCTCGGCCAAGGCCAGGGGCACGACGTCCTGGAACAAGTACTAAGTGGGCGAGGGGCAGGACTGTCGGCCCTGACCCTCCCGGCCCTCTCTTCGAGACCAATTGGCCCTTTGGGCTCACCTCCAGGCCAGCCCCAAGCTCAGCCCGCGGACCTCCAGGACTTGCGAGTTGCCAGCCCCGTGGGTGGGTCCATGGGTGGGACCATTGGTGGAGCCAGCCTCAAGCCGGACAGGGACCGGATGGATAGGCGGGGGGctgaggaggcggagcgggtggaCCGCGTGTGTGATGCAGGGGACAGGGATAGAGACAGGAGAAAGCTGGATGACAGGATGAGGAAAAACGCCAGAGAGGACGATGGCGTGGGTGATGTTGGGGGTGACGGTGTGGACCAAGAGGAGGACGACCTCCGCATTGCTCGGGATTTTCTCAACTCTGCTAACAACAACGACATCATGACCAACAACAACATGGGCCTGCTCAAAGCGGGGCCGTTATTTCCGGACGAGATAATGGAGATGACCAACCGTTCAAACCTAGAACTGCTCAACGAAACAGCTGAGAACGTGGTCGTCAAGTGCGAGCCTCTATTGTCAAGCCGTCCTCACTCCCACAGCTAG
- Protein Sequence
- LACFTHYSRASTTVEHRLGCLSSISTYTFPCGVFFFPADSYQYQLQHMWQKCWNTNTTMSHNLRFRERGPLKSWRPETMAEAIFSVLREGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSVDGGAADLRPKGRGRPQRILLGIWPEDHIYGVIRAVVFRDPQHLVKDDSHLSYSRMSGQMQNYNMNANICANGPDQNVTPNAATMAAMAQGLRQQMCNMVAAAAQQQQQQQQQQQQQQQQQPQHSQQQPQQQAQQQQHSQQQQHSLHLQQQQQQHHMQQQQHLHSQQQQQQQQQQQQQQQQQQHPLQHLSSLEAMGALSLVTHCGNIQRSNGSGQGGQGQGGGPGIGPSSTLNCAMGLSSPLGLRRSHSPVAGLGVLQGLQGLGQGQGHDVLEQVLSGRGAGLSALTLPALSSRPIGPLGSPPGQPQAQPADLQDLRVASPVGGSMGGTIGGASLKPDRDRMDRRGAEEAERVDRVCDAGDRDRDRRKLDDRMRKNAREDDGVGDVGGDGVDQEEDDLRIARDFLNSANNNDIMTNNNMGLLKAGPLFPDEIMEMTNRSNLELLNETAENVVVKCEPLLSSRPHSHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732564;
- 90% Identity
- -
- 80% Identity
- -