Focc000266.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- ttk
- Assembly
- None
- Location
- ML762985.1:2134304-2139180[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-05 0.017 14.7 0.1 2 41 198 237 197 239 0.85 2 4 3.7e-11 3e-08 33.1 0.1 3 39 249 284 247 290 0.87 3 4 0.0069 5.7 6.6 0.0 6 35 305 333 301 342 0.81 4 4 2.7e-12 2.2e-09 36.8 0.1 3 38 364 399 362 404 0.89
Sequence Information
- Coding Sequence
- TATTTTTTACAGGAAATCTTCACAAATTCTGATGATAGTCACCCTATTGTGATTTTGACTGATGTAGAATCTAACATCCTACGTAGTATTTTGGATTTTGTTTACCATGGTGAACTGAATGTACAGGCATCACAGTTGACTGAAGTCCTACAAGTTGCCACAACTTTACAAATTCGTGGACTGACAGAGGTTAGTGATCAACTGCCTCTCCTAGTTCCACCCGATAGTACAAGATTGGTAACTGATGAGTCGTGTGAACCTTGTGAGGAACTGGTGATACCACAGCAAGATATTACTTCTAATGAGGACGAAGTTGCTCCACACAGTTCTGAGGCTAACGCTCTGACAGCAAATATCATAGAAAATGAGAATGCTGAATCTCACGAGGAGCAGAGCAACAGTGATTGCAATATTACACCAAAAAATCATACTGAGGATCAAGGGCTGGCTGACTCAATGCCCGATTCCCATGATGAAAACTTTACTGGGAATGAGAATTATGAAAGTGAGGCTACCATCCCTGAAGCTATTATCCCAGAACAGGACcgtagaaaaagaaaacgtcgGGAAAGCTGCAGAAAGGAATATAGTGAAGAACAGCTTGCTGCTGCTTTAAAGGATTTAAGATGTGGGCAACTTTTAGGAGATACTGCCTTAGCTCATAATATACCAAGATCAACCTTATATGTTAGAGCTAAATCTGAAGGTATTCCCATAACTGTAACAAGGCAAGAACATTCAGGTGAAAATGTGAATGCAGCTGTCCAAGCAGTTAATGGAGGAGCAAGCCTTCAGCAAGCAGCAGATATGTATCAAATTCCTAAAACAGTCTTATGGCGAAGAGTGAAAGCTGCTGGCGCATTTTCTAACCGTGCCCAATCCAGACGTCAAAGTTACGGTCCTGCACACTGGCAAGCAGCTGTTCAGGCATTACAGGATGGTCAAAACCTTTCTAGAGTTTCAGCCCAATTCCAGatcCCCAAGACAACTCTATTCCGTGAGAAAGTACGATTAATAGAAGCAGGAAAATTGCCATATCCGCCTCCTCCCTCTAAGAAAAGAGCCCCACAAACTCAACTTATGAAGCAAACTCAGCTCAAGGCTGCAGTGGCTGCATGCAAAGAAGGAAGAATGTCTCAGGCAGAGGCATCAATTACTTATCAGGTTCCTAAAACAACTATTTGGAGGAGATTGCACAAAGGAAACATACAAAATCCAGATGAAAACAAAGATATTGTAAGATCAGTGGAAATTACCGATGCAACAGCTGAAGAACAACCTGGAGCTGTTGCTGGAACACTTCAAGAGCATGCACAGTTTACTTTTATTGAGGTTGTAGAAGAAGACTTCTCCACTGCCTCTCTAATCATGTGA
- Protein Sequence
- YFLQEIFTNSDDSHPIVILTDVESNILRSILDFVYHGELNVQASQLTEVLQVATTLQIRGLTEVSDQLPLLVPPDSTRLVTDESCEPCEELVIPQQDITSNEDEVAPHSSEANALTANIIENENAESHEEQSNSDCNITPKNHTEDQGLADSMPDSHDENFTGNENYESEATIPEAIIPEQDRRKRKRRESCRKEYSEEQLAAALKDLRCGQLLGDTALAHNIPRSTLYVRAKSEGIPITVTRQEHSGENVNAAVQAVNGGASLQQAADMYQIPKTVLWRRVKAAGAFSNRAQSRRQSYGPAHWQAAVQALQDGQNLSRVSAQFQIPKTTLFREKVRLIEAGKLPYPPPPSKKRAPQTQLMKQTQLKAAVAACKEGRMSQAEASITYQVPKTTIWRRLHKGNIQNPDENKDIVRSVEITDATAEEQPGAVAGTLQEHAQFTFIEVVEEDFSTASLIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733305;
- 90% Identity
- iTF_00733305;
- 80% Identity
- iTF_00733305;