Focc008616.1
Basic Information
- Insect
- Frankliniella occidentalis
- Gene Symbol
- bab2
- Assembly
- None
- Location
- ML763012.1:1786552-1790053[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-12 6.2e-09 35.3 0.0 1 39 496 535 496 539 0.90 2 4 1.1e-13 9.1e-11 41.2 0.1 1 39 550 588 550 591 0.94 3 4 1.5e-18 1.3e-15 56.7 0.0 2 45 606 650 605 650 0.97 4 4 1.8e-19 1.5e-16 59.7 0.0 1 43 657 700 657 701 0.97
Sequence Information
- Coding Sequence
- ATGTGCGGACCAGCAGTAGACATCACCTCAGCCATGGCAGGGCAGCACTATTGTTTAAGGTGGAACAACTATCAGTCAAATATGACCTCAGTGTTTCACCAGTTACTGCAAACTGAAGCATTTGTTGATGTCACCCTCTCTTGTAATGAAGCCTCTCTGAAAGCTCATAAAGTTGTGCTGTCAGCATGTTCCTCATATTTTCAAAAGCTACTTTTAGAGAATCCATGTAAACATCCAACAATCATTATGCCTCCAGATGTGTGTTTTAATGATCTTAAGTTTATAATTGAATTTGTGTACCGAGGGGAAATAGATGTGTCTCAGGCAGAGTTGCAGAGTCTTCTTAAGACAGCTGATCAGTTGAAGATAAAGGGCCTATGTGAACTTCCagagggaagagaaggaggTGTAGTTATTCCCTCAGCCCAAGTAACACCACTACCACCCAATGCTCGGAGACGTACAATAACAAAATTTCGACGCATTGCTGGTCACAAAGGACGACGGTTTGAACCTAGAGGTCGACCACCTATGTATAGAGGAACTGCAACTGTGAAACAAGAACAACCCCAACCCTCCCCTCAGCACCATCAGCAacaccatcaacaacaacagcagcaacaacagcatcaacagcagcagcaagttcttcagcagcaacaacaaatgcAACATCAACAGCACCAGCAACATCAAATGCATCCTCAAACTCACCTTCAACCAAATGCTGGTCACATACAGGTGGCTAATGGGATGACTGTCAATGTTGGCATGACAGTGGCTACATCTACCGATGAAGAGCGCAGTGGTGGAGGTCATATGGCCACAGGTGATATTCCTGTTGTTATCCTTGAAAGCCGTCCCCACTCCCATGGGCATACTGGCCAGCCACAAATGCATCCACACCTTCAGCATCATCAGTTAACAACAGCAgtttcCCCTGTCCTCCTTTCTCATCAAGGTCACTTACAACAGCATGGTCTTTCACTTCCACCACCTCAGCCTCAGCAAATGGAACAGCATAATTCACATTCAGTTCATTCAGGTCACTCTGCTCATTCAGCTCACAGCAATAGTGCCAGTGATGTTGAAATGCCTCCAGAAGTCACTCCACCAGCCCCCTCTGCAACCCCTGTTCCTCTTATGGCCATCCATGAAGATTCCATACCCAGAAGTAGAGATATGGCAGTGGATACGTCAGGAATAGCTCACAATACTGAAGACGAAAATGTTAAAGTTAAGTTTGAAACCCTTCGAGCCATGGAGCAGGGAGATACTATAAATATGGATAGTCATATGACTGATCGAcaacagcaacaacagaaCATGGGTGAGGATGATCATACAATGCACACTATGATGATAACCCCAGAACTTCTTGGTCTGATACCATCTTCTTCTGGTCATTCAACTGATTCCACAGCTCCTTCGCCAGCTGATGGTCAACCCGAGCAACCAAAAGGCCCAGGGGGACCAAAGACATGGACACAAGAAGATATGGATGCAGCACTGGATGCTTTGCGCACGCAAAATATTTCACTAACCAAAGCAGCTACCATGTTTGGCATTCCCTCGACTACATTGTGGCAAAGGGCACATCGTCTTGGTATCGACACACCGAAGAAAGAAGGTCCCAACAAGTCTTGGTCTGAAGATAACTTGAATAATGCCCTTGAGGCGCTCAGAAGTGGATCTATATCTGCCAATAAAGCCAGTAAAGCTTATGgTATTCCTAGCAGTACTTTGTATAAAATTGCTCGGAGAGAAGGCATCAGATTAGCAGCACCTTTTAATGCCGCCCCAACAACTTGGAACCCTGACGATTTGGAAAGAGCTCTGGAATCTATCAGATCAGGTCAAACTTCTGTTCAAAGGGCAGCTGCTGAATTTGGAATTCCCACTGGTACATTGTATGGACGATGCAAGCGTGAGGGTATAGAACTCTCTAGAAGTACTCCCACTCCCTGGTCAGAAGATGCAATGCTGGAAGCTCTGGAGTCAGTGAGAGTAGGTCAAATGAGCATCAATCAAGCAGCCATCCATTACAATCTACCTTACTCTTCACTTTATGGTCGTTTTAAACGTGGAAAGTATGAAGCAGACCATCCAAGCGGAGATGAATCCATGGACGCCCCAGTTTCTCCCAACATTCAGCCTCAAATCATGGTTCTACCTTACTCTGTCAGTGTGAGTTATCAGATTACAATAGGTTGCATTTAG
- Protein Sequence
- MCGPAVDITSAMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLSCNEASLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPPDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCELPEGREGGVVIPSAQVTPLPPNARRRTITKFRRIAGHKGRRFEPRGRPPMYRGTATVKQEQPQPSPQHHQQHHQQQQQQQQHQQQQQVLQQQQQMQHQQHQQHQMHPQTHLQPNAGHIQVANGMTVNVGMTVATSTDEERSGGGHMATGDIPVVILESRPHSHGHTGQPQMHPHLQHHQLTTAVSPVLLSHQGHLQQHGLSLPPPQPQQMEQHNSHSVHSGHSAHSAHSNSASDVEMPPEVTPPAPSATPVPLMAIHEDSIPRSRDMAVDTSGIAHNTEDENVKVKFETLRAMEQGDTINMDSHMTDRQQQQQNMGEDDHTMHTMMITPELLGLIPSSSGHSTDSTAPSPADGQPEQPKGPGGPKTWTQEDMDAALDALRTQNISLTKAATMFGIPSTTLWQRAHRLGIDTPKKEGPNKSWSEDNLNNALEALRSGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPDDLERALESIRSGQTSVQRAAAEFGIPTGTLYGRCKREGIELSRSTPTPWSEDAMLEALESVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEADHPSGDESMDAPVSPNIQPQIMVLPYSVSVSYQITIGCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733267;
- 90% Identity
- iTF_00733267;
- 80% Identity
- iTF_00733267;