Fint003842.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- pnr
- Assembly
- GCA_033675135.1
- Location
- CM066253.1:1979887-1984424[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 2.5e-14 51.5 3.2 1 34 187 219 187 221 0.97 2 2 3.5e-19 7.5e-16 56.4 6.2 1 35 244 277 244 278 0.98
Sequence Information
- Coding Sequence
- ATGGGGGCGGCCCGGCACATGACCATCATGTTCCAGACCAGTTGTGCCGTCAACTCAGACATGTACCCCGAGTCAACGTCAACCGGTACAACTGGATACcttcaacaacaacagcaacaatcGTCGtcgcaacagcagcaagcgCAAACTCAACATCAGCAAAACCACCATCAACATCAGcagcaccatcaccaccaACACActcagcaccaccaccaccaccagcagcaggaacagcagccgcagcaccagcaTGAGCAACAAGACCACCAACAGCCCGTGTACGTGCcctcggcgcgggcggtgcTGCCCCCGCAGTACTcgtcggccagcgcggccgcggcgggcgcgtgggggtcctcgtggggcgggcccggccaccaGTCGGCTGTGAGCCACGAGGGCTACGTGTCGCAGTACCCCCACCAcgcggcccaccacgccctctaCGCCCAGAACATGATGATGAGCCCGTGGCGGGCCTACGACGGCGCCGCCTtccagcgcgcctcgccctacGATGGCACCATGGACTTCCAGTTCGGCGAGGGCCGCGAGTGCGTCAACTGCGGCGCCGTGTCCACCCCGCtgtggcggcgcgacggcacCGGCCACTACCTGTGCAACGCGTGCGGCCTCTACCACAAGATGAACGGCATGAACCGGCCGCTCGTCAAGCCCTCCAAGAGACTGGTCAACGAGACGGCCACGAGGCGCCTGGGGCTGTGCTGCACAAACTGCGGCACGCGCACCACGACGCTGTGGCGGCGCAACAACGAGGGCGAGCCCGTGTGCAACGCGTGCGGCCTGTACTTCAAGCTGCACGGCGTCAACCGGCCCATCAGCATGCGCAAGGACGGCATCCAGACGCGCAAGCGCAAGCCCAAGAAGCAGCAggggtccgcccccgcccccgcccccgccgcctccatcaccgccgcctccgccgccccctcgccgctGTCCTCGTCCAGCGACACCAAGCACTCGTCCGGGGCCGGCGACAAGCAGGCCGCATCGCCCGACCAAGGCAAGAAGCGGTctgagggcgcgggcgcactgTCCGCCATGTATCAGGCGCACGCCCACCACCTCGTCAAGACGgagccgctggcgctgggcggcgggctgggcggcaccCTGGGCTCCCTGGGCCACCTGGGCTCTCTCGCCCCCGGggtgggcgtcggcgtcggctaCCCGGGCTCTCACGGCCCCTTCACTGCCGCGCAGCAGTTCGGCCTCCccagccaccaccacgcctcgGCTTCGTCCTCGCCCCCGGGGACGCTCACTGCCGACTaccctcaccaccaccatcaccaccaccatagTCATCACCACAGCAAGCTCATGGCGTCCTcatag
- Protein Sequence
- MGAARHMTIMFQTSCAVNSDMYPESTSTGTTGYLQQQQQQSSSQQQQAQTQHQQNHHQHQQHHHHQHTQHHHHHQQQEQQPQHQHEQQDHQQPVYVPSARAVLPPQYSSASAAAAGAWGSSWGGPGHQSAVSHEGYVSQYPHHAAHHALYAQNMMMSPWRAYDGAAFQRASPYDGTMDFQFGEGRECVNCGAVSTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKPSKRLVNETATRRLGLCCTNCGTRTTTLWRRNNEGEPVCNACGLYFKLHGVNRPISMRKDGIQTRKRKPKKQQGSAPAPAPAASITAASAAPSPLSSSSDTKHSSGAGDKQAASPDQGKKRSEGAGALSAMYQAHAHHLVKTEPLALGGGLGGTLGSLGHLGSLAPGVGVGVGYPGSHGPFTAAQQFGLPSHHHASASSSPPGTLTADYPHHHHHHHHSHHHSKLMASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -