Fint001145.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- grn
- Assembly
- GCA_033675135.1
- Location
- CM066247.1:1675788-1740473[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-19 3.1e-16 57.6 4.7 1 35 471 504 471 505 0.98 2 2 5e-19 1.1e-15 55.9 7.5 1 35 528 561 528 562 0.97
Sequence Information
- Coding Sequence
- ATGGACATGGCGGCGAGCGAGCACCACTcccaccacccgcaccaccgGTGGTACGAGGCCCCTCGGCTTGCCATGAACCAGTCCCCGTcccaccacctccccgccaTGGTGGCGGAGGACCTGCTCGCCGGCAACGGCGGCCTCAACGCCTCGCCCGGCGACCTCCTCGGccagcaccagggcggcggccaccccaACCAGGAGATGTCCGGCTCGAGCATGGCCGAGCACATGTCCTTCTTCCACCActcggcggccgcctccctggcggcggcggccgcggcggacggcTCGGCCTCCGccaacggccggccgggcgactaCTCGCACcagcgggcggccgccgccgcgcgctacTACCACACCCAGATGCACTCCCCCTACGCGTCGGCCGCGACCCATGcggcggcgcggatgTCAGGCTCGCAGATGTGCAGGCCGCACCACTTCCCCCCGTCACCGCTCCACCCCTGGCTGTCGTCGGCGGACGCGGCGTCATCGCCGTCCAAGCCGGCGgggtcgtcgtcctcgtcgtcgtggtgCAACCCCTTCAGCTCGTCGTCAAACAGCGAGCAGCACAACAACCCCAGCACGACCCCCACCAACAACCCCTCCACAACGCCCACCAACTCCtccaataacaacaacaataataataatagtactaGTAATAACAATAACCggacagagcagagcgaggaCCAGAAGCCCTCGTCGCCGTCGGTGAGCAGTCACCACGTCCCCCAGCACCATCACCTCTTCTCCTTCCCCCCGACGCCGCCCAAGGACGCGACGCCCGACTcggtgacggcggcgtccACCGCGGCGTCGACGTCGGCGTCCAACGACTACAAcgcggcggtcgcggcgcacgcggccgccaTGGGCGCCGCCTTCATGCAGCACCAGGACGtgtcggggtgcggcgtgggcggcgtcgcgggcgtcGTCGGCCAGCTCGACGTGAAGCCGTCCATGCTCGGCTCGAGCTGCTCCAATGCCGCCTCGTCGTCCAACAAGCAGCGCGAAGGTACGGCCTCCTCCAccagtaacaacaacaacacctcGTCGAGTTCCGCCTTCAGCTGTTCGTCGGCGGCCACGTCCCCCGTGGACGACCCCGCGCCCTCGTCGTCCCCGAGCAGAAGACAGGAGCAGGACTGCatggaccagcagcagcagcagcagcagcacatgcAGGACGCCTCGGGTCactaccctccccctcccctgcagtaCGGCGGCCAGAGTAGCGGCTACATGGGTTACCCTCACCACCTCAACCACCACATGTTCGGCACAAAGACGTCGCCCAGCCCCCTCGGGGGCCTCGGGGGCTCCAAAGTGTCGTCCAGAAATAAGTCGCGATCGAGCGCGGGTCAGGTCCCCCTCAGCTCAGAGGGTCGCGAGTGCGTCAACTGCGGCGCGACGTCGACGCCGctgtggcgccgcgacggcacCGGCCACTACCTGTGCAACGCGTGCGGCCTGTACTACAAGATGAACGGCCAGAACCGGCCGCTCATCAAGCCCAAGCGACGACTGTCGCTGCagtcggccgcgcgccgcgcgggcaccTCCTGCGCCAACTGCAAgaccacgacgacgacccTGTGGCGCCGGAACCAGAACGGGGAGCCCGTGTGCAACGCGTGCGGACTCTACTACAAACTGCATAACGTAAACCGACCAATGACGATGAAGAAGGAGGGCATCCAGACCCGGAACCGCAAGCTGTCGTCCAAgtccaagaagaagaagggcggcggcggcggctgcctcAGCCTGTCGGGCGTCATGTCCGAGATGATGAAGCCGCTGGACCCCAGCGGCAAGGGCGTCGGCGGCTACCCCGGCTCCTTCAACAccaacccccaccaccacctgggcgcggcggctctgcACCCGGcggcgcaccacgccgcggccgccatgaGCCACTGGTACCACGGCTCCAAcgtgcaccaccaccagAGCTtcgtggcgcccgcgcccgcgccgcacggagggctcggggcggggcacccgcaccccggcgcgccctccatgcaccaccaccaccatatGAACCCGCTGTCCGCGCTGGGCTCGGGGTCCCTGGGACTGGCGGCCACCTCCAACTCGATGGCGAGCTGGCGGTCCGAGTACACGTGA
- Protein Sequence
- MDMAASEHHSHHPHHRWYEAPRLAMNQSPSHHLPAMVAEDLLAGNGGLNASPGDLLGQHQGGGHPNQEMSGSSMAEHMSFFHHSAAASLAAAAAADGSASANGRPGDYSHQRAAAAARYYHTQMHSPYASAATHAAARMSGSQMCRPHHFPPSPLHPWLSSADAASSPSKPAGSSSSSSWCNPFSSSSNSEQHNNPSTTPTNNPSTTPTNSSNNNNNNNNSTSNNNNRTEQSEDQKPSSPSVSSHHVPQHHHLFSFPPTPPKDATPDSVTAASTAASTSASNDYNAAVAAHAAAMGAAFMQHQDVSGCGVGGVAGVVGQLDVKPSMLGSSCSNAASSSNKQREGTASSTSNNNNTSSSSAFSCSSAATSPVDDPAPSSSPSRRQEQDCMDQQQQQQQHMQDASGHYPPPPLQYGGQSSGYMGYPHHLNHHMFGTKTSPSPLGGLGGSKVSSRNKSRSSAGQVPLSSEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLSLQSAARRAGTSCANCKTTTTTLWRRNQNGEPVCNACGLYYKLHNVNRPMTMKKEGIQTRNRKLSSKSKKKKGGGGGCLSLSGVMSEMMKPLDPSGKGVGGYPGSFNTNPHHHLGAAALHPAAHHAAAAMSHWYHGSNVHHHQSFVAPAPAPHGGLGAGHPHPGAPSMHHHHHMNPLSALGSGSLGLAATSNSMASWRSEYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01435728;
- 90% Identity
- iTF_00733672;
- 80% Identity
- -