Basic Information

Insect: Frankliniella intonsa
Gene Symbol: -
Assembly: GCA_033675135.1
Location: CM066250.1:11405087-11425646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.1 65 3.3 0.3 1 20 307 326 307 328 0.86

2 16 0.53 33 4.2 0.0 5 23 356 374 352 374 0.89

3 16 0.0095 0.58 9.7 0.8 1 23 408 430 408 430 0.98

4 16 1.4e-06 8.7e-05 21.7 1.1 1 23 436 459 436 459 0.97

5 16 0.09 5.5 6.6 0.9 1 20 464 483 464 487 0.89

6 16 0.024 1.5 8.4 0.4 2 22 491 513 490 515 0.88

7 16 0.019 1.2 8.7 0.0 1 23 551 574 551 574 0.93

8 16 7e-06 0.00043 19.6 0.1 3 23 584 604 583 604 0.97

9 16 2.1e-05 0.0013 18.1 0.2 1 23 610 633 610 633 0.94

10 16 2.5e-07 1.5e-05 24.1 0.4 1 23 639 662 639 662 0.97

11 16 0.0093 0.57 9.7 3.0 3 23 671 692 669 692 0.94

12 16 0.0016 0.097 12.1 3.1 1 23 698 721 698 721 0.91

13 16 0.00054 0.033 13.6 1.9 1 23 727 749 727 750 0.95

14 16 0.0014 0.087 12.3 2.1 1 23 755 777 755 777 0.97

15 16 6e-05 0.0037 16.6 3.2 1 22 783 804 783 804 0.96

16 16 2.2e-05 0.0014 18.0 2.3 1 23 811 834 811 834 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.1	65	3.3	0.3	1	20	307	326	307	328	0.86
2	16	0.53	33	4.2	0.0	5	23	356	374	352	374	0.89
3	16	0.0095	0.58	9.7	0.8	1	23	408	430	408	430	0.98
4	16	1.4e-06	8.7e-05	21.7	1.1	1	23	436	459	436	459	0.97
5	16	0.09	5.5	6.6	0.9	1	20	464	483	464	487	0.89
6	16	0.024	1.5	8.4	0.4	2	22	491	513	490	515	0.88
7	16	0.019	1.2	8.7	0.0	1	23	551	574	551	574	0.93
8	16	7e-06	0.00043	19.6	0.1	3	23	584	604	583	604	0.97
9	16	2.1e-05	0.0013	18.1	0.2	1	23	610	633	610	633	0.94
10	16	2.5e-07	1.5e-05	24.1	0.4	1	23	639	662	639	662	0.97
11	16	0.0093	0.57	9.7	3.0	3	23	671	692	669	692	0.94
12	16	0.0016	0.097	12.1	3.1	1	23	698	721	698	721	0.91
13	16	0.00054	0.033	13.6	1.9	1	23	727	749	727	750	0.95
14	16	0.0014	0.087	12.3	2.1	1	23	755	777	755	777	0.97
15	16	6e-05	0.0037	16.6	3.2	1	22	783	804	783	804	0.96
16	16	2.2e-05	0.0014	18.0	2.3	1	23	811	834	811	834	0.97

Sequence Information

Coding Sequence: AtgctctccagctccagacGACGCCTGCTCTGCGCAGCCCTGGCGCTGCACGCTGTGGTCGCCAGTGTCGGTGTCGCGGAGGCCGTGGGCATTTCAGAtttggtgtggtggggtgcggaCATGCTGGCGGGCTCCGGGCAcgacggcgagcagcgggaCGGCTCCGAGAGCgctgccgcgggggccgcgggggccgcggggggcacggcggggccgcgccgcacctgccactgctccggcccggcctgcatgtGCTGCCTGGACTTCAACATGACGTACATCGACCTGGGCGGACCCGGTTGCGTGCGTCTCCGCTACCTCGGACAGGACGCGGGGGTGGCCATGAACGTGTCGTACGGCGACTCCCTGCTGCACAGCGAGGTGGTGAAAGACTCGAGCCCGTCGCAGACGTGCATGGACATCCTGTCCTCGCTGGCgcaggtgtgcgcgcgcttCAGCTCGCTGGAGCCCATGACCgctgagggcgcgggcgcggcaggcgaggctgctgagggcgaggcggcggtgaaGCGCGGCTGCCTGCAGCTGGAGCCCAACCTGCTGGGCGAGGTGCAGGCCTCGTACCCGGTGGGCTGCTTCAGGATGACGCCCACCTCCATGACCCTGGAGCCgcagtccgccgcgccgcccgccaccaccagccagccggaggaggccgagggggGGGTGACCACCGAGGCTCCGTCCACCGTCCCCACGGACCTGAGCGCCGAGTCGCTGATCGCCGCCGTCAGTGAGACGGCCGAACAAGGAATAGACCTGCTCACCAATTGGCTGGGGCTCGCGCTCGAGGAGGACAACAACTCCACCACGACCGACCAGGAGGCGAcgtccaccgccgccccggaggCAGCCGCAGGGGCGCGGAAGGAGCACATCTGCCCCTCACAGCTATCCTTCCAGTGCCACATGTGCCGCGGGCCTTTCAAGGCCGGACGCGACTACTGGAACCACCTGATCCGCGCCTCCAAGCGGCACGCCTCGATGgcgtccccgcgggccccggcaccgcgctcgcgggcgcgctggtggtgcggctgggcgcgctgcgccgagcgCTTCCCCTCCGAGGCCGAGCTgctggcgcacgcgcgcctccACCTGCCCTCGCACGTGCAGCTCATGTGCGGCGTGTGCATGCTCGTGCTGCGCACGACGGACGCCAAGATCGTGCACATGGAGCGGCACGACGCGGGCGTGTACGAGTGCGGCGTCTGCCGGCACGCCTGCGGCGACCGCGAGGCGCTCCGCCAGCACTGGGACACGCACGCCCGCGagcgcccgcaccgctgcgACACCTGCGGCTGGCGCTTCGCCACCTCCTCGGCGCTTCAGGTGCACGTGCGCAAGTTCCACGAGGGCGGGCCCTTCTGCTGCGCCAAGTGCCCCCAGAAGTTCGACGACCGGACCGAGGTGCGCATCCacttcggcgcggcgcacggcaagATGCGGtgccccaggccgggctgctcgTACCGCTGCGCCAACAAGGCCTCGCTGGAGCGCCACGGGACGCTTGCCCACCGGGCGGACGCCGcggacggcgaggacgacgaccaCGACCTGGAcgaccctgcgccgcccccgccgccgcccccaccgcccccggcggacgacgaggccgcggagcacgcgtgcgcggcgtgcggccagGCCTTCCCCCTgtggcgcgccctgctcgcgcacgcccgcagcgcgcacgccgaggcgccgccgcccaccgtcGCCTGCCCGGACTGCGGCAAGGCGTTCCGCTCCCCGCGGGACATGGCGGAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTTCATCTGCGccgagtgcggcatgaccttCAAGCGGGCGCAGAACCTCGAGTACCACACCAAGGGCGCGCACAAGAACGAGCGGAACTTCGTGTGCCCCGAGTGCGGCAAGCGGTTCATCTCCAACGCCGACATGAAGCGCCACCTCCGCTACAACCACCAGAACGGCATGAAGACTCACCTGTGCCCCGAGTGCGGCCACAAGCTCACCAGCCTGTACAAGCTCAAGATGCACGTGCAGTCCCGGCACACGGGCGAGCGGCCGCACAAGTGCCACCTGTGCGACATGGGCTTCGTGGCCAGCTCGGACCTCAAGAAGCACGTCACGTTCAAGCACCGCAAGGAGCACCCGTTCGCGTGCGGCGACTGCGACAAGCGgtaccagcggcggcgcgacctGGACGTGCACCGGCTGCGGCACCACGCCGGCGCCCAGCACCgctgccccacctgcagcaAGGACTTTGACTCGTACGCGTCCATGACGCAGCACGCGCGCTACCACACCACCGAGGAGCCCTTCCAGTGCGCCAAGTGCGGCCGGCGCTTCCCGCACCGCATGAACCTGAGCCGCCACCTGTGCACGCCCGACATCAAGAAGAGCTACCACTGCGCCTCCTGCGGCCTCAGCTTCACCACCAGCGGCAGCCTCAAGTCGCACCGCCGGAGGCTGCACGCCGCGGACCAGGGCGTGgagcaggccccggccgctgccaaggaggccgaggccgaggcaccgcaggaggccgtggtggaggccgtgcagGTGTCCCTCtcccagccggagccggaggcaGCCGCGCAGCTCCCACACCATCACCAGGATCTGGACCACCAGCTGCACAATCCGACTGTGGCTACCCAAGATGAGCAGTACCAGCATCACCTCCAGCAGGCTGTAGAGCAGCAGGCgccagcgcggcagcagcaccaccaccagcaccagcaccatgAGCCGATGCACCACTTAGATCAGGGCGCCGTCGGCCAGGCCTGGGGatgcgggccgccgccagggccgccgccggggccgcccgccccgggcacgaCGCCTGCCCTAGCGGGTCAAGAGGCCATCCTGGCGCTGACGAGGTGCTCGACCTACACCGATCCGgaggccgctgcgccgcaggccgcccccagcatgcacctgctcgccgcccccgagctgcacacgcccgcccccgcccccgcgctgaggtacgaggcgcccccgccgcctccgccacccaCCGCGACGCTGGTGGTCAAGtcggaggcgccgcccccgctcgtgTCACTCCACGTCAAGGCCGCGACGCACCACCCCCACATGATGTacgggcctgccgcccccacggggcccgcgtccacgccccccgccgtcaAGCTCGTGTCTGTGAGCCAGCCCCCGCCACTGACCAGCATCACCTCGCCGTCaccctcgggggcgggcgcgggcggcctcaTCCTGGGCGCGCCCATCCAGACCACCGCTGACGGCTCCTTCCACCTGGTGTTCgtaccgcacggcgcgcccgccccgggcccgggctgcggcaAGTAG
Protein Sequence: MLSSSRRRLLCAALALHAVVASVGVAEAVGISDLVWWGADMLAGSGHDGEQRDGSESAAAGAAGAAGGTAGPRRTCHCSGPACMCCLDFNMTYIDLGGPGCVRLRYLGQDAGVAMNVSYGDSLLHSEVVKDSSPSQTCMDILSSLAQVCARFSSLEPMTAEGAGAAGEAAEGEAAVKRGCLQLEPNLLGEVQASYPVGCFRMTPTSMTLEPQSAAPPATTSQPEEAEGGVTTEAPSTVPTDLSAESLIAAVSETAEQGIDLLTNWLGLALEEDNNSTTTDQEATSTAAPEAAAGARKEHICPSQLSFQCHMCRGPFKAGRDYWNHLIRASKRHASMASPRAPAPRSRARWWCGWARCAERFPSEAELLAHARLHLPSHVQLMCGVCMLVLRTTDAKIVHMERHDAGVYECGVCRHACGDREALRQHWDTHARERPHRCDTCGWRFATSSALQVHVRKFHEGGPFCCAKCPQKFDDRTEVRIHFGAAHGKMRCPRPGCSYRCANKASLERHGTLAHRADAADGEDDDHDLDDPAPPPPPPPPPPADDEAAEHACAACGQAFPLWRALLAHARSAHAEAPPPTVACPDCGKAFRSPRDMAEHRRLHTGEKPFICAECGMTFKRAQNLEYHTKGAHKNERNFVCPECGKRFISNADMKRHLRYNHQNGMKTHLCPECGHKLTSLYKLKMHVQSRHTGERPHKCHLCDMGFVASSDLKKHVTFKHRKEHPFACGDCDKRYQRRRDLDVHRLRHHAGAQHRCPTCSKDFDSYASMTQHARYHTTEEPFQCAKCGRRFPHRMNLSRHLCTPDIKKSYHCASCGLSFTTSGSLKSHRRRLHAADQGVEQAPAAAKEAEAEAPQEAVVEAVQVSLSQPEPEAAAQLPHHHQDLDHQLHNPTVATQDEQYQHHLQQAVEQQAPARQQHHHQHQHHEPMHHLDQGAVGQAWGCGPPPGPPPGPPAPGTTPALAGQEAILALTRCSTYTDPEAAAPQAAPSMHLLAAPELHTPAPAPALRYEAPPPPPPPTATLVVKSEAPPPLVSLHVKAATHHPHMMYGPAAPTGPASTPPAVKLVSVSQPPPLTSITSPSPSGAGAGGLILGAPIQTTADGSFHLVFVPHGAPAPGPGCGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -