Fint002365.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- SALL3
- Assembly
- GCA_033675135.1
- Location
- CM066249.1:10431840-10437997[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0099 0.61 9.6 1.0 1 23 12 35 12 35 0.94 2 16 0.17 10 5.8 2.5 1 23 79 102 79 102 0.90 3 16 2.7 1.7e+02 2.0 1.6 1 12 108 119 108 120 0.91 4 16 0.6 37 4.0 0.2 1 13 180 194 180 201 0.80 5 16 5.7e-05 0.0035 16.7 1.1 2 23 259 280 258 280 0.98 6 16 2.6e-05 0.0016 17.7 0.1 1 23 286 308 286 308 0.98 7 16 2e-07 1.2e-05 24.4 2.7 1 23 314 336 314 336 0.98 8 16 4.4e-06 0.00027 20.2 0.7 2 23 359 380 358 380 0.97 9 16 1.5e-06 9.2e-05 21.7 0.2 1 23 386 408 386 408 0.98 10 16 1.2e-06 7.7e-05 21.9 2.0 3 21 416 434 414 435 0.94 11 16 2.1e-05 0.0013 18.1 0.5 2 23 457 478 456 478 0.97 12 16 0.00061 0.038 13.5 0.4 1 18 484 501 484 501 0.96 13 16 0.016 1 9.0 1.4 1 21 544 564 544 565 0.95 14 16 2.6e-05 0.0016 17.7 5.3 1 23 573 595 573 595 0.98 15 16 0.039 2.4 7.8 2.7 1 21 630 650 630 651 0.96 16 16 0.00043 0.026 13.9 4.8 1 23 659 682 659 682 0.97
Sequence Information
- Coding Sequence
- AtggggcgcagcggctgcggcctcCCCGTCGAGTTCACCTGCTGCATATGCCGGCGCGGATTCCCCTCCAACAGCGTGTTGGGCTCCCACTTGCTGGAGAAGCACGGCACGGTCTTCACCTTCGCGCCGCCGCAGTGGCAACCGGTGGTGACGCTGTCGGACGATGaggaggcgcccgcgcccgcgcctctgcACCGACCCATCCCCTCTGCATCCGTGCACatggggAAGTCCTTCCACTGCTACTCGTGCGACCGCACGTTCAGCGGGCTGGCTGCCCAGCGCCGCcacaacagcagcaggcacCGGGGCCGTCTCGCCTTCACCTGCCCGTGGTGCTCCGCGCGGTTCTGCCAGGACCCTCCCGTCCCCGGCGGGAGCAGCGCTCTGCCCTGCGATCCCTCTGTCCCAGCGGGCGCAGCACTCGAAGCTAGGGAAGCAGAGGTAAGCGAGCTGTGCGTCTCCTGCGACGAGTTACTTTGCGGGCACGACGCGATCCGGGAGCACAACCGTGCGTACCACCGCGGCTCCTTCTCGCACACCTGCCCGCACCTGGGCTGCAGCAAGCGGTTCGACAAGAAcctcctggtgctgctgcacgtGGTGTTCGGCGCCCAGGCGGCGCACTCTTCCCAGCGCTTCCCCGACACCCTGTCTGGGCTGGCCTCCCTCATTGAGGACCGCGGAAACCATCGTGACGGGGTGCAGCTGCCCGAGGGCGGGCGCTATGTGCTGGACGAGGAGACGCAGCGCCTGGTGCGCCTCGAGGAGAACCAGTGCGACATCTGCCTGCGCGTGCTCACCACCAAGAGCTCGCTCAAGATGCACTACCGCAGCCACACGGGCGAGCGGCCCTTCAAGTGCGGCGAGTGCGAGATGGCCTTCACCAAGAAGGGCGACCTGGGCCGCCACCTGCTGATCCACGCCAACGCCAAGCCATTCCCCTGCTCCATCTGCGGCGTGTCCTTCCGCCAGAGCTCGCACCTCAAGCAGCACACCAAGCGCCACTTTCCGCGCCGCGTGTCCTTAAAGTACGGCGAGgtcggcgaggacggcgccttcctggagccgctgcgctgctccgtgTGCCGCGCGCTCTTCTCCACGCCCAGCAACCTCAAGCGCCACCAGCTGACGCACACGCGCGAGCGGCCTTACAAGTGCGGCGAGTGCGGCATGGGCTTCAAGCGCCCCGACTACCTCAGCCGGCACGCGCTCTCGCACTCGAAGCAGAAGCCGCTCGCCTGTCCGCAGTGCGGCCTCTGCTTCCGGCAGAGCTCGCACCTCAAGCGCCACcagcagctggtggcgcccctgccccagcaccagccccatCACCAGCCTCAGGCCGCGGCGGACAACCCCCTGCAGTGCAGCACGTGCGGCGTCGTCGTGTCGTCCACCAGCAACCTCAAGAGGCACTTCATGACGCACACGGGCGAGCGGCCCTACCGCTGCACCGTGTGCGGCGTCACGTACACGCAGTCCAACAACCTCAAGCGTAGCCAGGTGTTCGGCGACGGATTCCAAGTGGGCGTCGCCGGGGGGCTCCTCGAGCCCGGCTACTCCCACGACGGCTACCCTGGGAGCGGCGTCGGCGATGGCGACGGGGTGCTCGACTCGCACCCGCACCACTGCCCTCGCTGCGGGAAGGGCTACCGCTGGCGGCAGAGTCTGACGGGCCACATGCGCTTCgagtgcggcacggcgccgtcctTCGTCTGCCCCCTCTgcccacaccgcgcgcgccgcagccaccaCCTCAAGAAGCACATGCGCgttcacgccgccgccggcgagctCGACAACCACAATTTAGTTGCCGACTTCCGCAACGGCGCCGGCTGGTTCCTGAGcgagggcccgcccggctcggggaAGGCCTCGTACGTGTGCAACGCGTGCGGCAAGTCCTACCTACACCACTCGTCGGTGCACAAGCACATTCGCTTCGAGTGCGGCAAGGAGCCGCAGTTCAAGTGTGATTTCTGCCCTCACCGAAGCAAGCTCAAGAGCAACCTCAAGAAGCACCTCCGCAACTCGCACAActacccgcccctctcctga
- Protein Sequence
- MGRSGCGLPVEFTCCICRRGFPSNSVLGSHLLEKHGTVFTFAPPQWQPVVTLSDDEEAPAPAPLHRPIPSASVHMGKSFHCYSCDRTFSGLAAQRRHNSSRHRGRLAFTCPWCSARFCQDPPVPGGSSALPCDPSVPAGAALEAREAEVSELCVSCDELLCGHDAIREHNRAYHRGSFSHTCPHLGCSKRFDKNLLVLLHVVFGAQAAHSSQRFPDTLSGLASLIEDRGNHRDGVQLPEGGRYVLDEETQRLVRLEENQCDICLRVLTTKSSLKMHYRSHTGERPFKCGECEMAFTKKGDLGRHLLIHANAKPFPCSICGVSFRQSSHLKQHTKRHFPRRVSLKYGEVGEDGAFLEPLRCSVCRALFSTPSNLKRHQLTHTRERPYKCGECGMGFKRPDYLSRHALSHSKQKPLACPQCGLCFRQSSHLKRHQQLVAPLPQHQPHHQPQAAADNPLQCSTCGVVVSSTSNLKRHFMTHTGERPYRCTVCGVTYTQSNNLKRSQVFGDGFQVGVAGGLLEPGYSHDGYPGSGVGDGDGVLDSHPHHCPRCGKGYRWRQSLTGHMRFECGTAPSFVCPLCPHRARRSHHLKKHMRVHAAAGELDNHNLVADFRNGAGWFLSEGPPGSGKASYVCNACGKSYLHHSSVHKHIRFECGKEPQFKCDFCPHRSKLKSNLKKHLRNSHNYPPLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -