Basic Information

Insect: Frankliniella intonsa
Gene Symbol: lolal
Assembly: GCA_033675135.1
Location: CM066253.1:9711422-9757557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.4e-05 0.00083 18.7 2.1 1 23 516 538 516 538 0.97

2 10 7.2e-05 0.0044 16.4 1.7 1 23 544 566 544 566 0.98

3 10 4e-07 2.4e-05 23.5 0.4 1 23 574 596 574 596 0.96

4 10 3.8e-06 0.00023 20.4 2.2 1 23 602 624 602 624 0.98

5 10 2.6e-06 0.00016 20.9 0.3 2 23 633 654 633 654 0.98

6 10 3.2e-05 0.002 17.5 0.3 3 23 662 682 660 682 0.97

7 10 4.9e-08 3e-06 26.3 2.8 1 23 688 710 688 710 0.98

8 10 1.1e-07 6.8e-06 25.2 2.3 1 23 716 738 716 738 0.98

9 10 0.0023 0.14 11.6 10.4 1 23 744 766 744 766 0.98

10 10 0.00019 0.012 15.0 2.1 1 21 772 792 772 793 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.4e-05	0.00083	18.7	2.1	1	23	516	538	516	538	0.97
2	10	7.2e-05	0.0044	16.4	1.7	1	23	544	566	544	566	0.98
3	10	4e-07	2.4e-05	23.5	0.4	1	23	574	596	574	596	0.96
4	10	3.8e-06	0.00023	20.4	2.2	1	23	602	624	602	624	0.98
5	10	2.6e-06	0.00016	20.9	0.3	2	23	633	654	633	654	0.98
6	10	3.2e-05	0.002	17.5	0.3	3	23	662	682	660	682	0.97
7	10	4.9e-08	3e-06	26.3	2.8	1	23	688	710	688	710	0.98
8	10	1.1e-07	6.8e-06	25.2	2.3	1	23	716	738	716	738	0.98
9	10	0.0023	0.14	11.6	10.4	1	23	744	766	744	766	0.98
10	10	0.00019	0.012	15.0	2.1	1	21	772	792	772	793	0.94

Sequence Information

Coding Sequence: ATGGACGGCATGCAGCAGCACTGCCTCGGGGTGCTGGCGTATCTGCGCCAGCTGCTGTCCTCGGAGTCGTTCGTGGACGTGACCCTGTGCTGCCTGGGCGGCTCCCTGCGTGCCCACCGCGTCCTGCTGTCCGCCTGCAGCCCCTACCTGCAGcggctgctgctggaccaccCGAGCGCGGAGCACACGACCATCATCCTGGCGGACGTGCACCGCGAGGAcatgcgcgccctgctgcagttCATGTAcaccggcggcgtggccgtgtCGCGCGAGCGCCTCGGCTCCTTCCTGCTCACGGCCGAGGCCCTGCAGGTCAAGGTGCTCAAAGACTCGGCGCTGACGTgctcggcggcctcggcctgctcggACAGCGGCTGCTACAGCTCCAACTCGTCCACCGTGTCGGACGTCAAGGTGCCCGTGGGCGAGGCGTgctgccccccggggccggcgcccctcgcgctgctggaccagcaccgcggcgccccttCGCCCTCGGCGTTCGGCGCCTCCAAGCCgcgggcgctcggcgcgctgggcccgctaggctgcccgcccgcctgcggcctggGCTCGGCCGAGTACGAGTCCATGCTGGGCCGCCACATgccgctgcacctgcagccgcccccgccccacctgcagccgcctccgccccacctgcagccgcccccgcctcacctgcagccccacctgccgccgcacctcgccttcGCGCCGCACTACGCCTtgccgccggggctgccgccggggctgccgctgccccctggcggccacggcgccaccAGCCCGTCGAGGACGCGGCCGACCAGCATCGTGACGCCGTCGCCCTGGATGcagagccgccggccgccgccgccgcggctgcagctcgACGCGCCCGGCGACAGCGTCGCGCCCGAGGACCGCAAGGAGGTGGtgacgcggccgcagcgcagagacagcggccccgccggggtcgtCCCCAAGAAGCGCATGTCccccctggccgaggcctaCCGCTTCCGGGACCAccggcagcgcgagcagcgcgacgcggaCCCTCCGCCGGCGGCCacaccctgcgccgccgccgcgccgtccgccaaCGCCCTCAACCTGAGCGTGCCCAAGGCGTCGCCTCCGCACGCCctggagggcgcgccgccgccgccgcctccgccgtccagccccgccgccgcggccgccggcgccgcctcccccgtcaTCGgcaagctgctgcagcagcccctgcacgaccccaacaacaacagcagcggcgcgccgcggcccgcccccgccgccccgcaccgccccatcCCCACGCGGGCCGTCATCAACGGCTGctacagcgcgccgcccccgccgtcgccgctgccgcccgcggccccgctcgcgccgccctcgcccgccgccgcgctgcccgaggccgcggcagcctccgccgccgtcaAGCGGGAGGTAGTGGACGAgtcgccgggggcggcggcggcggtggcggccaccCCCGAGGTGACCGTCGACGCGGAGGCGGCCAAGGACGaggacaacaacaacaagctgCACAGCTGCGAGGCGTGCGGCAAGCGCTTCTCGCGGCGCCAGCTGCTCGTGCAGCACCGGCGCGTGCACACGGGCGAGCGGCCCTACAcgtgcggcgcgtgcggcaAGCAGTtcagccagcgcggccactGGAGCACGCACCAGAAGCTGCAcgagcccgcgcgcgccgccgagcacgcGTGCGAGGCCTGCGGCAAGGCCTTCGTCACCAGGGCGTCGCTCAAGGTGCACATGCGGACGCACACGGGCGAGAAGCCCTTCCGCTGCGCCGAGTGCGGCAAGACCTTCTCGCAGCTGCGCAACTTCAAGTACCACCGGTCCGTGCACGAGGGCACGCGCGAGTTcgccgccacctgccccgAGTGCGGCAAGCTGTTCAACGACCGCGGCTACCTGTCCTCGCACATGAAGATCCACCGGAACAGGAAGGAGTACGGCTGCGAGTTCTGCGGGAAGAGCTTCAACCAGCGCGTGGCCTACAACATGCACGTCCGCATCCACACGGGCGAGAAGCCCCACCAGTGCCCCACCTGCGGCAAGACCTTCTCCCGGAAGATGCTCCTCAAGCAGCACCTGCGCATCCACACAGGCGAGAAGCCGTTCAGCTGCACGGTGTGCGGCAAGTGCTTCGCGGACCGGTCCAACATGACGCTGCACATGAGGCTGCACTCGGGCGAGAAGCCCTACCAGTGCACCGTGTGCTGCAAGAGCTTCACCAAGAAGCACCACCTCAAGACGCACATCAACTACCACACGGGTCTCAAGCCGTACGCCTGCGCCAAGTGCGGCCTGCACTTCTCGCAGTCGTCCAACATGCGCACCCACCACAAGAACATCGAGCGCATCGCGTCGGGCCGCGTCGCGGAGGCGAGCTAg
Protein Sequence: MDGMQQHCLGVLAYLRQLLSSESFVDVTLCCLGGSLRAHRVLLSACSPYLQRLLLDHPSAEHTTIILADVHREDMRALLQFMYTGGVAVSRERLGSFLLTAEALQVKVLKDSALTCSAASACSDSGCYSSNSSTVSDVKVPVGEACCPPGPAPLALLDQHRGAPSPSAFGASKPRALGALGPLGCPPACGLGSAEYESMLGRHMPLHLQPPPPHLQPPPPHLQPPPPHLQPHLPPHLAFAPHYALPPGLPPGLPLPPGGHGATSPSRTRPTSIVTPSPWMQSRRPPPPRLQLDAPGDSVAPEDRKEVVTRPQRRDSGPAGVVPKKRMSPLAEAYRFRDHRQREQRDADPPPAATPCAAAAPSANALNLSVPKASPPHALEGAPPPPPPPSSPAAAAAGAASPVIGKLLQQPLHDPNNNSSGAPRPAPAAPHRPIPTRAVINGCYSAPPPPSPLPPAAPLAPPSPAAALPEAAAASAAVKREVVDESPGAAAAVAATPEVTVDAEAAKDEDNNNKLHSCEACGKRFSRRQLLVQHRRVHTGERPYTCGACGKQFSQRGHWSTHQKLHEPARAAEHACEACGKAFVTRASLKVHMRTHTGEKPFRCAECGKTFSQLRNFKYHRSVHEGTREFAATCPECGKLFNDRGYLSSHMKIHRNRKEYGCEFCGKSFNQRVAYNMHVRIHTGEKPHQCPTCGKTFSRKMLLKQHLRIHTGEKPFSCTVCGKCFADRSNMTLHMRLHSGEKPYQCTVCCKSFTKKHHLKTHINYHTGLKPYACAKCGLHFSQSSNMRTHHKNIERIASGRVAEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732655;
90% Identity: iTF_00732655;
80% Identity: iTF_00732655;