Fint002949.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- CAMTA1
- Assembly
- GCA_033675135.1
- Location
- CM066250.1:12853229-12872254[+]
Transcription Factor Domain
- TF Family
- CG-1
- Domain
- CG-1 domain
- PFAM
- PF03859
- TF Group
- Unclassified Structure
- Description
- CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein [2]. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-44 1.7e-40 136.3 0.2 10 116 19 123 16 123 0.98 2 2 0.3 2.5e+03 -2.9 3.2 79 112 282 315 260 332 0.77
Sequence Information
- Coding Sequence
- ATGCTCGGCTCGATCGACACCGACACCTCCTCAGCTCAGCCTGCTGCTCCTTGTACTGAGATCGCCGCGGTACTCATCGCCTTTGAGCGCCATGCCGACTGGCAGTCCAAGGAGGTCAAGATCAGGCCCAAGAGCGGCTCCATGCTGCTGTACTCGCGGAAGAAGGTCCGCTACCGCCGCGACGGCTACTGCTGGAAGAAGCGCAAGGACGGCAAGACGACCCGCGAGGACCACATGAAGCTCAAGGTCCAGGGCACCGAGTGCATCTACGGCTGCTACGTGCACTCCGCCATCCTGCCCACGTTCCACCGGCGCTGCTACTGGCTGCTCCAGAACCCCGACATTGTGCTGGTGCACTACCTCAACGTGCCGTACCCGGACGACAACAAGATGGTCTCCATCTCGCCCAGCCTCGCGCTCTGGGGCGACAAGAAGGAGTGGACGAAGGAGGAGCTGGTGTCGCAGCTGAAACCCATGTTTTACAGCGAGGACGAGCCAGACCACAACAACGAGCTTGAAATATCGACCGCCGAGACGGTCGAGTCCATCGTGACGCAGCTGatggagcggcagcgggcggcgcgcgccgccacgctgtCCAAGCAGCTCGAGTGCGGCTGCCCGGACTCGACGTGCGCCGACGGCAAGACGTGCTCGCACCCCATCCGCCGCATCACCGCGGCCAAACCGCAGCTCATCTCCCTGGACCGCAGCAACCAGGTGTCCTCGACGACGGGGTCCTCGCTGCTcgcgcaggtgcaggtgcaggcgcaggtgcaggcgcaggtgcaggcgcagcgccaccacgcggcccagcacgccgcgcagcacacCCAGCACCAGATCCACCTGagcgaggcgcaggcgcaccaGCAGGCGCACCAGCAGGcgcaccagcgccagcagcagctgcagcaccaccaggcggccgcccagctcgtccaccagcagcaccaccagcagcagagccagcagcaccaccagcagcagcagcagtcggcgccgccgctcgtcctcagcctcagccagATCCAGACGAGCAGCCTTCTCATCCTCAACAACGCGACCAACGGCCAGGCcaacctcggcccggcctcggcccaccAGGTGGCCACCGTCACGTCGTTCGTCCGCaacgtgccggccgcggccgtgcccggcctccacccccaccacccgcaccacaaccaccaccacctggtGCAGCAGATGaagccggcctcggccgccgccgtggccgaggccaagGCGGCCGTGTCGGAGGCGTCCACCTCGCTCCTCAtgaagcaggagcaggagggcatGGAGATGAACACGTGCCGCATGGCGGCCATGACGGCCGTGAgccagagcagcagcacggtgGTGAGCGTCACCAGCTCAGCCTGCAACATGGACGTCACCAATGGCAACATAGCAGAATACTCACCTGAATGGGCATATCCTGAGGGTGGAAGGGAGTTCTTCGGTGTTATTGCCCTgCTCATGAGGCTTCACTCCTCTGatGTGGTCATGTTCTAG
- Protein Sequence
- MLGSIDTDTSSAQPAAPCTEIAAVLIAFERHADWQSKEVKIRPKSGSMLLYSRKKVRYRRDGYCWKKRKDGKTTREDHMKLKVQGTECIYGCYVHSAILPTFHRRCYWLLQNPDIVLVHYLNVPYPDDNKMVSISPSLALWGDKKEWTKEELVSQLKPMFYSEDEPDHNNELEISTAETVESIVTQLMERQRAARAATLSKQLECGCPDSTCADGKTCSHPIRRITAAKPQLISLDRSNQVSSTTGSSLLAQVQVQAQVQAQVQAQRHHAAQHAAQHTQHQIHLSEAQAHQQAHQQAHQRQQQLQHHQAAAQLVHQQHHQQQSQQHHQQQQQSAPPLVLSLSQIQTSSLLILNNATNGQANLGPASAHQVATVTSFVRNVPAAAVPGLHPHHPHHNHHHLVQQMKPASAAAVAEAKAAVSEASTSLLMKQEQEGMEMNTCRMAAMTAVSQSSSTVVSVTSSACNMDVTNGNIAEYSPEWAYPEGGREFFGVIALLMRLHSSDVVMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -