Fint004201.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- TRERF1
- Assembly
- GCA_033675135.1
- Location
- CM066253.1:11299274-11312796[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-12 8.4e-09 34.4 0.3 4 45 1224 1265 1221 1266 0.94
Sequence Information
- Coding Sequence
- aTGGCCACTGTCGCCGTGACGGCGACCACGATGCTCGTCatgaccaccaccagcacggctgccgcggccgcgctgcagcagccccccgccctagCGCGACTGCCCggggtgccgccgcggccgccgcccaccaagAGGCCGCGCCTCACGGCGCAAATGTCGACGGAGGTGACCGACTCGCTGGGCAGGAAGCTGTGCCTGCTGCCGAGCTTGCCCAGGCTGAAGACCTTGTCGGGCtccgtgggcgggggcggaggcatCCTGTCCAGGGCGCTGTCTGGTGGCCTGACCGTGGCGTCTAGGACCACCTTTGTGAGCCGCgacggcaccggcaccggcgccgccaccacctccaccagcaGTACGacctgcgcgggccgggccgtgcccgtgcccgtgggcATCCTGGCGCGCACTCTGTCAGCGCCGGCCGACCTGCAGCCCACCAGCACGTCCCAGGaggagcggcccgccgcgcccacgcccgcgctcgGCCTCTCCGACTcgtgcgccagcagcagctcgctgtccaccgccacctcgccgcacctcggcctcggcctcggcctcgacaGCCTCCAGGTGGCGGAGCAGGCCTCCGTCACGCCGCTGTTTGCCGAGTCCCCGGACGACCTCATCGACGTGGCGGACGCGCTCAACGCCCTCAGCGCCGGCGACGACGACGCAGTGGGCAGCAGCCAAGACTCGACGCAGCTGtctgcgggcagcagcagcagtagcagcagcagcagctgctgcagcggcaccagcggctgcagcggtaCGACCAACTTCAGCGGGAGCAcgacgagcggcgcggccgccacctgcTGCAATGcgagccggcagcagcagctgcagcagcggccccgggccgtgtCTCCCAGCAGGCTGGGTCCACAGCAGTgccagGTGTGCTCCAAGGTGTTCAGCAACGCCTCCGCGCTGGCCAAGCACAAGCTCACCCACAGCGACGAGCGGCGGTACGCGTGCAGCGTCTGCTGCAAGGCCTTTAAGCGGCAGGACCACTTGAACGGCCACATGCTGACGCATCGCAACAAGAAGCCGTACGAGTGCGTGCTGGAGGGCTGCAGCAAGAGCTACTGCGACGCGCGGTCGCTGCGCCGCCACGAGGAAAACCACCATCACCTCAAGGGGCTGCCGGCGCTCAAGGACAAGGGCGccgagaaggagaaggaaaagGAGGTGCGTCGGAGGAACTCCAAGACCATCCTCAGCCTACTGTCTGCGGCCGGGGAGAGCGGGGACAGTGAGGAGGGCAGCTGTCCGCCCGCGCCAGTCCCGGCGCCAGCGGCTGTGCCCGGCGCctcggccaccgccaccctgtCGCCAAAGAGAAGCCCTGCGGCGTCCACCACCGtgtcctcgggccgggcgggggccgcggacTGCGCGCCGGACCCGACAAGTCCCAAAGTATCGACAGCTGCCGTGTCACAAGTCTCGGggctcgccgtcgccgtcggggAGGCGTCGCCACAGCAACAGCTGGCGAAGGCCGGCGGGTCCGCAGGCGGGTCCGTGTCGCCCCTCGTCATCCCGAccgtccccgcgcccacgcccgcgctctGCGTGTCCTCGTCCCAGGCCTCGCCGCAGTCCTCgccgctgcccagccctgcgcccgcgccggcgctcaTCTCGCCCGTCACTGTCACGTGCTCggtcccggcgccggcgccgagccccgGCGTGCCTGCGGTCCTGGTGGCCACGCAGCCCTCGCCGCTCAGGATACCACAGTTGTCCAATCCCTCCCCCATCACCATCCCCTCGGTGAGGCCGCAGCTGCTCACGGCGAGGGTGGTGTCCTCCAAGCCGCTGGCGGCGAACCAACTGCAgagcgcgcaggccgcgccccagcagacgacgcagtTTAGTTTACTCCTTGATCAGTCCATTCCACAGAGCCCCGTGCAGCAGGCGGCTCTGACCTCGTCCCCCCAGGCTCAGGGGGATGTCCTGCCCGCCAACTTCGTTTCCTCCTTTCTGACGTcgtcgccgcagcagcagatgGCTCAGGGCTTGAGCCAGCCTATCTTGATTAAGACCTCGACCAGCATGGCCGTCGGTATCCAGTcccctgccgcggccgtgcAGTCTGGCGTGGTGggagggcggccccggccgcagccccccgcggagccggcagcgcaggccgcgcaggcggagcaggccgtcAAGATGCTGCCGCCCGTGTCCTGGTCGCACATGACGGTCACGTCCACGTCGGGCCAAACGATGCAGATCTCCACCCCGATTGTGGGTCATAGTGCGACCCACATCAAGACCAACCTGCCGCAGACGTCCGCTCTGCTTgtagcggcgggcggcaccggAACAGTgcaggacgcggcgctggAGGCGTTCCAGTCCCAGCTCCACACCGTGCAGCAAGTCCACCTCGTGCCCATGCAGTCGCAGGTGTCGCTGGCGACGCCCCACACCGTCAAGGGCACCATGGTGACCGAGGtcattcagaagagcgctcagCAGgtgcctgccgctgccgatcAGCAGTCCGACACGTCTCGAGCTCAAACTCTAGGAACCCAGGAAGACGCAAAGAAGAACGCCAAGGCGGCAGCGGACGCAGCCAACAACCAAAGCAAGCCTGTAGCCTGCAACTTATGCAACAGGCGTTTCAAGAACATTCCTGCGCTGAACGGACACATGCGCCTTCACGGTGGCTACTTTAAAAAAGAATCTGAATCGAAGCGCTCGGATAAGCGCGAGTCCACCGGGCCACCCCTGCAGACGGCGAGCGTTTCGGTGAGGCAGCTCATCGAAGAGAAAATAATCCAAAAGCGCGGCGGGACGATCGGGAgggtggcgctgctcgcgggaCGAGACAGCGCCGTGTCATCGACGTCCTCCCTCATGGCGCTGACCAGCAcggccaccacgaccaccacgacgGCGAGCTGCCCGccgtcctccctcctcgctcAGGGTGagcgcaggcggcaggcggagcagcacgagcaggccTTCAGAAAGATGATGCCTCAGTACTTTAAGTCGGAAGACATTGAAGATGAAGTGTTTCTTAGTCCTCCCATCGTGCCTgacagcccgcccagcctcaaCAGCCCCGCGAGAGCCTACAAGTCGCGGCTGAGGAGTTGTCGTCGGGAGGCCATCTGCTCAGCGAGCATGCCGTTCACCCCCGCTCCCATGCTGGACCCCAACCGCACGGGGCCAGGTCTCATGGCGCACGCAGGCTCGTCGTGGCACTGCTCGTCCACCACGGCCGACGGCGAGGACAGTTGCGACGCCATGGCCATCTCGGCCCCTGAGTCGGACAGCTTCCCGCACGTCAACGTGGGTGCGCGCTTCCAGTGCGCCATCCCCTCCTGCGATAAGAGGCCTTACTCGTGGTCCGACGAGCCAAGCAGCGGCCAAAATTATCTCTTGTGGGagccgggcgtggtggagaAGTGCACTGACGCTGAGGTGGATGCGTACTTGGATTTCGCCTGTTGCGACGCGATCCCTTGGGGTGGTCGCAACCAGGAGTACGCCCTGCACCTACTCCACATGTGCGACGGTGACATTCAGGAGGCCATGGTGCAGCTCATGCAGCGAAGCCCGATCCTCCCCGCCGATCACTCTTTACTTTCGTATGATTATGGCGTTACCGAATTGTGGAGCGTTGAAGAAATGGACACTTTTGTCAAAGCCTTATCAAAGCATATGAAGAATTGGACACAAGTGGCTAAGGAGGTTGGCAACAAAACTGCAAGGGAATGTGTTCACACGTATCGACATCATCTGAAAGTCGTTTATTTGTCTGTGAACTGGCTGACTGTTCAGCGAGTTTTAATTCAAGAGCTGCTCTGA
- Protein Sequence
- MATVAVTATTMLVMTTTSTAAAAALQQPPALARLPGVPPRPPPTKRPRLTAQMSTEVTDSLGRKLCLLPSLPRLKTLSGSVGGGGGILSRALSGGLTVASRTTFVSRDGTGTGAATTSTSSTTCAGRAVPVPVGILARTLSAPADLQPTSTSQEERPAAPTPALGLSDSCASSSSLSTATSPHLGLGLGLDSLQVAEQASVTPLFAESPDDLIDVADALNALSAGDDDAVGSSQDSTQLSAGSSSSSSSSSCCSGTSGCSGTTNFSGSTTSGAAATCCNASRQQQLQQRPRAVSPSRLGPQQCQVCSKVFSNASALAKHKLTHSDERRYACSVCCKAFKRQDHLNGHMLTHRNKKPYECVLEGCSKSYCDARSLRRHEENHHHLKGLPALKDKGAEKEKEKEVRRRNSKTILSLLSAAGESGDSEEGSCPPAPVPAPAAVPGASATATLSPKRSPAASTTVSSGRAGAADCAPDPTSPKVSTAAVSQVSGLAVAVGEASPQQQLAKAGGSAGGSVSPLVIPTVPAPTPALCVSSSQASPQSSPLPSPAPAPALISPVTVTCSVPAPAPSPGVPAVLVATQPSPLRIPQLSNPSPITIPSVRPQLLTARVVSSKPLAANQLQSAQAAPQQTTQFSLLLDQSIPQSPVQQAALTSSPQAQGDVLPANFVSSFLTSSPQQQMAQGLSQPILIKTSTSMAVGIQSPAAAVQSGVVGGRPRPQPPAEPAAQAAQAEQAVKMLPPVSWSHMTVTSTSGQTMQISTPIVGHSATHIKTNLPQTSALLVAAGGTGTVQDAALEAFQSQLHTVQQVHLVPMQSQVSLATPHTVKGTMVTEVIQKSAQQVPAAADQQSDTSRAQTLGTQEDAKKNAKAAADAANNQSKPVACNLCNRRFKNIPALNGHMRLHGGYFKKESESKRSDKRESTGPPLQTASVSVRQLIEEKIIQKRGGTIGRVALLAGRDSAVSSTSSLMALTSTATTTTTTASCPPSSLLAQGERRRQAEQHEQAFRKMMPQYFKSEDIEDEVFLSPPIVPDSPPSLNSPARAYKSRLRSCRREAICSASMPFTPAPMLDPNRTGPGLMAHAGSSWHCSSTTADGEDSCDAMAISAPESDSFPHVNVGARFQCAIPSCDKRPYSWSDEPSSGQNYLLWEPGVVEKCTDAEVDAYLDFACCDAIPWGGRNQEYALHLLHMCDGDIQEAMVQLMQRSPILPADHSLLSYDYGVTELWSVEEMDTFVKALSKHMKNWTQVAKEVGNKTARECVHTYRHHLKVVYLSVNWLTVQRVLIQELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732752;
- 90% Identity
- iTF_00732752;
- 80% Identity
- iTF_00732752;