Fint002242.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- ttk
- Assembly
- GCA_033675135.1
- Location
- CM066249.1:8272427-8275647[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.4e-15 1.3e-11 42.9 0.0 2 41 407 446 406 450 0.91
Sequence Information
- Coding Sequence
- atGGCCAGCGCCGGCCAGCAGTACTGCCTGCGATGGAACAACCACCGCTCCAACCTGCTCACCGTCTTCGACCAGCTGCTGCAGTCCGAGGCCTTCACCGACGTGACGCTCGCCTGCGAGGGCGGCGTCTCCATCAAGTGCCACAAGATGGTGCTAGCCGCGTGCTCCGCCTACTTTGCCGCGCTCTTTGCCGAGCTGCCCTGCAAGCACCCCGTGGTCGTGCTCAAGGACGTCAAGTACGCCGACATGAAGGCCATCCTGGAGTACATGTACCGCGGCGAGGTGAatgtggagcagcagcagctcaccGCCCTCATCCGGGTGGCGGAGACGCTCAAGGTCAAGGGTCTCGTCGAGGAGAACGGCCACCACTCGTCCGGCTGCGCGTCAGAGGACTACAAgcaccacaacaacaacaccatcAGCAACCCCAAGGAGGACCTGGTGCCGTCCTCGGCGCCGTCACCGCCCTCGTCCATCACCACGTCGACGGGCCTGGGCGcgtccagcccgccgcacagcacctACAAGTACCCCTACAAGTCGCCGTCCTCggaccgcgagcgcgagcgtgagcgagagCGTGAAcgtgagcgcgagcgagagcgtgcgcgcctgtcgctgccgctgtgggccatgccgggcgtgccgggcatggcgggctcgccgctgcagccgcagtcctcgctgctggccgccgcctaCGAGTCCGGTGACATGTCGCCGCTCCAGCGCAAGAAGCTgtcctcgctgctgctgcactcgcGGGACACCCCCATCCTGAGGACGGTCCTCGGCCAGGCGCAGGGctcggagggcgcgggcgcggccggcaacggccagggcgccaccagctcgcgcgccggcccgggctcgagctcgggggccggcagcggcgcggcgcagggccaggccgacTCGTCGCAGCCCGTCTCGCTCGTGTGCCACCCCGACTCCCACGACTCCCCGAGGCCGGgctcccactcccactccaACGGCTACATGTACGACTTCGAAAAGGTGAAACAAGAAGGCAACGAAGGCTCTCCATCTCCGTATACCGACATCTCCATGAACGAAGAGGAAATGGAAAAGACACGAATGATGATTCCCTCCTCATCGCCCCTGAGTGCTGCTGATATGCGCGGCGTGTCGTCCAACATCGTGCCGTACGTCCAGCAGCAGAAGCCCGAGTGGAAGCGCTACAAGCAGTACACGCGCAACGACATCGAGTGCGCCATcgaggcggtgcggtccggcatGTCGGCGCTCAAGGCGGCGCGCAAGTTCGGCGTGCCGTCGCGCACCCTGTACGACAAGGTCAAGAAGCGCGGCATCGTCACCAACCGCCCCGTCAAGCGGGCCTccaacggcggcgcgggggcggccagcagcaacGGCAACCCCAACAACGGCAACGGCGAGGCGTCCAACGGCGCGTCCTCGAACGGCGTGGCCTTCCCCTTCGGcctgagcggcgcgcccgtgcaGGGCTGGATGGGGCACAACATGGACGAGGCGGAGAACAGCAGCCTACCGGCCACGGGGCTGGTGGAGCACTGGATGGTCAAGGCGGAGATGGAGCGGGAGGCGATCGCGGCCATGGCctcggcgcaggcggcgcacgCGCTGAGCATCAACTCTGGCAGCTCGTCCAGCCCGCCGGAGGACAGGGACCGCGAGCGCGACCGGGACCGCTCACCCGACGCCCGCTCGCCGTCACCCAGCGCCAAGCCCATGCCGCGgtacccgccgcacctcgcgggcgcgctcggcctGGGCCAGCTCGGCCAGCTCGGGCACGCGCTCAGCGCCCTgggcgtgcagcaggcgcaggccccCGCCAAGAGCgagtccccgccgccgcagcgcgagcgcgagcgtgaACGTGAACGTGACGCCTCGTCGCCGCCCATGGACGTGGACGCCTACCAGGACCAGGTGGAGGACCTGTCGGTGGCCAGGACCACGTCGTCGTGCGAGGAGATgtcgccgccgagcagcggggcgggggtgggggcgggccacgccgccgcgccgcacgcctccAGGGTCATCGTGAGCatgcaggccgcgcgccaggaggaggagagggagcgggagcgggagagggagcgggaccTGGACCGCGGGCTGGAGATACGAGGCCCGGCGCCCATCATAGCCATGGACGAGACGCGCGGCAGCCCGATGGAGGTCGGCGGAGAGCGAGACTGA
- Protein Sequence
- MASAGQQYCLRWNNHRSNLLTVFDQLLQSEAFTDVTLACEGGVSIKCHKMVLAACSAYFAALFAELPCKHPVVVLKDVKYADMKAILEYMYRGEVNVEQQQLTALIRVAETLKVKGLVEENGHHSSGCASEDYKHHNNNTISNPKEDLVPSSAPSPPSSITTSTGLGASSPPHSTYKYPYKSPSSDRERERERERERERERERARLSLPLWAMPGVPGMAGSPLQPQSSLLAAAYESGDMSPLQRKKLSSLLLHSRDTPILRTVLGQAQGSEGAGAAGNGQGATSSRAGPGSSSGAGSGAAQGQADSSQPVSLVCHPDSHDSPRPGSHSHSNGYMYDFEKVKQEGNEGSPSPYTDISMNEEEMEKTRMMIPSSSPLSAADMRGVSSNIVPYVQQQKPEWKRYKQYTRNDIECAIEAVRSGMSALKAARKFGVPSRTLYDKVKKRGIVTNRPVKRASNGGAGAASSNGNPNNGNGEASNGASSNGVAFPFGLSGAPVQGWMGHNMDEAENSSLPATGLVEHWMVKAEMEREAIAAMASAQAAHALSINSGSSSSPPEDRDRERDRDRSPDARSPSPSAKPMPRYPPHLAGALGLGQLGQLGHALSALGVQQAQAPAKSESPPPQRERERERERDASSPPMDVDAYQDQVEDLSVARTTSSCEEMSPPSSGAGVGAGHAAAPHASRVIVSMQAARQEEERERERERERDLDRGLEIRGPAPIIAMDETRGSPMEVGGERD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00732649; iTF_00731862; iTF_00731400; iTF_00966654; iTF_00966555;
- 90% Identity
- iTF_00731862;
- 80% Identity
- iTF_00732649;