Fint001409.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frankliniella intonsa
Gene Symbol
lov
Assembly
GCA_033675135.1
Location
CM066247.1:10655335-10659805[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.4e-18 1.9e-15 55.2 0.0 1 44 528 571 528 572 0.96

Sequence Information

Coding Sequence
ATGAGCACGGCGGCGATGACGGGCCTCCCTCTCGCAAGCGTGAACGAGCGTAGCCCcgtgggcgtggccgccggccccgacgGCGACATGGCCGGCTCGGGCTCCGGGTCGCCGCACTACAGCCTGCGGTGGAACAACCACCAGAGCCACATCCTGCACGCGTTCGACACGCTGCTCCAGAGCGAGGCCCTGGTGGACGTGACCCTCGTCTGCGAGGAcacgcggcgcgtgcgcgcgcacaaggTGGTGCTGTCGGCGTGCAGCCCTTTCTTCGAGAAGATCTTCGCCGAGACGCCGTGCAAGCACCCCGTCATCGTCCTCAAGGACATCCGGTCGTGGGAGCTGCAGGGCATCGTCGACTTCATGTACAAGGGCGAGATCTCGGTGGTGGAGGAGCAGCTGTCGTCGCTCATCAAGGCGGCCGAGTCCCTGCAGGTGCGGGGGCTGAGCCACCCCGAccaggtccccgcgcaggcccgcggccaccccggtCACCtctccggcgccggcggccaccccggccacggcctcggccggccgcagtcGCCGCCCCAGGTCTGCCTGGAGAAGTTCCCCCACTACCCCGGGCCGTACCACAAGGACGACGCCCTGAGTCCTCACAacgggcccggcgcgtcctCGCCCTACTCCCCCTCGCCGTCGGACCGGGACCGCGACCTGAGGCTGTCCTCGCCGCTCCGGCTGCCCACCATCCCCCACATGCCGCACATATCCTTCTCCGAcaaccctcccacccccacgggCGACCACTTCTGCTCGTCGCCTCTGCCTAGGAGAAAACAGGCGAGACCGCGCAGGAGGTCCGGCGAGAGCGGCGGCACCCTGAgcggcgcccagctcggccccaTCGGCGGCTCCCAGCCCCAGGACCTGAGCAAGGCCACCTCCTCGCCCACCGCCGAACGCCCCGAACGCCTGGAACGCCCCGACCGACTGGACCGTTTGGAACGCCCCGACCGCATGGACAGACTCGACATGGCCGAGAACCTCTCCGTCAAGAGGAGTCGACCGTCCAGCGTGGGTCTGTCCGGcagcggagagcggagcgggcactCGTCCCGCCagaccacccccgcgccgcccaccacacCCAACGCTATGCCTCCAAACCTAAAACACGAAAGTGAAGAATCTCAGTCGGCCGATTGTCTGGACATGTCGACCGAGAGGAGAGACTTCCCCAACCACGTTGCTGATCATCCTCACCCTGGCCTCCTCGGACTCCGGCCGGACTCCTCATTAGACAACCCTGGCTTCCCCAACATGCCGTCGCTCTCCGCCTTGGCACTGACAACTCCTCAACACGTATTTCCTTTGGACTCACAACTCGGACTGTTCCCCGGGATGGAAGCGTGCCGGAACCCGCTGCTGAACGACCTGTCCAACGACAGGAACGAGAACCACCACCTCCCCGGCAGCGGGCCCAACCCCAACTCGGGACCCGTATCCGGCTCCGGCACCCCCACCAGCAGCAAGCGCAGCAAGAGCAAGTGGCAGGACGGCAAGTGCCGACCCAAGGGCCAGcactcggcgccgcgcggcggcccgccccggtcctggACCAACGCCGAGCTGACCGAGGCGCTGCAGCACGTCTGGAACAAGAAGATGACGACGTCGCAGGCGTCGCGCATCTTCGGCATCCCGTACAACTCGCTGCTCATGTACGTCCGGGGCAAGTACGGCAAGTCGCTCAAGCTGGAGCAGCTGCGCAAGGACTGCCAGGGCGGGCCCATGGGGCCGCTGGacctgctggggctgccgcAGCTCGGCCACAACAACAACCAGATCACCACCAAGGAGCAGCACCTGGAGGACAGGCACCGGCTGGAGCGGGACATCGACCGGGACGTGCCCGCCATGCCCGAGTCGGACCTCATCATGGGGCCCAACTTCAGCCCGTACTCGGGCGCCAACTTCTACCCCGACTTCAGCTCGTTCCCCATGCCCGTGAGCATGGTGCACCTGCTGCCGCAGTCCGAGAAGAACCGTCTGaaccaggcgggcgcgggccagctGCCGCTCGCGCTCGACTTCGCCAGCTTCCGGGGGGACAAGGACCTGGACCGGGACCACGACGACCGGGACGGCGACCGCGACCGGAAGCGGGAGCGCAAggtggcgcaggcgcaggcgcaccaGGCGATcctgcgggagcgggagcgggagctgcagcagcagcagagggagcTGCTTCAGcgggagctgctgcagcgggagcagcagcagcggcgggagcgggagcgggagcaggaccagggggatcagcagcgggagcgggacagggacccgccctcctcgccgcggtcGTCCCAGTCGAcgccgcagcccccggccgccccggccaccccgccctcgcccacgcAGGAGAACAACAACACCAATACGGACAAGCTCATCAAGACACAGGAGCTGCTCACGTCGTTCCGGTCGTGTGGCGGGGTCAGCCCCAAGGACGACCCCATGACGCCCgtgcccacccctcccctggtGACCCTGCCCGCTAAGCAAGAGCTGGTAGAGTTCAACGGCCAGGAATAG
Protein Sequence
MSTAAMTGLPLASVNERSPVGVAAGPDGDMAGSGSGSPHYSLRWNNHQSHILHAFDTLLQSEALVDVTLVCEDTRRVRAHKVVLSACSPFFEKIFAETPCKHPVIVLKDIRSWELQGIVDFMYKGEISVVEEQLSSLIKAAESLQVRGLSHPDQVPAQARGHPGHLSGAGGHPGHGLGRPQSPPQVCLEKFPHYPGPYHKDDALSPHNGPGASSPYSPSPSDRDRDLRLSSPLRLPTIPHMPHISFSDNPPTPTGDHFCSSPLPRRKQARPRRRSGESGGTLSGAQLGPIGGSQPQDLSKATSSPTAERPERLERPDRLDRLERPDRMDRLDMAENLSVKRSRPSSVGLSGSGERSGHSSRQTTPAPPTTPNAMPPNLKHESEESQSADCLDMSTERRDFPNHVADHPHPGLLGLRPDSSLDNPGFPNMPSLSALALTTPQHVFPLDSQLGLFPGMEACRNPLLNDLSNDRNENHHLPGSGPNPNSGPVSGSGTPTSSKRSKSKWQDGKCRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCQGGPMGPLDLLGLPQLGHNNNQITTKEQHLEDRHRLERDIDRDVPAMPESDLIMGPNFSPYSGANFYPDFSSFPMPVSMVHLLPQSEKNRLNQAGAGQLPLALDFASFRGDKDLDRDHDDRDGDRDRKRERKVAQAQAHQAILRERERELQQQQRELLQRELLQREQQQRREREREQDQGDQQRERDRDPPSSPRSSQSTPQPPAAPATPPSPTQENNNTNTDKLIKTQELLTSFRSCGGVSPKDDPMTPVPTPPLVTLPAKQELVEFNGQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00731883;
90% Identity
iTF_00731883;
80% Identity
iTF_00732653;