Fint005633.1
Basic Information
- Insect
- Frankliniella intonsa
- Gene Symbol
- retn
- Assembly
- GCA_033675135.1
- Location
- CM066255.1:16084927-16137508[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-27 2.4e-23 81.3 0.0 2 89 231 316 230 316 0.96 2 2 2 5.6e+03 -3.2 0.0 25 38 474 487 438 490 0.64
Sequence Information
- Coding Sequence
- aTGATGGAATCCAAcaacgaggaggaggcgagcgaCCCGGAGCTGGGCGAGGAGGACAGCGACGACGTGCTGCGCCGGCTGCccgtgctgggcgggctggccgcggggctggcgggcgggctggcggccgcggcgggcggcgcagcagccgggcccggtgaCGCCAGCAGCCCGCACTCCAACGGCGACcccgaggagggcggcgacGTCTCGGGGGACGGCGAGCCGGACCAGGACCACGACGACAGACCCGAGGACCACAAGCAGaacaacaataataacaacaacagcagcgccaacaacaacagccTGGGCAGCGGGCGGTCGTCGCTGGAGCGGGAGCTGTGCCGgccccccagcgcgccgcagcccccgccggggctcacccccaccgccgcgcccttctcgCTGCcgttccccttcccccaccccgccgcggccgccgccttcctgccgcccccgggcgccacccccgccagcgcccccgggggcggcgcggccgccggcgcccagcaccgccactcggcctcgtcggcgtcctcgcaCTCGTCCGAGTCGTCCACCTCGTCGCAGCAGACGTGGAGCTTCGAGGAGCAGTTTAAACAGGTGAGTAACGAGCTGACCTCATCTGctagccccgcgccgcccagcctgaCCAACGGATTATATGAAATCAACGACGATCCAAAGAGGAAGGAGTTCCTGGACGACCTGTTCAGCTTCATGCAGAAGCGCGGGACGCCGATCAACCGCCTGCCCATCATGGCCAAGAGCGTGCTGGACCTGTACGAGCTGTACAAGCTGGTgatcgcgcgcggcggcctcgtgGACGTGATCAACAAGAAGCTCTGGCAGGAGATCATCAAGGGCCTGCACCTGCCCTCCTCCATCACCTCGGCCGCCTTCACCCTGCGCACACAGTACATGAAGTACCTCTACCCGTACGAGTGCGAGAAGCGGCGCCTGTCGACGCCCGCCGAGCTGCAGGCGGCCATCGACGGCAaccggcgcgaggggcggcgctcgTCGTACGGCACGTACGCGGACatggtgcagcgcgcgcccgggggcggcgggggcggcggcggcggcctggtcggcggcctgcccggcggcgtccAGCTCTCCCAGCACCCCGCGCAcccggcgcaccccgcgcaccccgcccacccctcgcAGATGCCCCTCAGCCTGGTgacgcagggcggccgcctcctcaaCGGCAACGGCCACTACAACCACAACAACCACCACCagctcctgcccccgcccggatCAGGTCACACCCCCGCCGAGCTGGAGAACCGTATGGCCGAGTACATGAAGCTCATCAGCAAGGAGCTGCGCAACTCGGCCGGCACGCCACCCCTCTCCAGACAAGGTTCGCCACCCACCTCGCCGCGGGAGGCGACGATGAACGCGCTGGAGATGTCGCGGCTCACGCTGTGGAACCTGTACAACAACAACACGCtgggcagcgtggcggggctgggcggcgtggcggcgggggcgctgggcgccatgggcgcggcggccgcgggcgcgctcggctcgctgggcgggctggcgggcgggctggccggccccggggcgctggcggcgcaggcgcaggcccaggcgcaggccgccgccgccgcgcaggcggagcaggccgagcagcagcaggaccaccccgcgcacccgcaccagcagcccgccgagccgcagcGCGAGGCGCTCAACCTGGGcgtgcagcgccagcagcagcgcgagcgcgagcgggagcagcagcagcgggagcgggaacgggagcgggagcgggaacgagaacgggagcgggagctggtgcgcgcgcagcgggagcgggagcgggacagCCAGAGGGAGGCCACCATCAAACGGGAGCCCGAGGAGGCCTTCATGCCCGCCGCCAAgaggcccgccctgcaggacagggaccgggaccgcgaccgcgaggaggacgcgcacagccccagccccgtcaAGACCGCGGGGACGCACATCAAGATCAACAGCAGAGGCGATGGCCGGCCAGGGTCCGACAACTCCCTCGTTGTGAGCATGGACATCAATGGCATTATGTACCAGGGGGTGCTCTTTGCCCAACAGGCGGTTCCACGCACGAGCCGCGTCTCATAG
- Protein Sequence
- MMESNNEEEASDPELGEEDSDDVLRRLPVLGGLAAGLAGGLAAAAGGAAAGPGDASSPHSNGDPEEGGDVSGDGEPDQDHDDRPEDHKQNNNNNNNSSANNNSLGSGRSSLERELCRPPSAPQPPPGLTPTAAPFSLPFPFPHPAAAAAFLPPPGATPASAPGGGAAAGAQHRHSASSASSHSSESSTSSQQTWSFEEQFKQVSNELTSSASPAPPSLTNGLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYKLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYADMVQRAPGGGGGGGGGLVGGLPGGVQLSQHPAHPAHPAHPAHPSQMPLSLVTQGGRLLNGNGHYNHNNHHQLLPPPGSGHTPAELENRMAEYMKLISKELRNSAGTPPLSRQGSPPTSPREATMNALEMSRLTLWNLYNNNTLGSVAGLGGVAAGALGAMGAAAAGALGSLGGLAGGLAGPGALAAQAQAQAQAAAAAQAEQAEQQQDHPAHPHQQPAEPQREALNLGVQRQQQREREREQQQRERERERERERERERELVRAQRERERDSQREATIKREPEEAFMPAAKRPALQDRDRDRDREEDAHSPSPVKTAGTHIKINSRGDGRPGSDNSLVVSMDINGIMYQGVLFAQQAVPRTSRVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -