Ffus009096.2
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000466.1:852294-859057[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.19 16 6.9 0.2 6 23 125 144 125 144 0.93 2 22 1 89 4.6 0.3 2 20 149 166 149 170 0.73 3 22 0.0034 0.3 12.4 0.3 2 21 178 197 177 198 0.95 4 22 0.58 50 5.4 6.5 1 23 206 228 206 228 0.96 5 22 1 88 4.6 0.1 6 23 250 269 250 269 0.93 6 22 0.16 14 7.2 1.2 2 23 274 295 274 295 0.85 7 22 0.009 0.78 11.1 1.7 2 21 303 322 302 323 0.93 8 22 1.1 91 4.6 6.6 1 23 331 353 331 353 0.93 9 22 0.34 29 6.1 0.0 6 23 375 394 375 394 0.93 10 22 0.69 59 5.2 0.7 2 22 399 418 399 420 0.80 11 22 0.74 64 5.1 1.5 2 21 428 447 427 448 0.92 12 22 0.65 56 5.3 6.6 1 23 456 478 456 478 0.95 13 22 0.19 16 6.9 0.2 6 23 589 608 589 608 0.93 14 22 1 89 4.6 0.3 2 20 613 630 613 634 0.73 15 22 0.0034 0.3 12.4 0.3 2 21 642 661 641 662 0.95 16 22 0.58 50 5.4 6.5 1 23 670 692 670 692 0.96 17 22 1 88 4.6 0.1 6 23 714 733 714 733 0.93 18 22 0.16 14 7.2 1.2 2 23 738 759 738 759 0.85 19 22 0.34 29 6.1 0.0 6 23 788 807 788 807 0.93 20 22 0.69 59 5.2 0.7 2 22 812 831 812 833 0.80 21 22 0.74 64 5.1 1.5 2 21 841 860 840 861 0.92 22 22 0.65 56 5.3 6.6 1 23 869 891 869 891 0.95
Sequence Information
- Coding Sequence
- ATGGGTTCATTTATACCCTTTATTTCTTACCTCCAAATCATAAATCAACATTATTTAGAAACTAAAACAATTTTGCATGTGCCTCCAAATAACAAGGCATGTAACAACAAGTCAGATGAAGATTCCTGTACGTTGTCATACAAGTGTTGCGGAACTGGTTTCAAAAATGTCTGCGCACATGGAAAACCACAAACTTCACAAACACATCCAGCTTCTTTGGAATGTGGAATTTGCTGCAAATTAATCATAGAAGAGGAAATTTTGGAACACCAAACAGAAACTAACAAGCGAATTGAAAAGAAATGGAAGTGCAAGGAAACCAGCCAGAATGAAATGACAGAAGAGAATATTGAAAGAGGCCCGTACAAGTGTTGTGGGTTTGAATTCAAATATATAAGCAAGCTTAAAGAACACCAAAATACTCTTGCACATCAGGGTTTAGAGGTGTGTAAGATTTGCCAAAAATTATTCAAGAGCGAAGAAATTTTGAAACACAGGGCAGAAATTCATCAGTATGTTGAAGGAAAATGGAAGTGTGAGTCATGCCATATGTTATTTTCTACAAATGGGGATCTAACTCAACATATAAAAGCACAACAGGCCAAGAGTGATTTATACAAATGTACCATTTGCCAAGAGACATTTACTATGAAATGCGCCCATACTTTGCACAGAAAGTCACATGTCTATCAGGAGTCAGATGGTGAACTTTTGTCTCATAAAAGTGAAAAAGGGCGATTGAAGTGTTGTGGCATAGAATTCAAAGCTTTATGTGCCCTTGAAACCCACCAAAGAACATATGCACATCGGGGTTTAGAAAAATGTTTAATTTGCCACGAAGTATTTAAGAAAGAAGAATTTTTGAAACACAGGGCAGAAATTCACCAGGAAGTTGAAGGAAAATGGAAGTGTGAGTCATGTCATAACTTAtttaagacaaaaaaaaatttaatcagGCATGTAAAATCACAACAGGCCAAGAGTGATTTATACAAATGTACCATTTGCCAAGAGACATTTACTATGAAATGCGCCCATACTTTGCACAAAAAGTCACATGTCAATCAGGAGTCAGATGGTGAACTTTTGTCTCATAAAAGTGAAAAAGGGCGATTGAAGTGTTGTGGCATAGAATTCAAAGGTTTATTTGCCCTTGAAACCCACCAAAGAACATATGCACATCGAGGTTTAGAAAAATGTTTAATTTGCCACGAAGTATTTAAGAAAGAAGAAATTTTGAAACACCGGGCAGAAATTCATCAGGAAGTTGAAGGAAAATGGAAGTGTGAGTCATGTCATAAGTTATTTACCAAGAGAAGAATTTTAACCAATCATGTAAAATCACAACTGGCCAAGAGTGATTTATACAAATGTACCATTTGCCAAGAGACATTTACTATGAAATGCGCCCATACTTTGCACTATAAATCACATGTCAATCAGGAGTCAAATGATAAAACAATTTTGCATGTGCCTCCAAATAACAAGGCATGTAACAACAAGTCAGATGAAGATTCCTGCACGTTGTCATACAAGTGTTGCGGAACTGGTTTCAAAAATGTCTGCGCACATGGAAAACCACAAACTTCACAAACACATCCAGCTTCTTTGGAATGTGGAATTTGCTGCAAATTAATCATAGAAGAGGAAATTTTGGAACACCAAACAGAAACTAACAAGCGAATTGAAAAGAAATGGAAGTGCAAGGAAACCAGCCAGAATGAAATGACAGAAGAGAATATTGAAAGAGGCCCGTACAAGTGTTGTGGGTTTGAATTCAAATATATAAGCAAGCTTAAAGAACACCAAAATACTCTTGCACATCAGGGTTTAGAGGTGTGTAAGATTTGCCAAAAATTATTCAAGAGCGAAGAAATTTTGAAACACAGGGCAGAAATTCATCAGTATGTTGAAGGAAAATGGAAGTGTGAGTCATGCCATATGTTATTTTCTACAAATGGGGATCTAACTCAACATATAAAAGCACAACAGGCCAAGAGTGATTTATACAAATGTACCATTTGCCAAGAGACATTTACTATGAAATGCGCCCATACTTTGCACAGAAAGTCACATGTCTATCAGGAGTCAGATGGTGAACTTTTGTCTCATAAAAGTGAAAAAGGGCGATTGAAGTGTTGTGGCATAGAATTCAAAGCTTTATGTGCCCTTGAAACCCACCAAAGAACATATGCACATCGGGGTTTAGAAAAATGTTTAATTTGCCACGAAGTATTTAAGAAAGAAGAATTTTTGAAACACAGGGCAGAAATTCACCAGGAAGTTGAAGGAAAATGGAAGTGTGAGGAGTCAGATGGTGAACTTTTGTCTCATAAAAGTGAAAAAGGGCGATTGAAGTGTTGTGGCATAGAATTCAAAGGTTTATTTGCCCTTGAAACCCACCAAAGAACATATGCACATCGAGGTTTAGAAAAATGTTTAATTTGCCACGAAGTATTTAAGAAAGAAGAAATTTTGAAACACCGGGCAGAAATTCATCAGGAAGTTGAAGGAAAATGGAAGTGTGAGTCATGTCATAAGTTATTTACCAAGAGAAGAATTTTAACCAATCATGTAAAATCACAACTGGCCAAGAGTGATTTATACAAATGTACCATTTGCCAAGAGACATTTACTATGAAATGCGCCCATACTTTGCACTATAAATCACATGTCAATCAGGAGTCAAATGATGTAACAGCCAGTGAACATTTGTCTTAG
- Protein Sequence
- MGSFIPFISYLQIINQHYLETKTILHVPPNNKACNNKSDEDSCTLSYKCCGTGFKNVCAHGKPQTSQTHPASLECGICCKLIIEEEILEHQTETNKRIEKKWKCKETSQNEMTEENIERGPYKCCGFEFKYISKLKEHQNTLAHQGLEVCKICQKLFKSEEILKHRAEIHQYVEGKWKCESCHMLFSTNGDLTQHIKAQQAKSDLYKCTICQETFTMKCAHTLHRKSHVYQESDGELLSHKSEKGRLKCCGIEFKALCALETHQRTYAHRGLEKCLICHEVFKKEEFLKHRAEIHQEVEGKWKCESCHNLFKTKKNLIRHVKSQQAKSDLYKCTICQETFTMKCAHTLHKKSHVNQESDGELLSHKSEKGRLKCCGIEFKGLFALETHQRTYAHRGLEKCLICHEVFKKEEILKHRAEIHQEVEGKWKCESCHKLFTKRRILTNHVKSQLAKSDLYKCTICQETFTMKCAHTLHYKSHVNQESNDKTILHVPPNNKACNNKSDEDSCTLSYKCCGTGFKNVCAHGKPQTSQTHPASLECGICCKLIIEEEILEHQTETNKRIEKKWKCKETSQNEMTEENIERGPYKCCGFEFKYISKLKEHQNTLAHQGLEVCKICQKLFKSEEILKHRAEIHQYVEGKWKCESCHMLFSTNGDLTQHIKAQQAKSDLYKCTICQETFTMKCAHTLHRKSHVYQESDGELLSHKSEKGRLKCCGIEFKALCALETHQRTYAHRGLEKCLICHEVFKKEEFLKHRAEIHQEVEGKWKCEESDGELLSHKSEKGRLKCCGIEFKGLFALETHQRTYAHRGLEKCLICHEVFKKEEILKHRAEIHQEVEGKWKCESCHKLFTKRRILTNHVKSQLAKSDLYKCTICQETFTMKCAHTLHYKSHVNQESNDVTASEHLS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -