Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000219.1:2014308-2018156[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0013 0.11 13.8 2.0 3 23 332 353 331 353 0.94

2 15 0.065 5.6 8.4 0.0 1 20 359 378 359 380 0.95

3 15 0.12 11 7.5 2.1 1 23 415 437 415 437 0.96

4 15 5.3 4.5e+02 2.4 1.7 1 19 443 461 443 463 0.86

5 15 6.4 5.5e+02 2.1 5.6 2 20 508 526 508 528 0.92

6 15 3.7 3.2e+02 2.9 5.6 2 23 632 653 631 653 0.94

7 15 0.79 68 5.0 9.4 1 23 798 820 798 820 0.98

8 15 0.00085 0.073 14.3 0.9 1 23 826 848 826 849 0.95

9 15 0.00022 0.019 16.2 4.2 2 23 885 906 884 906 0.97

10 15 0.002 0.17 13.1 0.5 2 23 924 945 923 945 0.93

11 15 5.8e-05 0.005 18.0 0.4 3 23 995 1015 993 1015 0.96

12 15 0.002 0.17 13.1 0.4 2 23 1044 1065 1043 1065 0.94

13 15 0.57 49 5.4 6.4 2 23 1088 1109 1087 1109 0.95

14 15 0.015 1.3 10.4 0.8 1 23 1115 1138 1115 1138 0.96

15 15 0.038 3.3 9.1 2.7 1 22 1145 1166 1145 1169 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0013	0.11	13.8	2.0	3	23	332	353	331	353	0.94
2	15	0.065	5.6	8.4	0.0	1	20	359	378	359	380	0.95
3	15	0.12	11	7.5	2.1	1	23	415	437	415	437	0.96
4	15	5.3	4.5e+02	2.4	1.7	1	19	443	461	443	463	0.86
5	15	6.4	5.5e+02	2.1	5.6	2	20	508	526	508	528	0.92
6	15	3.7	3.2e+02	2.9	5.6	2	23	632	653	631	653	0.94
7	15	0.79	68	5.0	9.4	1	23	798	820	798	820	0.98
8	15	0.00085	0.073	14.3	0.9	1	23	826	848	826	849	0.95
9	15	0.00022	0.019	16.2	4.2	2	23	885	906	884	906	0.97
10	15	0.002	0.17	13.1	0.5	2	23	924	945	923	945	0.93
11	15	5.8e-05	0.005	18.0	0.4	3	23	995	1015	993	1015	0.96
12	15	0.002	0.17	13.1	0.4	2	23	1044	1065	1043	1065	0.94
13	15	0.57	49	5.4	6.4	2	23	1088	1109	1087	1109	0.95
14	15	0.015	1.3	10.4	0.8	1	23	1115	1138	1115	1138	0.96
15	15	0.038	3.3	9.1	2.7	1	22	1145	1166	1145	1169	0.90

Sequence Information

Coding Sequence: ATGGCGACAGGTTATTCTCGTTCTCAAAATTATAACTCATCTTGCCGGCTTTGCCTAACGAATACGTTGAAGCTTGTACCTATCTTCGGAACACCAGATGGTGGTCTAAGTCAGAAAATTTTTGCCTGCCTATCTATCAAGGTCTCTGAATATGATGGTCTCCCCAAGTGTATTTGCCATAAATGCGAATGCCAAGTTAACGTTTGGCATTATTTTAAAGAAGAATGTGAACTCACTCAAAAGAAGTTGAATGAGTGGCAGGGATATTCCCACTCTTCTTCAATATATGTCTCTGAAAGTAGTGAAAATGTTGATGAGGCTGTTTACATTAAGCAAGAACCAGAAGATGATGTTATGCATGTTGAACATCATATCAATCATAATGTTACCTTTGATGCCCATATTGAAAACTCACATAATCTTAATGAATGTAGTTCTAATGAAGCAGTTGTGGAAAGCTACTCTGCTTCTGAAAATCAAGATGAGACTAACAGTCCCTTCACTCTCGTCATTTCTGGGACAACATCTGTGGCTCCTGAGGAGAACTCACCAAGAAACGTACTGGATTCAGATGTCAAGGACAGCTGTGATATTGAGAATACAGGGAATTCTAACTCTTTTTGTGATAGAGAAACTACCGATGTTGTTTGTGTTGGGACAAGCAAACCAGAACGCACCATCATAGAAGTTCACTTAGATGATTCTAATGATGCACGAGCATCTCTGACAACAAACTCAATACTTGTTGATTCTAAAATTGACAATGCCACTGGAATTTCTTCCACCTTACCAGTATCAGCAGATGACAGTAAAGAACCCTTTCCAATCAAGAAAGAACCTTTGGACATCACAGATAAACCGGAGTCTAAACCAAAAAATATCATGTCGCTTCTTGCAGAGCCAGTCACAAAACCAACAACTGTGTTATATAATTCCCAGAGTTTTGATCTACCAAAGATTGAGAATCATATTTTTGATGAGAAAACAAACTTCTGCAAATTCTGTAGTAAGtcatttcaaaatatttcaaatctTTGGAGGCATGTCAAAGATAAACATGCTAAAGACAATCCATTCCGGTGTCCTGCTTGCCGCAAGATTTTTCCAGGACGAAGGGAGCTTGTAGCTCATCGTGTTAAAACTGTCAGCAAGTTTTGTAGAGCTGGAAGGGTACCTAATTTGGATTTTCCTCACTCATCTGTTATAACTCACTCTGAAATAACTAATGGAAAGGTTGGAAGATATGAATGCAGTCATTGTAATCACAAATTTGGCCAGTTAAATGCCACATTGGCCCATGTGATAAgacacactggagagaaaccattCTTTTGCTATAAGTGCAACAAAGACTTCCATTTAAGAAAGTCGGCTTGGAAACATGTTGCCGGATGTCCTGGTAAAATTGAAAGCCTGACAGTTGTTCCCGTGGGGAAACTAAAACTTTTACCAAAACTATCAAAAGTTTTGAAGGGACCAAAATTGAAGTCCAAAGTTAATCCAACTCTGATCAAAGATAATACTTGTTCAAAGTGCCAAAATACTTTTGAAAATGCTACTGAATTTTGTAATCATTCGTGCAAAATCTGCATTTCTTGTTCAAAATTCATTCCAATAGAAATGTTACAAAAGCACTTTTCTCTCTGTTTTAAGGCTTCTGGAAGTGAAACTAAGTCTGAAATTTCTACTTGCAGCACAAGCTCTGCTGCTTCAAGTATTTCAGATCTTGAAACACgtgtgaaaaatgaagaaacaaaGCAAGATAATGTTGAAGAGAGCACAtcaaaagttaagaaaaagaggaaatcaCATTTCAAAATCACTCAGAAAGTGGATCTTTCTCGTCAGGAACTATGGGCTAAAAATCATGATAAAGatggaaatttaattttaaattgcCATATATGTCTTTTAAAGTTTAGCAGCCGGAAGAGCCTCTATTGTCATCTTCTCAAACATTCCTCTAAAGCCTTTAAATGTAAGTTTGAGCAGTGCAGTTCCAGTCATTTGATGTGGAGCATGCGAGCCTCTTTTGAAGCACACATGTTAAACGTTCATGGAATGTCTCAGAGTGATTTAAAGGAAGAATTCACATCAAATGCTGAAAGAACCACTGAACCCACTGTGTCATCAAAGTCCAAGCCGCCTGGAAAATATTCTGCAGTGAAGTTAAAATGTGATACATGTTTCAAATTGTGCAGCTCTGTTTCATctttaaaatttcacaaacttACCCACAAGAAAATTACGTGCAAGAAATGTGAAATAACTTTTCCTGCCTCAATGGAGAGAGCTCACGTTTGTCTACCAAAAGTCAAAGTAGTCCTGTTAAGTGATCAACCTATCCCAGATAATCAACCACCAATTCTTCCTGAAAAACGCCCAAATCAATATACTTGCCATCTGTGCAAAAAGAAATTTCATACAAAGAAGATTTTGTATCAGCATAAGAAGATGCAtattaaaatgaaaatatataAGTGTAATGTATGTGAGAACTCGTATAGTGACTCTGCAGCGCTACAAAGTCATAAAGAGTTGCACCATCCATATGAGTTGGATACACCTTGTGTTAAAGATGAAATGAATAAAAGCCCTGAAGGAACAGGAAAACAGATCAAGGAAGAAACGAAAACTACTGATAAACAATGGAAATGTACCAGATGTTCAAGAAGTTACTCACATAGGGTGACTTTGCAGCGGCACATGAAATTACACAGATGGCGAAAGCCTAAGAACCCGTCTGCTCCGAATGATCCTGATAGATTGTACTGTGGTCAGTGTAACAGAACCTTTGAAAGCAAGGGTAGCTATAACAGCCATCAAGGGTGGCATTCTCGACAAGTGCATTCAACTGAGTCCTCTGCCACTCCCTCAAAAGTAGAGCCTCCTGTATCCATCCAGAACATTGGTGTAACTACCCAAAGTGTAGAAGGTAAGAGTATTTCTTCATCCTTGTCACTGTCTTTTGATACATTTGGCTGTGATATTTGTTCCAAGAAATTTGCCTCTCAAAGGAATTTGAATATTCACATGGTATATCACAGAAAAGGTAAATCAACAACTGTTGAAGATTCCAACAGTAAGGGTGTGGTGCAAGATGTTACTGAGGGTGATAAGCTTACTTTAAAATGTGAGATTTGCGCCCAGACTTTCTCTGATTTATCTGAGTTTACCTCTCACTCAACTGTGCACACTGCCAGTGACACCTCAACTGTGAAATCTGAAGTGTTGGTTGAGGCACCCAAACCAGAGCAGTTACATTGTAAATTATGCAACAAAGAATATAGATGTAAAAAAAGTTTGAAGTATCACATGATGGGCCACTCTGGAGAAAAGCCATATAAATGTAAAAGCTGTTCCAATCAATATAGTAATCCTAATGCCTTGGCAAAGCATGAAAGAGATAGACATACTCCAATCTTACGTCCATTTTCCTGTAACAGGTGCAAAACTAGTTTCATTCTAAAGGAAGATCTCCTTGCTCATCGAGAGAAATGCACCCATTAa
Protein Sequence: MATGYSRSQNYNSSCRLCLTNTLKLVPIFGTPDGGLSQKIFACLSIKVSEYDGLPKCICHKCECQVNVWHYFKEECELTQKKLNEWQGYSHSSSIYVSESSENVDEAVYIKQEPEDDVMHVEHHINHNVTFDAHIENSHNLNECSSNEAVVESYSASENQDETNSPFTLVISGTTSVAPEENSPRNVLDSDVKDSCDIENTGNSNSFCDRETTDVVCVGTSKPERTIIEVHLDDSNDARASLTTNSILVDSKIDNATGISSTLPVSADDSKEPFPIKKEPLDITDKPESKPKNIMSLLAEPVTKPTTVLYNSQSFDLPKIENHIFDEKTNFCKFCSKSFQNISNLWRHVKDKHAKDNPFRCPACRKIFPGRRELVAHRVKTVSKFCRAGRVPNLDFPHSSVITHSEITNGKVGRYECSHCNHKFGQLNATLAHVIRHTGEKPFFCYKCNKDFHLRKSAWKHVAGCPGKIESLTVVPVGKLKLLPKLSKVLKGPKLKSKVNPTLIKDNTCSKCQNTFENATEFCNHSCKICISCSKFIPIEMLQKHFSLCFKASGSETKSEISTCSTSSAASSISDLETRVKNEETKQDNVEESTSKVKKKRKSHFKITQKVDLSRQELWAKNHDKDGNLILNCHICLLKFSSRKSLYCHLLKHSSKAFKCKFEQCSSSHLMWSMRASFEAHMLNVHGMSQSDLKEEFTSNAERTTEPTVSSKSKPPGKYSAVKLKCDTCFKLCSSVSSLKFHKLTHKKITCKKCEITFPASMERAHVCLPKVKVVLLSDQPIPDNQPPILPEKRPNQYTCHLCKKKFHTKKILYQHKKMHIKMKIYKCNVCENSYSDSAALQSHKELHHPYELDTPCVKDEMNKSPEGTGKQIKEETKTTDKQWKCTRCSRSYSHRVTLQRHMKLHRWRKPKNPSAPNDPDRLYCGQCNRTFESKGSYNSHQGWHSRQVHSTESSATPSKVEPPVSIQNIGVTTQSVEGKSISSSLSLSFDTFGCDICSKKFASQRNLNIHMVYHRKGKSTTVEDSNSKGVVQDVTEGDKLTLKCEICAQTFSDLSEFTSHSTVHTASDTSTVKSEVLVEAPKPEQLHCKLCNKEYRCKKSLKYHMMGHSGEKPYKCKSCSNQYSNPNALAKHERDRHTPILRPFSCNRCKTSFILKEDLLAHREKCTH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -