Ffus012988.1
Basic Information
- Insect
- Frankliniella fusca
- Gene Symbol
- -
- Assembly
- GCA_029379305.1
- Location
- JAHWGI010000970.1:1412072-1422015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.4 1.2e+02 4.2 2.1 1 22 217 238 217 241 0.90 2 14 8.5 7.3e+02 1.7 0.3 3 20 257 274 257 274 0.89 3 14 0.04 3.4 9.1 0.1 2 22 301 323 300 326 0.89 4 14 0.68 58 5.2 0.0 1 23 381 405 381 405 0.88 5 14 0.085 7.3 8.0 0.7 2 23 427 449 427 449 0.94 6 14 0.083 7.1 8.1 0.6 1 23 454 477 454 477 0.94 7 14 0.0098 0.84 11.0 1.5 1 23 548 569 548 569 0.98 8 14 0.0029 0.25 12.7 2.5 1 23 575 598 575 598 0.90 9 14 0.006 0.52 11.7 3.6 3 23 680 701 678 701 0.92 10 14 0.21 18 6.8 0.6 3 23 708 730 706 730 0.91 11 14 0.11 9.8 7.6 4.4 1 23 737 759 737 759 0.96 12 14 0.00011 0.0092 17.2 4.0 1 23 765 787 765 787 0.98 13 14 0.00085 0.073 14.3 4.0 1 21 793 813 793 818 0.93 14 14 4.2 3.6e+02 2.7 0.1 1 23 824 853 824 853 0.78
Sequence Information
- Coding Sequence
- ATGGCCTCTGCGCCaatgccgccggccggcgcgggcggccaggACGATGACGAAGACAGCCACTTCTGCCTGCGCTGCCGGCAGACCATCGAGGGCCTCGAGCTCGGGGGCAGAGACCAGGAGAGCGCGAGCGAGGCCACGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCTCCAGGCCTCGCCCCAGGCCTCGCCCCCCGGCACCAGGAGCCTGGCGGTGGGCTCCGTGGCCGCCGACCTCGTCCTCGACAACATCGAGGCCGTGGTGCACCAGTCACCCTTCCAGTGTGGCCTCTGCAAGTTCTATTGCAACTCCTCAAGTGTGTTCAGAGCGCACTGGTCCTCGGAGGAACATCGCCAACAGGACAGGAAGGTGACTGCTGTTCCTGGTCAGTATTGGTGTTCGCCGTGCGAGATAAGCTGCACCTCAAGTGATGACATGGAAAACCATCTCTGGAGTGACGATCACAGGGAAGTGGAGGCTGCTGTCAACAGAAGTGTTGCTGTAGTAGTCACAAGAAGAACATCATTACGATGCAAGGCTATTGGCTGTGGCGCCGAGTTCCGCTACAACGTCCAGCTCGGGCGGCACGAGCGGCTGCGCGGCCACCAGGTTCCCCAGGACGCCTCGACGGCGGGCGACCGCTACCAGGCGCGCTTCCGGTGCGCGGTCAgggcgtgcggcgcgctgcggcgctcgcggcccgcgctgcagaaGCACGTCCTGGtggcgcaccgcggcggcgcctcctcctcggcggcgggctgctgcttcTACTGCGGCGTCTGCAAGCTCGAGTTCCcgtcggccggcgcggccgcggagcaCCGCCTGACCCGGGGGCACCGGGACGCGGCCCGCGAGCGCAAGGAGCggcgcctgcagggcgcgcaggccggGGTCCAGCGGCGCTGCCCGCACTGCCGCATGCCCTGCCGGGGGGTGGCCGAGCTGCGCGCTCACCTGCAGGCGGAGCACCCCGACCGCCAGCACCGGTGCGCGCTGTGCGGCCTCGGCTTCACGCTGTCGCAGGAGGTGTCCAGGCACTTCCGCGACGTgcaccgcggccgcccgccgacccccgccgccgcgcccgcggccggcaccggcactcacggcggcggcggcccgctcgTGCCCCCGGAGGACGAGGCGCCGCCCTTcacctgcgcgccgtgcgggTTCTCCACCGACTCCAGGGCGGAGATGGCCTTCCACCGGGTGCTGCACGGAGCAGCAGGGAGcacgcgcccggcgcccgcgccgcccctgtaCCGGTGCCCGCTCTGCTCCAAGCTGTGCCGCAAGCAGGCCCTGCGCGCGCATCTCAACGTGCACACCGGCGAGCGGCCCTTCCGCTGCGGCCAGTGCGACAAGAGTTTCAGTCGCAAGGACTCGTGCCTCTCCCACGAGCTGAGCGCGCACGCCCCCGGggcctccaccgcctccacccacGCCATCTCCcacgacgagcaggaggagcgccGTCTCCAGAGCGCTGTCTCGTCCATCGTGGACgtgggcgcgcgcccggcgttGCCTCCTCCACCCGCCTCGGCGCCGCTCGTGGACGGTGGCGTTGTCGGGGTGGACTGGGGCACTGGcactgccgccgcctccgccgtctTCAGCAAGGAGTCGGACGAGTCTCGCGAGCGGGCGCATCTCTGTGACGTGTGCGGAAAGTGCTTCCTCACCAAGACCACGCTGCGCCAGCACCAGGTGTCCGTGCACGGCGTCAAGCCCCTGGCGTGCTCGTGGCCGGGCTGCGTCATTCGCGTGCGGTCGCACGCCGAGCTCCGCGCGCACCACAAGACCCacacgggcgaggcgggggccttCGAGTGCCAGACGTGCCACTTCCACGCCAAGACCAAGGCGCTGCTCAAGAGGCACGAAACGATCCACAGCGGTGAAAAGCAGTTCAAGTGCCCGCACTGCGACTTTGCAACTCGGGTCAGTTCCCACCTCGTCCGCCACCGACGCCTGCACACGGGTGCCAAGCCCTTCCGCTGCCCGCACTGCAGCTACCGCTGCAACGACCCGGAGAACCTGCGCAAGCACGTGCTCAAGACCAACAAGCACCCCGGCAAGTGCCTGTACGAGTGCCGGTTCTGCGACGGGGCCGCGGACAGCGTCTTCGCGACCAACAAGGCGAGCGACTTGCGCGCGCACCTCGCCCGCCAGCACGCCGACAAGTTCCGCagcgcctcggccgccgcctcctACGTGGCCGGCATCTACGACAAGGCCGCGGACCCGGACCCCGCGCAGGTCGAGCGCGTCGTGCAACCGAAGCCGAGGAAGAGATCGAAGGTGGATGAGAAGGACGCGAAGGGGATGTTGGACCCTTcgttggggccggggccggggccagcagcgTCAGGTGCTCCCGCCATCGCCCCCCGTCCGGCCGCGGAGGAGGACCCGCCCACCTCACTGCTCCCCAAACACACTCTGCTCGACGGCGATCTCTTTCCCGCCATAGTTGTGGACACAGACTTACCCGGGGACGTGGTCTACGTGCAGCTGGTGGACAACGACGAGCACATCGTGGTGCTGGAGAACTAA
- Protein Sequence
- MASAPMPPAGAGGQDDDEDSHFCLRCRQTIEGLELGGRDQESASEATLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASLQASPQASPPGTRSLAVGSVAADLVLDNIEAVVHQSPFQCGLCKFYCNSSSVFRAHWSSEEHRQQDRKVTAVPGQYWCSPCEISCTSSDDMENHLWSDDHREVEAAVNRSVAVVVTRRTSLRCKAIGCGAEFRYNVQLGRHERLRGHQVPQDASTAGDRYQARFRCAVRACGALRRSRPALQKHVLVAHRGGASSSAAGCCFYCGVCKLEFPSAGAAAEHRLTRGHRDAARERKERRLQGAQAGVQRRCPHCRMPCRGVAELRAHLQAEHPDRQHRCALCGLGFTLSQEVSRHFRDVHRGRPPTPAAAPAAGTGTHGGGGPLVPPEDEAPPFTCAPCGFSTDSRAEMAFHRVLHGAAGSTRPAPAPPLYRCPLCSKLCRKQALRAHLNVHTGERPFRCGQCDKSFSRKDSCLSHELSAHAPGASTASTHAISHDEQEERRLQSAVSSIVDVGARPALPPPPASAPLVDGGVVGVDWGTGTAAASAVFSKESDESRERAHLCDVCGKCFLTKTTLRQHQVSVHGVKPLACSWPGCVIRVRSHAELRAHHKTHTGEAGAFECQTCHFHAKTKALLKRHETIHSGEKQFKCPHCDFATRVSSHLVRHRRLHTGAKPFRCPHCSYRCNDPENLRKHVLKTNKHPGKCLYECRFCDGAADSVFATNKASDLRAHLARQHADKFRSASAAASYVAGIYDKAADPDPAQVERVVQPKPRKRSKVDEKDAKGMLDPSLGPGPGPAASGAPAIAPRPAAEEDPPTSLLPKHTLLDGDLFPAIVVDTDLPGDVVYVQLVDNDEHIVVLEN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -