Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010001279.1:608312-612484[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.58 50 5.4 0.6 3 19 176 192 174 194 0.94

2 16 0.00038 0.033 15.4 0.2 2 23 226 247 226 247 0.96

3 16 0.00045 0.038 15.2 0.8 1 23 279 301 279 301 0.98

4 16 0.0043 0.37 12.1 1.8 1 23 372 394 372 394 0.97

5 16 0.48 41 5.7 1.5 2 23 642 663 641 663 0.95

6 16 0.003 0.25 12.6 0.8 2 23 670 692 669 692 0.93

7 16 2.5 2.1e+02 3.4 0.1 3 23 700 721 698 721 0.92

8 16 1.3 1.1e+02 4.3 2.6 1 23 728 750 728 750 0.94

9 16 0.00011 0.0093 17.1 0.4 1 23 756 779 756 779 0.95

10 16 0.014 1.2 10.5 2.1 2 23 784 805 784 805 0.97

11 16 0.00072 0.062 14.6 4.3 1 23 812 834 812 834 0.96

12 16 0.33 29 6.2 4.1 1 20 840 859 840 862 0.94

13 16 6.1e-05 0.0052 17.9 0.7 1 23 868 890 868 890 0.98

14 16 2.1e-05 0.0018 19.4 4.8 1 23 896 918 896 918 0.99

15 16 9.9e-06 0.00085 20.4 0.9 1 23 924 946 924 946 0.98

16 16 0.17 15 7.1 3.6 1 23 952 975 952 975 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.58	50	5.4	0.6	3	19	176	192	174	194	0.94
2	16	0.00038	0.033	15.4	0.2	2	23	226	247	226	247	0.96
3	16	0.00045	0.038	15.2	0.8	1	23	279	301	279	301	0.98
4	16	0.0043	0.37	12.1	1.8	1	23	372	394	372	394	0.97
5	16	0.48	41	5.7	1.5	2	23	642	663	641	663	0.95
6	16	0.003	0.25	12.6	0.8	2	23	670	692	669	692	0.93
7	16	2.5	2.1e+02	3.4	0.1	3	23	700	721	698	721	0.92
8	16	1.3	1.1e+02	4.3	2.6	1	23	728	750	728	750	0.94
9	16	0.00011	0.0093	17.1	0.4	1	23	756	779	756	779	0.95
10	16	0.014	1.2	10.5	2.1	2	23	784	805	784	805	0.97
11	16	0.00072	0.062	14.6	4.3	1	23	812	834	812	834	0.96
12	16	0.33	29	6.2	4.1	1	20	840	859	840	862	0.94
13	16	6.1e-05	0.0052	17.9	0.7	1	23	868	890	868	890	0.98
14	16	2.1e-05	0.0018	19.4	4.8	1	23	896	918	896	918	0.99
15	16	9.9e-06	0.00085	20.4	0.9	1	23	924	946	924	946	0.98
16	16	0.17	15	7.1	3.6	1	23	952	975	952	975	0.96

Sequence Information

Coding Sequence: ATGTCAAGAAGACGAAATTCGAGAAAGGTGAACAGGAAGGTTGATGAAGACATTTCTCCTGAACTTCTCAAGGAAAGTTGTTGCTTTATATGTGATCGACCAGTCAAGAAAAATGGAGTACAAATTGTTTTAGGACGTACCCCATATTCAAATGTTGGCCTTCCAGCAAAGATTGGACAACTCATAGGTGACAAGTTCATGGTGGTTGTTGGAGAAGCAGACATTATGTGTGCAAGATGTTCATCTTTAATAAGTCATCTTGACAAACTTGAGACGGATGCTCAGACTGTGAAACAAACCCTCACCAGTTTCATAGCATCTAAATACCAACTAAATCATAATGAAATTTGTGCCAAAATGGATGATAGCAAAAGTTATTGTGATTCCATGTCTGGACAGCCTGGAGAGACAGATCATAATAGTTCTGACCTATGTTCTGTTCAAGTGATGGgaacaaataataaaagaaagTCTGATCTTGTGAGCTTACTTTCTTGTAAGAGGAAGAAATCTCTATCGACAAATTGTGAGAATTGTAATTTCTGTTCAGAAGACAAAGACGCACTGCAAATTCATTCTGCATTGTGTTTGAATCGAAGTAACCGATGTTCAGATTGTGGTGTCATCCTCACTGACATTGAAACCAAATCAACTGGAAGGTTTGCATTTTTAGGAACTTGCAATGTTTGCACAACAAATTTTGATGATGAAGGAAACCTGTCAAGGCATATGGCATTACATACTAAGCATTTTAATACATGTAATGCATGCAATTATACAAGTTTAAAAGATGATATTTTACTTAAACATCTTTTTACGCATTGTGAACAAATTTATCAATGCTCTCTATGTAAAGCAAGCTTCAATCAGAAGGCAAAGTTAGATAGTCATCTAATCAAGCACTTGATTCAAGATAAATGTTTAGATTGTTCTATTGCAGCATCTTCCCAGGCTAAATTATTAAGTGAAGGTGAACTCGCATTGGCCTGTTTGGGTGAGGAAACCCAAAGTAACCGTAATCACATTGacttaaaagaaaatattgacAGTCAATACATGGAATCTTTGATACGTGTTGACAGTTTTGACTCTGATGGGAGTAACATAGAATTCCATTCTTGTCCGAATTGTGGTCTGACTTTCCTGAATAAACTGCTCTTCACGGAGCATATGAAGATGCATAATAAAAATGGAGATGATATCAGTGAAGCACATGATGTTCTCAAAAGTTCCACAGTATCCGTAAATGGAGATTGTTCAATAGATGATGATCTGGAAGATTTGTTTGAAAAGCTTCATGCTGAAACAAGTTCCTCTGTCCAAGATATTCCTGAAAAAAGTTGCTGTGTGAGTGATCACACCCCGAGTATGCCAAGCAGCATGCACAACTCCAGTGGGACTCTCGAATGTGGAACACCCATCTGTGGATCTGACAACATTGAATCAAGAAATGATATGCCCGATGTGTCCTCAAAACTCATAGCCAAAAAAGACTCACCAGTGCTTgatcaaaatttgttaagtagTAGCTTAGGCTCTTTAGGATTTACTTCATTTGAGACTTCTCCCATAGTAAAGGAAAAAAACGATAACAGTCAAATAACAAATTTGTTGGGTTCAGCTGAGCAGCAAAGTTACATTTTCATCAGTAATACTCTTGATGGTCTTTCAGATTGTCAGTCTCagaATGGAGTAGTGCTACATAATGCTACAATAGATCCAAATAATGGGAGCATTCAGTTGATTCCATTTGTAATTAATGACTCAGTTGATTCAACTCAACAAGGAGGTGGTATTCTTGAGAGTGATCCTAGCAATCTAAATGAAGATAAGATATTTGAGCAGAATTTTTGCAAGATGAAGCCAGAACCAGAACTGGCTCTAAACAAGCTGGAAGAAGGAAATTCTGAAATGTGTGTTCTTTCATGTGATCATTGTAATTTCCAAACTTCAATTGAACTTGTGTTAAAGAGGCATATGAAAGTACACCAAGAAAACCTGGTTCAAAAGTGCTCCATATGTAATAGGGTGTTTTCATCAACACAACGCCTGCTTACTCATATTGATTTGCGCCACAAAAATGCTGGGCCCCTGGACTGTCCATCCTGTTCTCAGGAATTGAACAATTCTCTACTCTTAAGGGAACATTTAGCACAAGAACATTCAGTGGGTAAGCGTACCTTTTCTTGTCCCTTTTGTGCTCAAATGTTTCCAACTAGGAAGTCATGCAGGAGTCATGAAGAAAGtcattctgaaatttttaaattttcatgtaAAATTTGTTTGAAAAAGTTCTCTAGTGAAGATGATTTGAATGACCATGTAAAATGGGACCATGACACATCTGGTCAATGTCGCTATTGTGGTAAAAAAATTGATAAACCAAAAGCTTTAAAACATCATGAGCTTCGTCACACTCAGGAATCCAACCATCACCAATGCCAAGAGTGCAAACGAATCTTCAAAACTAAAACTGGCCTAAGACATCATGCAGCATCTCATACAGGGCAATTTAAGTATTGTTGTGATTTCTGTGGTAGAGGATTCATGTCACGGATGATGCTGGAGGAGCATCGTAGCTGTCACACGAAAGAAGAAAGATATGTTTGTGATGTTTGTGGCCAaaagtttacatttcaaagCACGTATTGGATACATAGGAAGTGGCATGAAAATCCGTATCCTTACAAATGCAGCTTTTGTGGACGTTTCTTTAAACATTCATCTCTACTAGCAGTTCACAAACGAAAGCATACAGGGGAACGCCCATACAAGTGTTCGCATTGCCCATTAACGTTTCCTGTTAGCGGAACTCTGAAACGACATATGATTTTGCACACTGGTATTTACCCCTTCAACTGCAATTCTTGCAAGCGAGGGTTCACAGCCAGACATAAATATACATCTCACTTGGAAAAAgtgCATGGAGCTAAAGACTTAGAAAACAAAGAAAGTTCGGAAAATGATTTGAAATTGGGCATTTCtggaaaagaaatatcaaatgGCCTAAAGGAATGGGAGTTTGATGCAGAGAGCTATCAAACATTAGATATGGTAGAGTCACCAGGAGTTCGTAGCAGAGATCCTTTGATAAGTGACCAAATCATGCAATCTAGAGTTGTTGAAATTGTATTAGATGAATCTTATCAACCAGTAGCCACTGTTAcacttggtggtggtggtgagacaATCAtacctgaaatttgGAACTATTTTAACATCAGCATCAATCCCCAACATTTAATGAAGGCTGAGTTTTCTGGTTATTAA
Protein Sequence: MSRRRNSRKVNRKVDEDISPELLKESCCFICDRPVKKNGVQIVLGRTPYSNVGLPAKIGQLIGDKFMVVVGEADIMCARCSSLISHLDKLETDAQTVKQTLTSFIASKYQLNHNEICAKMDDSKSYCDSMSGQPGETDHNSSDLCSVQVMGTNNKRKSDLVSLLSCKRKKSLSTNCENCNFCSEDKDALQIHSALCLNRSNRCSDCGVILTDIETKSTGRFAFLGTCNVCTTNFDDEGNLSRHMALHTKHFNTCNACNYTSLKDDILLKHLFTHCEQIYQCSLCKASFNQKAKLDSHLIKHLIQDKCLDCSIAASSQAKLLSEGELALACLGEETQSNRNHIDLKENIDSQYMESLIRVDSFDSDGSNIEFHSCPNCGLTFLNKLLFTEHMKMHNKNGDDISEAHDVLKSSTVSVNGDCSIDDDLEDLFEKLHAETSSSVQDIPEKSCCVSDHTPSMPSSMHNSSGTLECGTPICGSDNIESRNDMPDVSSKLIAKKDSPVLDQNLLSSSLGSLGFTSFETSPIVKEKNDNSQITNLLGSAEQQSYIFISNTLDGLSDCQSQNGVVLHNATIDPNNGSIQLIPFVINDSVDSTQQGGGILESDPSNLNEDKIFEQNFCKMKPEPELALNKLEEGNSEMCVLSCDHCNFQTSIELVLKRHMKVHQENLVQKCSICNRVFSSTQRLLTHIDLRHKNAGPLDCPSCSQELNNSLLLREHLAQEHSVGKRTFSCPFCAQMFPTRKSCRSHEESHSEIFKFSCKICLKKFSSEDDLNDHVKWDHDTSGQCRYCGKKIDKPKALKHHELRHTQESNHHQCQECKRIFKTKTGLRHHAASHTGQFKYCCDFCGRGFMSRMMLEEHRSCHTKEERYVCDVCGQKFTFQSTYWIHRKWHENPYPYKCSFCGRFFKHSSLLAVHKRKHTGERPYKCSHCPLTFPVSGTLKRHMILHTGIYPFNCNSCKRGFTARHKYTSHLEKVHGAKDLENKESSENDLKLGISGKEISNGLKEWEFDAESYQTLDMVESPGVRSRDPLISDQIMQSRVVEIVLDESYQPVATVTLGGGGETIIPEIWNYFNISINPQHLMKAEFSGY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -