Basic Information

Insect: Frankliniella fusca
Gene Symbol: -
Assembly: GCA_029379305.1
Location: JAHWGI010000289.1:2575067-2581286[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.4e-05 0.0029 18.7 1.7 1 23 257 279 257 279 0.96

2 14 2.1 1.8e+02 3.7 0.1 2 21 287 306 286 307 0.90

3 14 0.28 24 6.4 1.7 2 23 313 335 312 335 0.91

4 14 0.14 12 7.3 7.3 2 21 510 529 509 531 0.93

5 14 0.48 41 5.7 0.2 2 21 539 558 538 559 0.94

6 14 2e-05 0.0017 19.5 1.3 1 23 1068 1091 1068 1091 0.98

7 14 0.014 1.2 10.5 0.6 2 23 1105 1126 1104 1126 0.96

8 14 3.1e-05 0.0027 18.9 1.6 2 23 1133 1155 1132 1155 0.97

9 14 0.0055 0.47 11.8 3.3 2 23 1162 1184 1161 1184 0.95

10 14 0.081 7 8.1 0.6 1 20 1194 1213 1194 1215 0.94

11 14 2.1e-06 0.00018 22.5 0.5 1 23 1223 1245 1223 1245 0.97

12 14 0.00043 0.037 15.3 3.9 1 23 1251 1273 1251 1273 0.95

13 14 0.0043 0.37 12.1 0.0 1 23 1279 1301 1279 1301 0.94

14 14 0.031 2.7 9.4 1.0 1 22 1307 1328 1307 1328 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.4e-05	0.0029	18.7	1.7	1	23	257	279	257	279	0.96
2	14	2.1	1.8e+02	3.7	0.1	2	21	287	306	286	307	0.90
3	14	0.28	24	6.4	1.7	2	23	313	335	312	335	0.91
4	14	0.14	12	7.3	7.3	2	21	510	529	509	531	0.93
5	14	0.48	41	5.7	0.2	2	21	539	558	538	559	0.94
6	14	2e-05	0.0017	19.5	1.3	1	23	1068	1091	1068	1091	0.98
7	14	0.014	1.2	10.5	0.6	2	23	1105	1126	1104	1126	0.96
8	14	3.1e-05	0.0027	18.9	1.6	2	23	1133	1155	1132	1155	0.97
9	14	0.0055	0.47	11.8	3.3	2	23	1162	1184	1161	1184	0.95
10	14	0.081	7	8.1	0.6	1	20	1194	1213	1194	1215	0.94
11	14	2.1e-06	0.00018	22.5	0.5	1	23	1223	1245	1223	1245	0.97
12	14	0.00043	0.037	15.3	3.9	1	23	1251	1273	1251	1273	0.95
13	14	0.0043	0.37	12.1	0.0	1	23	1279	1301	1279	1301	0.94
14	14	0.031	2.7	9.4	1.0	1	22	1307	1328	1307	1328	0.95

Sequence Information

Coding Sequence: ATGGAAAGATCCGATCCTTATGGAACTCTGCCAATACCTCTCCAACATTTCAGAGATGGTGTTCAGCAGGATATATTGCACAATAATGACTTTAATGCTATTCAAcctcaaaatattttaaactttaTTCCTCCTCTTCATGATGCTCATAAAGAGAGCCTGAATGTACATGAATACAATCATTCTTCAAGAGAAAATGTGCAAGTGGAAAATTTGCATTCATCTTTTAAAATTGGGGATGATCCTAATTCTCTACTTGACCCCTTTTCTCCTACCCATCTGCTGGTGCATAGAACGCTGCAAAGAGACACTTATGAGACACCCAATAATTTGCAATCTCATCAAATCAACTTCGCAGGTCAAAATGTTAATGTAGTGTCCAATAATGTAATTCAATGTAAGTCAGCCTCTGAGTCTCAACAATCTCAGAGAGATGAGATTCCAGTCTCCACTGATGGATTAAGTAAATCGATTATACCTATTGAAACTCTTAATCATGAGACATTGCAAGATTTAGGAGACCATATGAAAAATAGTCAATCTTGTCAAGACTTGGGATTGGGAATCGGAACTAGAGATAATACTGAGGAGGAAAGGATTAATTTGACTGCCCAGATAAACCCTCAGTCAGTGCAGAAAGTAACACTTGTTACTGACTCATTCTTATATGAAGATGTAAACCAGAAATTGCCCTGTCATGATGGTCCTCCAAACCAGCTGGAGAACCAAGAAAAACCAAGTTCAGAGGCTGAAGCAGTAGACTACACTTTTGTTTGTACCTTCTGCCCAAAATCATTCAAGACCCAAGACCGCCTGGAAAGACATACATCATTGCACCCATATGGAACTTCGGCAATTCAATGTTCTAAATGCGGTGAAATTTTAGGAAATTTCATGCTTCTTCGTGAACATAAGCAATCTGAAGATTATTTAAGTTCTTGTGATATCTGTGGTCAAGTATTCCCTAATGAAGAATGTATGGTTTGTCACATAAGAAATACTCATAATGACTTTGATGACTTGTTTGAAGATGATTGCAACACTAACGAGTCTGAAAATGCATCAAATGTTAACGAGTCTGAAAATGCATCAAATGTACTTTGTGTTCAAACTCAATCCAAAAATGAAAGCCAAATGCCAGTTGAGGTAGATAATGAAACAAACAATTTGCATCTGGACAGTTCTACCAAAGAAATCGTTGAAAGACCCGCTGATGAGACTTTTTTCCCAACTGCCACTGGTTCAGAACAACCTTTGTCAAACTTAAGCAACTTGCAAGAAAATTTTGGGGAAGCTGTTGAGCAATCAGAATCTCTGTGTGAGAAACCCTCTGAAAGCAAAAGTGCTATTGATGAAGAAAAGTCAGTGAAAACAGAAGCGGCTGACATCCCAGAAGCTGGTGTCTATTCTGATCACAGGTCAGATTTTGAGACAAATGAGCAGCAAGAAGAACAGTGTAAAATTGAAGAGCAGTCTGCGGGTGAAGACAGCAGGTCGGAGTCTGGTTTAAGTAAACCTGAAAAATTAAGGTGCCAGTATTGCTCAAAGAAGTGCTCCTCTCGGAAAAGTCTTATTCGTCATGAGCGATGTCATCCTTATGGGACAGCAGCCATGAAATGTAACCTTTGTCTGGAAGTTGTTAAAAACTACAAGGCGTTAAAAGCACATAAGAAAAATCAGGGAAGCCAAGTTTCATGTAGCACATGTGATCAACTATGTCCAAATGAAACTTGCTTGTCTTGCCATGTTAGAAATGTCCACAATAACTCTGTTTATGAAGTGTACACCATAGATGATGATGACTCAAATGatagagagacggagagcggaTATTTTGTTTCCAGTGACCCTGTGGCTCCTCTGCGCATAAcgataaaacaagaaaaggaTGAGGGCTTTGAGAGATTAGCTTCACCAACCTATTCAGATTCCAATCCTCCAACGCCACCCACTCCTTCATTTCAAGGACCTCCAACACCTTCACCTCCAGCATTTGTATTTGAACCACAGCAGTCcgaagaggatgaggatgagagagaggaggaagatgatGAGTATGAACCTTATGCTTCTGATGAATCTGTTGGTATccgcaagggaaaaaaattgaaacgaaAATCTCTGCGGTCCACTCGAAGGTCCTCAGCCAATAGCACCCAGTATTCTCTATCAAGTGAGGAGAGTGATAATGATGAATCAGGAGATTTTAATTATAGTCCTCAGAGCGTTTCAGAGAGTGATGAGGGTTCAGATGATGCTGTATGGGAACGACCTGAAAATTTATTAGGGTCCTCAAACCGTAAAACTCGTAAGCGAAATCAAATAAGTGATGATGACTCGGATGTTGACCCTGATTGGGGGAAAGCCAAGAGTTCCTCCAGCAGTGCCAAGAAAAGAGGAAGGCGTAGAAAAGGCGCGCTTAGTGATGATTCAGATTATGGTGGAAGCTGGGAAGTGGCACAGAAATCTTCACGAAACATTAAGAAGAAGCCCTCAAAGAGGAAAGGCCAAAGCAGTGATGATGATTCAGATTTTGACCCTTACAGGAATAGTGATGAAAGTGCtccaaaagttttaaaaaagaagaaaggtggcaggagagggagaaaaaagaaactgACAGTGCAGTTCTTCTTGCCCGCAATACCAGTACCAAAAGTTAATCGACCAAGGGCTAAAGGTCTTTGTGGACAAAAGGCTCAAGATGCAGCTGCTGCTCTGGCCCAAGCAGTTGAGGATATGGAGACGATAGTTCCTGAATTGAAGACAGTAATAAAACCAGTTCGGCGGTCTGTTACCAAGGCATCACTGAAAAGATTCAATGAGACTTTGGACGATGAATATGATTATCTTTTAGATGTGAAGCCGGAACCTAAAGAGGATGTTGAAGATTCTATTCAAAATGTTCAAAACCATGAAGAGGACAATTCTAGGACTCAAAGTAATGAATTTCTTAATGGAGACTCTAACGAAGATCTGGATGGTTCTAAAACAGTTACCAAATCCTGGGAAGATGAGAAAGAAGAACAAGTAGTGATCAAAGCAGAACCATATGACTTTCAAGATGATGATCAAAGTACAGATCTATACTTCAGTAGGAAGTTTTGTGAAAATAATACACCCTTTGAAAATAGCAACAGTCCTTCAGAGAAAGCTGATTGTGAGGCTGGTGACGTATCTGATACTAAAAAAGAGTTGAGGTACGTCTGCAAAATTTGTGGTCGTGCATTGCAATATCGTTCACATCTTATTAGGCATTTACGCAAAGTTCATGATGGTGAAGGTGTGGAGGAAGTTATGCGTCGCATGATGAAATGCCGTTTTTGTGACAAACCTTACACTAATGAACTTAGCCTAATTAATCATGAAAAACTGCATGATGGCACTAGTAAAATGAAGTGCAATAAATGCGAGGAACGCTTTGATGACAAGAATGCACTTCGGAGACATCAAAGAAAGGTGCATTGGGAACATGCTCCAGTTGAATGTGAAATTTGTAAGAAGCAGTTGTCAGATAACACATGTCTTAAAGCACACATGAAACACATGCATGGGGCAGAGGAGAAAAAGGTCACTGTCTTTACGTGTGAAACATGTGGTAGGCAACTTCATACAAAGACGGCTTTTCAGAATCATGTTGCAAGTAAATGTGGGACAAATCTGCTCTTCCCCTGTGAAACATGTGGAAAATCATTTTCATTCAAGGGCTCTCTTAAAGCTCATCAACTGCTTCATACAGGAGTAAAGAGCTTTTTGTGCAAATTTTGTGGCAAAGCTTTCCACCAAAAAGGAGAAATGAAAAGGCATGAGAGAAAACACACAGGGGAGAAACCTTTTATCTGTGAGGTATGTGGTCGAGCATTTGCTTATCGCGAAAGCCTGCTGGGCCACAGCGCTGTTCATACTGGTATTAAGCCTTTCCCATGTAAGGCCTGTGGAATGCGGTTTTCTTGCTCCGGTAACCTTGTTAAACACAGACGTTCAAATAATTGTAAAGGACCGGGAGGCCAAAGTGATAATCCTGATCTGGCTAGTGATGTAAATCCTCAGAAGGATTCGTGTACTAGCCGACCTTCACCTGTTGTAGAAGGAATCGATATTCTAAGTCGGACGATAAAGCCTTCTGGATCAAGCAGTATTCCAAATGAGGGACATATTTCAGTGAATGAAGCTAATATATCATCAGTTGAAAGTTGTGCTGCCAGGCAGGAAAAGTGTGATAAGCAGATACTAGAGCAGATTCCTAGTGCTACTCAGTCTCAATCACCGAATCATGATGCAAATGTAACAAGTGCTCAGCCTACTCAAATACCAGTACCTAGTGTTATTAAGTCAACACCAACAATTCATGTCAAACCTACCTCTGCTCTGCAATCACTTCCCAAAGAAGAAAAGACTCTCTCAGAGAGTCCTCAAGTGCATGGAAATTCCAGTAATGAAAGTCATCGCGCAGCAACACAGTTTAACCAAACGCATTTCAGTAATGAAAAGAGTGTGACCCCTCAGAGTAATTACAACCCCAGCTCCTATATTGAGAATAGTTTTAGACAAGGAAATCAAGTTACTCCTAATGAAAGACGCTTTGCccaatttagtatggaaaactATGCTGGGAGACCTGATCAGTACTTTGACCGTCAATCCTTGCCTCGTCATGAAATGAACAGGCAGGTAATTGACAGATCTGTTGAGAGGCAAACCCCGAGATATTTAGATTGGACAGGTGGTGTTCAGTTTGGTGGAATCGATACAAGAAATGTTATGCAGTCTTATTCAGGTGCCACTATTCCACACACAGCTGTTTATCCAAATCTTCATTCTGGCCACCTGGGAAATTATGCTGCAGGTGCTCATGCGACTGGCCATTCAAACGCTCATACTGGTGTGTATGGAACTAATGCCATGATACCTGGATCAGTTGGTTTTCCAACATTCTCTCCTAATAACCAAATTGCGATGGGATATTCATCCAATAGTATTCCTGCACATTCGGTTACTCACTCCAATTCATATCCAGTGTCACATATGAGTCACCTTGAAGCTCTCTTTGGCCATTTTACTCAGCCCAGTGGTACTGTGAATAGTACTTTCCCGCGATTTTCATCCCAAAGTTCAAGTAATGCAAGTAATCCATCATCACATGGAAACCATCGAGTATAA
Protein Sequence: MERSDPYGTLPIPLQHFRDGVQQDILHNNDFNAIQPQNILNFIPPLHDAHKESLNVHEYNHSSRENVQVENLHSSFKIGDDPNSLLDPFSPTHLLVHRTLQRDTYETPNNLQSHQINFAGQNVNVVSNNVIQCKSASESQQSQRDEIPVSTDGLSKSIIPIETLNHETLQDLGDHMKNSQSCQDLGLGIGTRDNTEEERINLTAQINPQSVQKVTLVTDSFLYEDVNQKLPCHDGPPNQLENQEKPSSEAEAVDYTFVCTFCPKSFKTQDRLERHTSLHPYGTSAIQCSKCGEILGNFMLLREHKQSEDYLSSCDICGQVFPNEECMVCHIRNTHNDFDDLFEDDCNTNESENASNVNESENASNVLCVQTQSKNESQMPVEVDNETNNLHLDSSTKEIVERPADETFFPTATGSEQPLSNLSNLQENFGEAVEQSESLCEKPSESKSAIDEEKSVKTEAADIPEAGVYSDHRSDFETNEQQEEQCKIEEQSAGEDSRSESGLSKPEKLRCQYCSKKCSSRKSLIRHERCHPYGTAAMKCNLCLEVVKNYKALKAHKKNQGSQVSCSTCDQLCPNETCLSCHVRNVHNNSVYEVYTIDDDDSNDRETESGYFVSSDPVAPLRITIKQEKDEGFERLASPTYSDSNPPTPPTPSFQGPPTPSPPAFVFEPQQSEEDEDEREEEDDEYEPYASDESVGIRKGKKLKRKSLRSTRRSSANSTQYSLSSEESDNDESGDFNYSPQSVSESDEGSDDAVWERPENLLGSSNRKTRKRNQISDDDSDVDPDWGKAKSSSSSAKKRGRRRKGALSDDSDYGGSWEVAQKSSRNIKKKPSKRKGQSSDDDSDFDPYRNSDESAPKVLKKKKGGRRGRKKKLTVQFFLPAIPVPKVNRPRAKGLCGQKAQDAAAALAQAVEDMETIVPELKTVIKPVRRSVTKASLKRFNETLDDEYDYLLDVKPEPKEDVEDSIQNVQNHEEDNSRTQSNEFLNGDSNEDLDGSKTVTKSWEDEKEEQVVIKAEPYDFQDDDQSTDLYFSRKFCENNTPFENSNSPSEKADCEAGDVSDTKKELRYVCKICGRALQYRSHLIRHLRKVHDGEGVEEVMRRMMKCRFCDKPYTNELSLINHEKLHDGTSKMKCNKCEERFDDKNALRRHQRKVHWEHAPVECEICKKQLSDNTCLKAHMKHMHGAEEKKVTVFTCETCGRQLHTKTAFQNHVASKCGTNLLFPCETCGKSFSFKGSLKAHQLLHTGVKSFLCKFCGKAFHQKGEMKRHERKHTGEKPFICEVCGRAFAYRESLLGHSAVHTGIKPFPCKACGMRFSCSGNLVKHRRSNNCKGPGGQSDNPDLASDVNPQKDSCTSRPSPVVEGIDILSRTIKPSGSSSIPNEGHISVNEANISSVESCAARQEKCDKQILEQIPSATQSQSPNHDANVTSAQPTQIPVPSVIKSTPTIHVKPTSALQSLPKEEKTLSESPQVHGNSSNESHRAATQFNQTHFSNEKSVTPQSNYNPSSYIENSFRQGNQVTPNERRFAQFSMENYAGRPDQYFDRQSLPRHEMNRQVIDRSVERQTPRYLDWTGGVQFGGIDTRNVMQSYSGATIPHTAVYPNLHSGHLGNYAAGAHATGHSNAHTGVYGTNAMIPGSVGFPTFSPNNQIAMGYSSNSIPAHSVTHSNSYPVSHMSHLEALFGHFTQPSGTVNSTFPRFSSQSSSNASNPSSHGNHRV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -