Basic Information

Insect: Frankliniella fusca
Gene Symbol: zfh1_2
Assembly: GCA_029379305.1
Location: JAHWGI010000143.1:377303-389470[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00018 0.015 16.5 0.6 1 23 184 206 184 206 0.95

2 8 2.2e-05 0.0019 19.3 0.6 2 23 213 234 212 234 0.97

3 8 1.5e-06 0.00013 23.0 4.6 1 23 243 265 243 265 0.99

4 8 9.7e-05 0.0083 17.3 1.0 1 21 271 291 271 292 0.95

5 8 0.0075 0.64 11.4 1.7 2 21 585 604 584 605 0.94

6 8 6.7e-06 0.00058 20.9 1.7 1 23 981 1003 981 1003 0.94

7 8 0.0003 0.026 15.8 9.2 1 23 1009 1031 1009 1031 0.98

8 8 0.0047 0.41 12.0 4.4 1 21 1037 1057 1037 1058 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00018	0.015	16.5	0.6	1	23	184	206	184	206	0.95
2	8	2.2e-05	0.0019	19.3	0.6	2	23	213	234	212	234	0.97
3	8	1.5e-06	0.00013	23.0	4.6	1	23	243	265	243	265	0.99
4	8	9.7e-05	0.0083	17.3	1.0	1	21	271	291	271	292	0.95
5	8	0.0075	0.64	11.4	1.7	2	21	585	604	584	605	0.94
6	8	6.7e-06	0.00058	20.9	1.7	1	23	981	1003	981	1003	0.94
7	8	0.0003	0.026	15.8	9.2	1	23	1009	1031	1009	1031	0.98
8	8	0.0047	0.41	12.0	4.4	1	21	1037	1057	1037	1058	0.96

Sequence Information

Coding Sequence: ATGTACGACCCCTGTCTGCCCTCCCTGTGGTCGACTCGCACCTCCGAACCCCTCGCCGGCGCGTCTACTCCCCCTTCTCTACCGTTGACTGACCTGCCCTTCTTGTCGTGCTCTGCAGTGCCCCTGTCGTCCGAGGATGAGCATGCGCACGGCGCCATGGCCGCCATGGGCCCCGCCGGCGTGCTGGGCGGCGGCACGCCCGGCGTCGCGGCCCTGGCCGACGCGCTGGCCGACCGCAAGCAGGACGTCGAGTGCCAGCTGTGCCACGCGGGCGTGCCCGGCGGCTTCCCCGCGCTCGCCGAGCACATGGAGAAGGCCCACCCGCAGGTGATGGGGGGCGACGCGGGCGCCGGCAGCCTGCCCGGCGTGCACCTCAACGGCGTCGGCGTGCCCGGCGGGCCCGAGTCGCCGCCGCAGGGGTCGgcgggcgccgcctcgccgccgctcaCCCCGTCGTCGGCCTCCCCCAACGGCGTCGGAGGCGGCGCCGCCTTCGGCGTCCGCCACTTCGTCAAGGGCATGGGCatgcccggcggcgcgcagctggcGCACGCGTGCCCGCAGTGCAACTCGACGTTCGCCACCCGGGACCAGCTGGAGAAGCACGAGCTGGTGCACTCGCCCAACATCCAAGTGTCGTGCAAGGTGTGCAACAAGACGTTCGCCAACGTGTACCGGCTCCAGAGACACATGATCTCCCACGACGAGAGCGCCGTGCTGCGCAAGTTCAAGTGCCCCGAGTGCGAGAAGGCCTTCAAGTTCAAGCACCACCTCAAGGAGCACATCAGAATCCACAGCGGGGAGAAGCCCTTCGAGTGCGGCAACTGCGGCAAGCGCTTCTCGCACTCGGGCTCGTACTCGAGCCACATGACGTCCAAGAAGTGCCTCGTCATGAACCTCAAGGTGTCGCGGGCCAACCCGaaaggcggcgccggcggccaggCCCTGCCGCGGGGCAAGCGCGCGCCCACcaccatcaacaacaacaacaataataacaataacaacatcaacaacaacacgGCGTTCCCCATGCTGCCCAAGTACGCCGAGAACATGGGTGCCCTGTTTGGCGGCTTCCCTGCGCCGCAGCCGTTCTACCAGCTGCCGGGCATGGTGCCGTTCCACAAGCTGCTCGAGCACCTGCACGCCAACGCGCCCCAGCTGCAGGCGAGGAGTTCGTGCGGCAGCCCCGAGCAGGACCACAGCCCCCACAGCCCACGCAGCCCtcgcagcccccgcagcgggTCCCCCGAGCAGCGCAGCCCCTACTGCAGCCCGAGCGGCCACAgcggcggccccagcccggcgcgcagccccgcgcccagcgcgcgcagcggccaCAGCGGCGACCTGGACCACGACATGGACGACGACGACCGGCACCACGACCTGTCGTCCGCTCTCGAGGTCAGCATCGAGGAGCACCCcgtcaaggaggaggaggaggggtacgGCGGCGTGCCGGCCAGCAAGGAGCACGGCTCGGAGCACGACCGAGAAGACGCCGTCAAGTCGGAGCCCGaagacggcagcggcggcagtagCATCGGCGCCGCGCAGGAGAACGgcgtccaccaccaccaccaccaggacgGCGGTGACGCCGGTGCTGCGGAGGTCTGCGACGCCGACGAGCGGCGCAACACCCTGGACCGCATCCTGGCGTCGGTCAGCGCCAACGTGATGACCAAGTCGTTCCGGCCGGCCTCgtcgcccggcggcggcctcggcggcggcctcggtgACCAGCAGTGCCGCCACTGCCACCGCGCCTTCGCCAGCCCCATCGACCTCCACCAGCACGAGCGGTACCTGTGCAGCGCGCGTGAGGCCGCGGCGGAGTCGGACGGCCTGTCCGAGGGACTCGCCGCCAAGCTCGAGGACGTGGCCGGGCACCCCGTCAAGGAGTCgtccggggccgcggccggcgccggggcgggcgcgccgcagcagcagcagcaccatagCGGCTCCGAGGACGAGCTCACGGACCACGACCAGGACGGGCGCAAGGTGCGCGTCCGCTCGCAGATCACCGATAGCCAGCTGGCCATCCTCAAGCCGCACTACGCCGCCAACCCGCGGCCCAAGCGCGACGACCTGATCCGGCTCGCCGACATGGTGAAGCTGCCGCAGCGCGTGGTGCAGGTCTGGTTCCagaacacgcgcgcgcgcgaccgccGGGAGGGTAGGATCATCAACGGGCCGTCGGCGCCGTCCTCCGTGacgggcgcgcccgcgggccccgggccgggcggccccggcgccggcccccagcacggcctcggcgcgctgctcggcggcgccgtcctggccggtctgcagcagcagcacgcgcccTCGGAGCAGCCGCTCGACCTCTCCACCAAGAAGTGGCCCACCTCGCAACACTCCGTCCACTCGTCGCCGTccagctcgccgccgcggccgagcTCGCGCAACTCGGACGACGGCGTCATGAACCTGTCGAGGAAGTCGACGCGGTCCGACTCGCCcacgcggtcgcggtcgcggtcgccgACCCCGGTCGTCATCTCCCCCGCCTTCCTGCCGCTCTACAACCACCTCTACCCGCGCTCGCCGAGCCCCAGCAGCTTCCGCGGCCTCAAGCGGCACTTCCAGCCCGACCTGCCTTTCTTCAGCAAGCACCTGACGTCCACCCCGGACCTGCACCTACGCGCCAACTCGTCCAGCCCGGGCTCCGACCGCCGGTGGAAGCAGTGTGGTCCTGACGGTGAGGACACCCCAGACGAGGCGGACGACGAACAGCAGCAGATGAAGAGGCGcgcgctgggcctgggcggcggcctgggcgcgctCACGGGGTCGTTGGCGGGGCCGCTGTCCCTCGGCATGGCGGGCGCCCTGGCGCCGCTCCTGGCGCACGGCTTCCCGGACGGCTCCCCCGGCGCCCTGGACAACGAGCCGGAGGGCCAGTTCGTCTGCAAGCAGTGCGACAAGGTCTTCAGCAAGCAGAGCTCACTGGCGCGCCACAAGTTTGAACACTCAGGTCAGAGACCGCACAAATGTGACGTCTGTCCAAAGGCGTTTAAACATAAGCATCACCTCACTGAACACAAGAGACTACACagtggagagaaaccgtttcaGTGTCAGAAGTGCCTCAAGCGATTCAGCCATTCGGGGTCCTACAGTCAGCACATGAATCACCGTTACTCCTACTGCAAACCATATAGAGAATAG
Protein Sequence: MYDPCLPSLWSTRTSEPLAGASTPPSLPLTDLPFLSCSAVPLSSEDEHAHGAMAAMGPAGVLGGGTPGVAALADALADRKQDVECQLCHAGVPGGFPALAEHMEKAHPQVMGGDAGAGSLPGVHLNGVGVPGGPESPPQGSAGAASPPLTPSSASPNGVGGGAAFGVRHFVKGMGMPGGAQLAHACPQCNSTFATRDQLEKHELVHSPNIQVSCKVCNKTFANVYRLQRHMISHDESAVLRKFKCPECEKAFKFKHHLKEHIRIHSGEKPFECGNCGKRFSHSGSYSSHMTSKKCLVMNLKVSRANPKGGAGGQALPRGKRAPTTINNNNNNNNNNINNNTAFPMLPKYAENMGALFGGFPAPQPFYQLPGMVPFHKLLEHLHANAPQLQARSSCGSPEQDHSPHSPRSPRSPRSGSPEQRSPYCSPSGHSGGPSPARSPAPSARSGHSGDLDHDMDDDDRHHDLSSALEVSIEEHPVKEEEEGYGGVPASKEHGSEHDREDAVKSEPEDGSGGSSIGAAQENGVHHHHHQDGGDAGAAEVCDADERRNTLDRILASVSANVMTKSFRPASSPGGGLGGGLGDQQCRHCHRAFASPIDLHQHERYLCSAREAAAESDGLSEGLAAKLEDVAGHPVKESSGAAAGAGAGAPQQQQHHSGSEDELTDHDQDGRKVRVRSQITDSQLAILKPHYAANPRPKRDDLIRLADMVKLPQRVVQVWFQNTRARDRREGRIINGPSAPSSVTGAPAGPGPGGPGAGPQHGLGALLGGAVLAGLQQQHAPSEQPLDLSTKKWPTSQHSVHSSPSSSPPRPSSRNSDDGVMNLSRKSTRSDSPTRSRSRSPTPVVISPAFLPLYNHLYPRSPSPSSFRGLKRHFQPDLPFFSKHLTSTPDLHLRANSSSPGSDRRWKQCGPDGEDTPDEADDEQQQMKRRALGLGGGLGALTGSLAGPLSLGMAGALAPLLAHGFPDGSPGALDNEPEGQFVCKQCDKVFSKQSSLARHKFEHSGQRPHKCDVCPKAFKHKHHLTEHKRLHSGEKPFQCQKCLKRFSHSGSYSQHMNHRYSYCKPYRE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00732540;
90% Identity: iTF_00731368;
80% Identity: iTF_00731368;